RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 RNF135Q8IUD6 432 aa7.09□□□□□ -1.27
VPS41-207ENST00000439468 SCTRP47872 440 aa7.08□□□□□ -1.28
VPS41-207ENST00000439468 ERVK-9P63128 1117 aa7.08□□□□□ -1.28
VPS41-207ENST00000439468 ERICH6Q7L0X2 663 aa7.08□□□□□ -1.28
VPS41-207ENST00000439468 CYP2U1Q7Z449 544 aa7.08□□□□□ -1.28
VPS41-207ENST00000439468 DOLKQ9UPQ8 538 aa7.08□□□□□ -1.28
VPS41-207ENST00000439468 OXLD1Q5BKU9 147 aa7.07□□□□□ -1.28
VPS41-207ENST00000439468 CCDC85AQ96PX6 553 aaPredicted RBP7.07□□□□□ -1.28
VPS41-207ENST00000439468 RNF217Q8TC41 542 aa7.06□□□□□ -1.28
VPS41-207ENST00000439468 IRF7Q92985 503 aa7.06□□□□□ -1.28
VPS41-207ENST00000439468 NLRP3Q96P20 1036 aa7.06□□□□□ -1.28
VPS41-207ENST00000439468 ZMYND15Q9H091 742 aa7.06□□□□□ -1.28
VPS41-207ENST00000439468 H3BM21 787 aa7.05□□□□□ -1.28
VPS41-207ENST00000439468 SOX11P35716 441 aa7.05□□□□□ -1.28
VPS41-207ENST00000439468 PTSQ03393 145 aa7.05□□□□□ -1.28
VPS41-207ENST00000439468 NPAS3Q8IXF0 933 aa7.05□□□□□ -1.28
VPS41-207ENST00000439468 CDCA7Q9BWT1 371 aaPredicted RBP7.05□□□□□ -1.28
VPS41-207ENST00000439468 ARHGEF10LQ9HCE6 1279 aa7.05□□□□□ -1.28
VPS41-207ENST00000439468 RAB6BQ9NRW1 208 aa7.05□□□□□ -1.28
VPS41-207ENST00000439468 A0A1W2PRU2 124 aa7.04□□□□□ -1.28
VPS41-207ENST00000439468 SLC27A3Q5K4L6 730 aa7.04□□□□□ -1.28
VPS41-207ENST00000439468 FOXD4L5Q5VV16 416 aaPredicted RBP7.04□□□□□ -1.28
VPS41-207ENST00000439468 PRICKLE2Q7Z3G6 844 aa7.04□□□□□ -1.28
VPS41-207ENST00000439468 KDF1Q8NAX2 398 aaPredicted RBP7.04□□□□□ -1.28
VPS41-207ENST00000439468 OSBPL3Q9H4L5 887 aa7.04□□□□□ -1.28
VPS41-207ENST00000439468 PPFIA3O75145 1194 aa7.03□□□□□ -1.28
VPS41-207ENST00000439468 TSGA10IPQ3SY00 556 aa7.03□□□□□ -1.28
VPS41-207ENST00000439468 LYSMD3Q7Z3D4 306 aa7.03□□□□□ -1.28
VPS41-207ENST00000439468 CLUAP1Q96AJ1 413 aa7.03□□□□□ -1.28
VPS41-207ENST00000439468 RHOQP17081 205 aa7.02□□□□□ -1.29
VPS41-207ENST00000439468 USP4Q13107 963 aa7.02□□□□□ -1.29
VPS41-207ENST00000439468 LCE2AQ5TA79 106 aaPredicted RBP7.02□□□□□ -1.29
VPS41-207ENST00000439468 CCDC155Q8N6L0 562 aa7.02□□□□□ -1.29
VPS41-207ENST00000439468 TRAK2O60296 914 aa7.01□□□□□ -1.29
VPS41-207ENST00000439468 GMPRP36959 345 aa7.01□□□□□ -1.29
VPS41-207ENST00000439468 RNF144AP50876 292 aaPredicted RBP7.01□□□□□ -1.29
VPS41-207ENST00000439468 LCE2CQ5TA81 110 aa7.01□□□□□ -1.29
VPS41-207ENST00000439468 PHTF2Q8N3S3 785 aa7.01□□□□□ -1.29
VPS41-207ENST00000439468 PLPP7Q8NBV4 271 aa7.01□□□□□ -1.29
VPS41-207ENST00000439468 SIRT1Q96EB6 747 aa7.01□□□□□ -1.29
VPS41-207ENST00000439468 ERBB4Q15303 1308 aa7.01□□□□□ -1.29
VPS41-207ENST00000439468 CDC14CA4D256 554 aa7□□□□□ -1.29
VPS41-207ENST00000439468 POM121CA8CG34 1229 aa7□□□□□ -1.29
VPS41-207ENST00000439468 PIK3CDO00329 1044 aa7□□□□□ -1.29
VPS41-207ENST00000439468 GNRH1P01148 92 aa7□□□□□ -1.29
VPS41-207ENST00000439468 SKIP12755 728 aa7□□□□□ -1.29
VPS41-207ENST00000439468 CLN3Q13286 438 aa7□□□□□ -1.29
VPS41-207ENST00000439468 GTF2E1P29083 439 aaPredicted RBP6.99□□□□□ -1.29
VPS41-207ENST00000439468 GPC1P35052 558 aa6.99□□□□□ -1.29
VPS41-207ENST00000439468 MAP7D1Q3KQU3 841 aa6.99□□□□□ -1.29
VPS41-207ENST00000439468 PROSER2Q86WR7 435 aaPredicted RBP6.99□□□□□ -1.29
VPS41-207ENST00000439468 CNKSR1Q969H4 720 aa6.99□□□□□ -1.29
VPS41-207ENST00000439468 SLC35F4A4IF30 521 aa6.98□□□□□ -1.29
VPS41-207ENST00000439468 ARID3CA6NKF2 412 aa6.98□□□□□ -1.29
VPS41-207ENST00000439468 INSM1Q01101 510 aaPredicted RBP6.98□□□□□ -1.29
VPS41-207ENST00000439468 ESCO1Q5FWF5 840 aa6.98□□□□□ -1.29
VPS41-207ENST00000439468 ALG2Q9H553 416 aa6.98□□□□□ -1.29
VPS41-207ENST00000439468 WIPF1O43516 503 aa6.97□□□□□ -1.29
VPS41-207ENST00000439468 STAU1O95793 577 aaKnown RBP6.97□□□□□ -1.29
VPS41-207ENST00000439468 IL2RAP01589 272 aa6.97□□□□□ -1.29
VPS41-207ENST00000439468 ITGA6P23229 1130 aa6.97□□□□□ -1.29
VPS41-207ENST00000439468 POU4F2Q12837 409 aa6.97□□□□□ -1.29
VPS41-207ENST00000439468 EML3Q32P44 896 aa6.97□□□□□ -1.29
VPS41-207ENST00000439468 ESYT1Q9BSJ8 1104 aa6.97□□□□□ -1.29
VPS41-207ENST00000439468 PSME1Q06323 249 aa6.96□□□□□ -1.3
VPS41-207ENST00000439468 HDGFL1Q5TGJ6 251 aa6.96□□□□□ -1.3
VPS41-207ENST00000439468 TMEM214Q6NUQ4 689 aaKnown RBP6.96□□□□□ -1.3
VPS41-207ENST00000439468 RIPOR1Q6ZS17 1223 aa6.96□□□□□ -1.3
VPS41-207ENST00000439468 ZSCAN10Q96SZ4 725 aaPredicted RBP6.96□□□□□ -1.3
VPS41-207ENST00000439468 GAS2L1Q99501 681 aaPredicted RBP6.96□□□□□ -1.3
VPS41-207ENST00000439468 SENP3-EIF4A1A0A087X0R7 540 aa6.95□□□□□ -1.3
VPS41-207ENST00000439468 VSIG8P0DPA2 414 aa6.95□□□□□ -1.3
VPS41-207ENST00000439468 PHKA2P46019 1235 aa6.95□□□□□ -1.3
VPS41-207ENST00000439468 CENPCQ03188 943 aa6.95□□□□□ -1.3
VPS41-207ENST00000439468 TLR1Q15399 786 aa6.95□□□□□ -1.3
VPS41-207ENST00000439468 GNASQ5JWF2 1037 aa6.95□□□□□ -1.3
VPS41-207ENST00000439468 DEPDC4Q8N2C3 294 aa6.95□□□□□ -1.3
VPS41-207ENST00000439468 VWA5B2Q8N398 1253 aa6.95□□□□□ -1.3
VPS41-207ENST00000439468 GRIP2Q9C0E4 1043 aa6.95□□□□□ -1.3
VPS41-207ENST00000439468 C1orf115Q9H7X2 142 aa6.95□□□□□ -1.3
VPS41-207ENST00000439468 ETNK1Q9HBU6 452 aa6.95□□□□□ -1.3
VPS41-207ENST00000439468 CHIC2Q9UKJ5 165 aa6.95□□□□□ -1.3
VPS41-207ENST00000439468 USP17L5A8MUK1 530 aa6.94□□□□□ -1.3
VPS41-207ENST00000439468 WASLO00401 505 aaPredicted RBP6.94□□□□□ -1.3
VPS41-207ENST00000439468 GDF10P55107 478 aa6.94□□□□□ -1.3
VPS41-207ENST00000439468 NCOA4Q13772 614 aa6.94□□□□□ -1.3
VPS41-207ENST00000439468 NBPF10Q6P3W6 841 aaKnown RBP6.94□□□□□ -1.3
VPS41-207ENST00000439468 SV2AQ7L0J3 742 aa6.94□□□□□ -1.3
VPS41-207ENST00000439468 TAS1R3Q7RTX0 852 aa6.94□□□□□ -1.3
VPS41-207ENST00000439468 NBPF15Q8N660 670 aa6.94□□□□□ -1.3
VPS41-207ENST00000439468 TIMMDC1Q9NPL8 285 aa6.94□□□□□ -1.3
VPS41-207ENST00000439468 NOD1Q9Y239 953 aa6.94□□□□□ -1.3
VPS41-207ENST00000439468 NFATC2IPQ8NCF5 419 aa6.93□□□□□ -1.3
VPS41-207ENST00000439468 ADAMTS19Q8TE59 1207 aa6.93□□□□□ -1.3
VPS41-207ENST00000439468 GLMNQ92990 594 aa6.93□□□□□ -1.3
VPS41-207ENST00000439468 XAGE2Q96GT9 111 aa6.93□□□□□ -1.3
VPS41-207ENST00000439468 SERTAD1Q9UHV2 236 aa6.93□□□□□ -1.3
VPS41-207ENST00000439468 GTF2IP78347 998 aa6.92□□□□□ -1.3
VPS41-207ENST00000439468 GPR161Q8N6U8 529 aaKnown RBP6.92□□□□□ -1.3
VPS41-207ENST00000439468 A6NJR5 290 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms