RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 FAM43AQ8N2R8 423 aa9.01□□□□□ -0.97
COL28A1-202ENST00000430711 MIS18AQ9NYP9 233 aa9.01□□□□□ -0.97
COL28A1-202ENST00000430711 CHMP5Q9NZZ3 219 aa9.01□□□□□ -0.97
COL28A1-202ENST00000430711 ABCC4O15439 1325 aa9.01□□□□□ -0.97
COL28A1-202ENST00000430711 KIF16BQ96L93 1317 aa9.01□□□□□ -0.97
COL28A1-202ENST00000430711 FCHSD2O94868 740 aa9□□□□□ -0.97
COL28A1-202ENST00000430711 CT47B1P0C2W7 299 aaPredicted RBP9□□□□□ -0.97
COL28A1-202ENST00000430711 AAMPQ13685 434 aa9□□□□□ -0.97
COL28A1-202ENST00000430711 MCM10Q7L590 875 aa9□□□□□ -0.97
COL28A1-202ENST00000430711 SLC52A1Q9NWF4 448 aa9□□□□□ -0.97
COL28A1-202ENST00000430711 ZNF142P52746 1687 aaPredicted RBP9□□□□□ -0.97
COL28A1-202ENST00000430711 TWISTNBQ3B726 338 aaPredicted RBP9□□□□□ -0.97
COL28A1-202ENST00000430711 PEAK1Q9H792 1746 aa9□□□□□ -0.97
COL28A1-202ENST00000430711 DLC1Q96QB1 1528 aa9□□□□□ -0.97
COL28A1-202ENST00000430711 PIK3R4Q99570 1358 aa9□□□□□ -0.97
COL28A1-202ENST00000430711 FOXO3O43524 673 aa8.99□□□□□ -0.97
COL28A1-202ENST00000430711 ALDH1L2Q3SY69 923 aa8.99□□□□□ -0.97
COL28A1-202ENST00000430711 TSHZ3Q63HK5 1081 aa8.99□□□□□ -0.97
COL28A1-202ENST00000430711 CPSF1Q10570 1443 aaKnown RBP8.99□□□□□ -0.97
COL28A1-202ENST00000430711 ATP10DQ9P241 1426 aa8.99□□□□□ -0.97
COL28A1-202ENST00000430711 RIMS2Q9UQ26 1411 aa8.99□□□□□ -0.97
COL28A1-202ENST00000430711 BMP2KLQ5H9B9 411 aa8.99□□□□□ -0.97
COL28A1-202ENST00000430711 HSCBQ8IWL3 235 aa8.99□□□□□ -0.97
COL28A1-202ENST00000430711 STAG3Q9UJ98 1225 aa8.99□□□□□ -0.97
COL28A1-202ENST00000430711 REREQ9P2R6 1566 aa8.99□□□□□ -0.97
COL28A1-202ENST00000430711 GOLGA6L3A6NEY3 463 aa8.98□□□□□ -0.97
COL28A1-202ENST00000430711 PIP4K2BP78356 416 aa8.98□□□□□ -0.97
COL28A1-202ENST00000430711 PLEKHM2Q8IWE5 1019 aa8.98□□□□□ -0.97
COL28A1-202ENST00000430711 MSH6P52701 1360 aa8.98□□□□□ -0.97
COL28A1-202ENST00000430711 MON2Q7Z3U7 1717 aa8.97□□□□□ -0.97
COL28A1-202ENST00000430711 G2E3Q7L622 706 aa8.97□□□□□ -0.97
COL28A1-202ENST00000430711 MEIS3Q99687 375 aa8.97□□□□□ -0.97
COL28A1-202ENST00000430711 ATP7BP35670 1465 aa8.97□□□□□ -0.97
COL28A1-202ENST00000430711 WASLO00401 505 aaPredicted RBP8.97□□□□□ -0.97
COL28A1-202ENST00000430711 IPO8O15397 1037 aaKnown RBP8.97□□□□□ -0.97
COL28A1-202ENST00000430711 NUDT16Q96DE0 195 aaKnown RBP8.97□□□□□ -0.97
COL28A1-202ENST00000430711 CDK12Q9NYV4 1490 aaPredicted RBP8.96□□□□□ -0.97
COL28A1-202ENST00000430711 F6X3S4 739 aa8.96□□□□□ -0.97
COL28A1-202ENST00000430711 HSP90AB1P08238 724 aaKnown RBP8.96□□□□□ -0.97
COL28A1-202ENST00000430711 EIF4A2Q14240 407 aaKnown RBP8.96□□□□□ -0.97
COL28A1-202ENST00000430711 RAB3GAP1Q15042 981 aa8.96□□□□□ -0.97
COL28A1-202ENST00000430711 HSP90AB2PQ58FF8 381 aa8.96□□□□□ -0.97
COL28A1-202ENST00000430711 IFT57Q9NWB7 429 aa8.96□□□□□ -0.97
COL28A1-202ENST00000430711 AGLP35573 1532 aa8.96□□□□□ -0.98
COL28A1-202ENST00000430711 DTNBO60941 627 aa8.96□□□□□ -0.98
COL28A1-202ENST00000430711 BRPF1P55201 1214 aaPredicted RBP8.96□□□□□ -0.98
COL28A1-202ENST00000430711 SULT6B1Q6IMI4 303 aa8.96□□□□□ -0.98
COL28A1-202ENST00000430711 ZGPATQ8N5A5 531 aaKnown RBP8.96□□□□□ -0.98
COL28A1-202ENST00000430711 SNX21Q969T3 373 aa8.96□□□□□ -0.98
COL28A1-202ENST00000430711 GRPEL1Q9HAV7 217 aa8.96□□□□□ -0.98
COL28A1-202ENST00000430711 DSG3P32926 999 aa8.95□□□□□ -0.98
COL28A1-202ENST00000430711 AKAP12Q02952 1782 aa8.95□□□□□ -0.98
COL28A1-202ENST00000430711 EDC4Q6P2E9 1401 aaKnown RBP8.95□□□□□ -0.98
COL28A1-202ENST00000430711 POTEAQ6S8J7 498 aa8.95□□□□□ -0.98
COL28A1-202ENST00000430711 CFAP44Q96MT7 982 aa8.95□□□□□ -0.98
COL28A1-202ENST00000430711 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.95□□□□□ -0.98
COL28A1-202ENST00000430711 ROBO2Q9HCK4 1378 aa8.94□□□□□ -0.98
COL28A1-202ENST00000430711 GNAI1P63096 354 aa8.94□□□□□ -0.98
COL28A1-202ENST00000430711 K7ELQ4 463 aaPredicted RBP8.93□□□□□ -0.98
COL28A1-202ENST00000430711 CEP85Q6P2H3 762 aa8.93□□□□□ -0.98
COL28A1-202ENST00000430711 NECTIN2Q92692 538 aa8.93□□□□□ -0.98
COL28A1-202ENST00000430711 NSFL1CQ9UNZ2 370 aaKnown RBP8.93□□□□□ -0.98
COL28A1-202ENST00000430711 NRKQ7Z2Y5 1582 aa8.93□□□□□ -0.98
COL28A1-202ENST00000430711 ITSN1Q15811 1721 aa8.93□□□□□ -0.98
COL28A1-202ENST00000430711 SDSP20132 328 aa8.93□□□□□ -0.98
COL28A1-202ENST00000430711 L1TD1Q5T7N2 865 aaKnown RBP8.93□□□□□ -0.98
COL28A1-202ENST00000430711 TTC22Q5TAA0 569 aa8.93□□□□□ -0.98
COL28A1-202ENST00000430711 FOXD4L5Q5VV16 416 aaPredicted RBP8.93□□□□□ -0.98
COL28A1-202ENST00000430711 FOXD4L4Q8WXT5 416 aaPredicted RBP8.93□□□□□ -0.98
COL28A1-202ENST00000430711 UPF1Q92900 1129 aaKnown RBP eCLIP8.93□□□□□ -0.98
COL28A1-202ENST00000430711 GCC1Q96CN9 775 aa8.93□□□□□ -0.98
COL28A1-202ENST00000430711 IL25Q9H293 177 aa8.93□□□□□ -0.98
COL28A1-202ENST00000430711 DCTPP1Q9H773 170 aa8.93□□□□□ -0.98
COL28A1-202ENST00000430711 RTL1A6NKG5 1358 aa8.92□□□□□ -0.98
COL28A1-202ENST00000430711 RBM27Q9P2N5 1060 aaKnown RBP8.92□□□□□ -0.98
COL28A1-202ENST00000430711 ZDHHC9Q9Y397 364 aa8.92□□□□□ -0.98
COL28A1-202ENST00000430711 ARHGAP45Q92619 1136 aa8.92□□□□□ -0.98
COL28A1-202ENST00000430711 COG3Q96JB2 828 aa8.92□□□□□ -0.98
COL28A1-202ENST00000430711 CEP170BQ9Y4F5 1589 aaPredicted RBP8.91□□□□□ -0.98
COL28A1-202ENST00000430711 RGPD1P0DJD0 1748 aa8.91□□□□□ -0.98
COL28A1-202ENST00000430711 MAP3K19Q56UN5 1328 aa8.91□□□□□ -0.98
COL28A1-202ENST00000430711 CDC45O75419 566 aa8.91□□□□□ -0.98
COL28A1-202ENST00000430711 USP26Q9BXU7 913 aa8.91□□□□□ -0.98
COL28A1-202ENST00000430711 RGPD8O14715 1765 aaPredicted RBP8.91□□□□□ -0.98
COL28A1-202ENST00000430711 BAG4O95429 457 aaKnown RBP8.91□□□□□ -0.98
COL28A1-202ENST00000430711 PALD1Q9ULE6 856 aa8.91□□□□□ -0.98
COL28A1-202ENST00000430711 EXOC6BQ9Y2D4 811 aa8.91□□□□□ -0.98
COL28A1-202ENST00000430711 CRB1P82279 1406 aa8.91□□□□□ -0.98
COL28A1-202ENST00000430711 TUBGCP6Q96RT7 1819 aa8.9□□□□□ -0.98
COL28A1-202ENST00000430711 ACEP12821 1306 aa8.9□□□□□ -0.98
COL28A1-202ENST00000430711 DDX11L8A8MPP1 907 aa8.9□□□□□ -0.98
COL28A1-202ENST00000430711 HSP90AA1P07900 732 aaKnown RBP8.9□□□□□ -0.98
COL28A1-202ENST00000430711 INTS3Q68E01 1043 aaKnown RBP8.9□□□□□ -0.98
COL28A1-202ENST00000430711 ANKRD44Q8N8A2 993 aa8.9□□□□□ -0.98
COL28A1-202ENST00000430711 AATKQ6ZMQ8 1374 aa8.9□□□□□ -0.98
COL28A1-202ENST00000430711 CHL1O00533 1208 aa8.89□□□□□ -0.99
COL28A1-202ENST00000430711 MTHFSDQ2M296 383 aaKnown RBP8.89□□□□□ -0.99
COL28A1-202ENST00000430711 SLC4A10Q6U841 1118 aa8.89□□□□□ -0.99
COL28A1-202ENST00000430711 NOL8Q76FK4 1167 aaKnown RBP8.89□□□□□ -0.99
COL28A1-202ENST00000430711 UNC5CLQ8IV45 518 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms