RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 ANKRD44Q8N8A2 993 aa17.01■□□□□ 0.31
COL6A3-207ENST00000433762 LRRC37A3O60309 1634 aa17.01■□□□□ 0.31
COL6A3-207ENST00000433762 TBC1D9Q6ZT07 1266 aa17.01■□□□□ 0.31
COL6A3-207ENST00000433762 ARHGAP23Q9P227 1491 aa17■□□□□ 0.31
COL6A3-207ENST00000433762 KIF2CQ99661 725 aa17■□□□□ 0.31
COL6A3-207ENST00000433762 KDRP35968 1356 aa17■□□□□ 0.31
COL6A3-207ENST00000433762 CRB1P82279 1406 aa17■□□□□ 0.31
COL6A3-207ENST00000433762 PTPRUQ92729 1446 aa17■□□□□ 0.31
COL6A3-207ENST00000433762 ADAMTSL3P82987 1691 aa17■□□□□ 0.31
COL6A3-207ENST00000433762 RTL1A6NKG5 1358 aa16.99■□□□□ 0.31
COL6A3-207ENST00000433762 ACEP12821 1306 aa16.99■□□□□ 0.31
COL6A3-207ENST00000433762 SOS1Q07889 1333 aaPredicted RBP16.99■□□□□ 0.31
COL6A3-207ENST00000433762 SBNO1A3KN83 1393 aa16.97■□□□□ 0.31
COL6A3-207ENST00000433762 SULT6B1Q6IMI4 303 aa16.97■□□□□ 0.31
COL6A3-207ENST00000433762 PLEKHM2Q8IWE5 1019 aa16.97■□□□□ 0.31
COL6A3-207ENST00000433762 GBP4Q96PP9 640 aa16.97■□□□□ 0.31
COL6A3-207ENST00000433762 K7ELQ4 463 aaPredicted RBP16.97■□□□□ 0.31
COL6A3-207ENST00000433762 RAB3GAP1Q15042 981 aa16.97■□□□□ 0.31
COL6A3-207ENST00000433762 SKOR2Q2VWA4 1001 aaPredicted RBP16.97■□□□□ 0.31
COL6A3-207ENST00000433762 CLEC17AQ6ZS10 378 aa16.97■□□□□ 0.31
COL6A3-207ENST00000433762 C1orf115Q9H7X2 142 aa16.97■□□□□ 0.31
COL6A3-207ENST00000433762 FLT4P35916 1363 aa16.97■□□□□ 0.31
COL6A3-207ENST00000433762 FAM83GA6ND36 823 aa16.96■□□□□ 0.31
COL6A3-207ENST00000433762 GOLGA6L3A6NEY3 463 aa16.96■□□□□ 0.31
COL6A3-207ENST00000433762 TRAK2O60296 914 aa16.96■□□□□ 0.31
COL6A3-207ENST00000433762 TTC22Q5TAA0 569 aa16.96■□□□□ 0.31
COL6A3-207ENST00000433762 HTATSF1O43719 755 aaKnown RBP16.96■□□□□ 0.31
COL6A3-207ENST00000433762 HSP90AB1P08238 724 aaKnown RBP16.96■□□□□ 0.31
COL6A3-207ENST00000433762 NCKAP5LQ9HCH0 1330 aa16.95■□□□□ 0.3
COL6A3-207ENST00000433762 ELL2O00472 640 aaPredicted RBP16.95■□□□□ 0.3
COL6A3-207ENST00000433762 XRN1Q8IZH2 1706 aaKnown RBP16.95■□□□□ 0.3
COL6A3-207ENST00000433762 RABEP1Q15276 862 aa16.95■□□□□ 0.3
COL6A3-207ENST00000433762 ANKARQ7Z5J8 1434 aa16.95■□□□□ 0.3
COL6A3-207ENST00000433762 FAM208AQ9UK61 1670 aaKnown RBP16.94■□□□□ 0.3
COL6A3-207ENST00000433762 CEP85Q6P2H3 762 aa16.94■□□□□ 0.3
COL6A3-207ENST00000433762 AEBP1Q8IUX7 1158 aa16.94■□□□□ 0.3
COL6A3-207ENST00000433762 GSPT1P15170 499 aaKnown RBP16.93■□□□□ 0.3
COL6A3-207ENST00000433762 PIK3C2AO00443 1686 aa16.93■□□□□ 0.3
COL6A3-207ENST00000433762 HMMRO75330 724 aa16.93■□□□□ 0.3
COL6A3-207ENST00000433762 MRE11P49959 708 aa16.93■□□□□ 0.3
COL6A3-207ENST00000433762 DCTN1Q14203 1278 aa16.93■□□□□ 0.3
COL6A3-207ENST00000433762 TBX22Q9Y458 520 aa16.93■□□□□ 0.3
COL6A3-207ENST00000433762 TUBGCP6Q96RT7 1819 aa16.93■□□□□ 0.3
COL6A3-207ENST00000433762 MSH6P52701 1360 aa16.93■□□□□ 0.3
COL6A3-207ENST00000433762 CCT4P50991 539 aaKnown RBP16.92■□□□□ 0.3
COL6A3-207ENST00000433762 BABAM1Q9NWV8 329 aa16.92■□□□□ 0.3
COL6A3-207ENST00000433762 IGSF1Q8N6C5 1336 aa16.92■□□□□ 0.3
COL6A3-207ENST00000433762 CASC1Q6TDU7 716 aa16.92■□□□□ 0.3
COL6A3-207ENST00000433762 GAS2L2Q8NHY3 880 aa16.92■□□□□ 0.3
COL6A3-207ENST00000433762 OSBPL3Q9H4L5 887 aa16.92■□□□□ 0.3
COL6A3-207ENST00000433762 SPRYD3Q8NCJ5 442 aa16.91■□□□□ 0.3
COL6A3-207ENST00000433762 PXDNLA1KZ92 1463 aa16.91■□□□□ 0.3
COL6A3-207ENST00000433762 TNPO1Q92973 898 aaKnown RBP16.91■□□□□ 0.3
COL6A3-207ENST00000433762 EID1Q9Y6B2 187 aa16.91■□□□□ 0.3
COL6A3-207ENST00000433762 MARF1Q9Y4F3 1742 aaKnown RBP16.9■□□□□ 0.3
COL6A3-207ENST00000433762 IBTKQ9P2D0 1353 aaPredicted RBP16.89■□□□□ 0.29
COL6A3-207ENST00000433762 RGPD8O14715 1765 aaPredicted RBP16.89■□□□□ 0.29
COL6A3-207ENST00000433762 LTKP29376 864 aa16.89■□□□□ 0.29
COL6A3-207ENST00000433762 HSP90AB2PQ58FF8 381 aa16.89■□□□□ 0.29
COL6A3-207ENST00000433762 RTN4Q9NQC3 1192 aaKnown RBP16.89■□□□□ 0.29
COL6A3-207ENST00000433762 MAP3K19Q56UN5 1328 aa16.89■□□□□ 0.29
COL6A3-207ENST00000433762 XRCC6P12956 609 aaKnown RBP eCLIP16.88■□□□□ 0.29
COL6A3-207ENST00000433762 RTF1Q92541 710 aaKnown RBP16.88■□□□□ 0.29
COL6A3-207ENST00000433762 USP26Q9BXU7 913 aa16.88■□□□□ 0.29
COL6A3-207ENST00000433762 MCM10Q7L590 875 aa16.87■□□□□ 0.29
COL6A3-207ENST00000433762 REC8O95072 547 aa16.87■□□□□ 0.29
COL6A3-207ENST00000433762 HSP90AA1P07900 732 aaKnown RBP16.87■□□□□ 0.29
COL6A3-207ENST00000433762 GOLGA6L22H0YM25 854 aa16.86■□□□□ 0.29
COL6A3-207ENST00000433762 CWC22Q9HCG8 908 aaKnown RBP16.86■□□□□ 0.29
COL6A3-207ENST00000433762 CEP170BQ9Y4F5 1589 aaPredicted RBP16.85■□□□□ 0.29
COL6A3-207ENST00000433762 SLC4A2P04920 1241 aa16.85■□□□□ 0.29
COL6A3-207ENST00000433762 NUCB2P80303 420 aa16.85■□□□□ 0.29
COL6A3-207ENST00000433762 NWD1Q149M9 1564 aa16.85■□□□□ 0.29
COL6A3-207ENST00000433762 CD2BP2O95400 341 aaKnown RBP16.85■□□□□ 0.29
COL6A3-207ENST00000433762 MTHFSDQ2M296 383 aaKnown RBP16.85■□□□□ 0.29
COL6A3-207ENST00000433762 MEIS3Q99687 375 aa16.85■□□□□ 0.29
COL6A3-207ENST00000433762 TSPYL4Q9UJ04 414 aa16.85■□□□□ 0.29
COL6A3-207ENST00000433762 SDSP20132 328 aa16.84■□□□□ 0.29
COL6A3-207ENST00000433762 AMOTL2Q9Y2J4 779 aa16.84■□□□□ 0.29
COL6A3-207ENST00000433762 EPB41L2O43491 1005 aaKnown RBP16.83■□□□□ 0.28
COL6A3-207ENST00000433762 KRT24Q2M2I5 525 aa16.83■□□□□ 0.28
COL6A3-207ENST00000433762 THEMISQ8N1K5 641 aaPredicted RBP16.83■□□□□ 0.28
COL6A3-207ENST00000433762 GNAI3P08754 354 aa16.82■□□□□ 0.28
COL6A3-207ENST00000433762 STK31Q9BXU1 1019 aa16.82■□□□□ 0.28
COL6A3-207ENST00000433762 GRPEL1Q9HAV7 217 aa16.82■□□□□ 0.28
COL6A3-207ENST00000433762 PHRF1Q9P1Y6 1649 aaKnown RBP16.82■□□□□ 0.28
COL6A3-207ENST00000433762 SETD1BQ9UPS6 1966 aaKnown RBP16.82■□□□□ 0.28
COL6A3-207ENST00000433762 ST18O60284 1047 aa16.82■□□□□ 0.28
COL6A3-207ENST00000433762 GNAI2P04899 355 aa16.82■□□□□ 0.28
COL6A3-207ENST00000433762 CCDC30Q5VVM6 783 aa16.82■□□□□ 0.28
COL6A3-207ENST00000433762 IL17RAQ96F46 866 aa16.81■□□□□ 0.28
COL6A3-207ENST00000433762 AOX1Q06278 1338 aa16.81■□□□□ 0.28
COL6A3-207ENST00000433762 SALL3Q9BXA9 1300 aa16.81■□□□□ 0.28
COL6A3-207ENST00000433762 ERC2O15083 957 aa16.81■□□□□ 0.28
COL6A3-207ENST00000433762 CYP2E1P05181 493 aaPredicted RBP16.81■□□□□ 0.28
COL6A3-207ENST00000433762 EYA1Q99502 592 aa16.81■□□□□ 0.28
COL6A3-207ENST00000433762 CHMP4AQ9BY43 222 aa16.81■□□□□ 0.28
COL6A3-207ENST00000433762 MED1Q15648 1581 aaPredicted RBP16.8■□□□□ 0.28
COL6A3-207ENST00000433762 AMPHP49418 695 aa16.8■□□□□ 0.28
COL6A3-207ENST00000433762 KLHL40Q2TBA0 621 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms