RNA–Protein interactions for RNA: ENST00000430200.1

HDAC4-202, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 578 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-202ENST00000430200 AMPHP49418 695 aa16.47■□□□□ 0.23
HDAC4-202ENST00000430200 NBPF6Q5VWK0 638 aa16.47■□□□□ 0.23
HDAC4-202ENST00000430200 NBPF4Q96M43 638 aa16.47■□□□□ 0.23
HDAC4-202ENST00000430200 EMILIN1Q9Y6C2 1016 aa16.47■□□□□ 0.23
HDAC4-202ENST00000430200 INSRP06213 1382 aa16.47■□□□□ 0.23
HDAC4-202ENST00000430200 FLT4P35916 1363 aa16.47■□□□□ 0.23
HDAC4-202ENST00000430200 SLC24A1O60721 1099 aa16.46■□□□□ 0.23
HDAC4-202ENST00000430200 HSP90AB2PQ58FF8 381 aa16.46■□□□□ 0.23
HDAC4-202ENST00000430200 NBPF14Q5TI25 921 aa16.45■□□□□ 0.22
HDAC4-202ENST00000430200 GOLGB1Q14789 3259 aaKnown RBP16.44■□□□□ 0.22
HDAC4-202ENST00000430200 HSPA5P11021 654 aaKnown RBP16.44■□□□□ 0.22
HDAC4-202ENST00000430200 ZNF827Q17R98 1081 aa16.44■□□□□ 0.22
HDAC4-202ENST00000430200 LRRC4BQ9NT99 713 aa16.44■□□□□ 0.22
HDAC4-202ENST00000430200 SMG6Q86US8 1419 aaKnown RBP16.44■□□□□ 0.22
HDAC4-202ENST00000430200 VIRMAQ69YN4 1812 aaKnown RBP16.43■□□□□ 0.22
HDAC4-202ENST00000430200 DDX54Q8TDD1 881 aaKnown RBP16.43■□□□□ 0.22
HDAC4-202ENST00000430200 KIF24Q5T7B8 1368 aa16.42■□□□□ 0.22
HDAC4-202ENST00000430200 CDCA8Q53HL2 280 aa16.42■□□□□ 0.22
HDAC4-202ENST00000430200 CCER1Q8TC90 406 aaPredicted RBP16.41■□□□□ 0.22
HDAC4-202ENST00000430200 UBR3Q6ZT12 1888 aa16.4■□□□□ 0.22
HDAC4-202ENST00000430200 ZBTB7AO95365 584 aa16.4■□□□□ 0.22
HDAC4-202ENST00000430200 KCNQ4P56696 695 aa16.4■□□□□ 0.22
HDAC4-202ENST00000430200 PTGER2P43116 358 aa16.39■□□□□ 0.21
HDAC4-202ENST00000430200 SLC15A2Q16348 729 aa16.39■□□□□ 0.21
HDAC4-202ENST00000430200 POLR3GLQ9BT43 218 aa16.39■□□□□ 0.21
HDAC4-202ENST00000430200 ZCRB1Q8TBF4 217 aaKnown RBP16.38■□□□□ 0.21
HDAC4-202ENST00000430200 SPON1Q9HCB6 807 aa16.38■□□□□ 0.21
HDAC4-202ENST00000430200 C4BP0C0L5 1744 aa16.37■□□□□ 0.21
HDAC4-202ENST00000430200 PRIM1P49642 420 aaKnown RBP16.37■□□□□ 0.21
HDAC4-202ENST00000430200 SGIP1Q9BQI5 828 aa16.37■□□□□ 0.21
HDAC4-202ENST00000430200 EIF4G2P78344 907 aaKnown RBP eCLIP16.36■□□□□ 0.21
HDAC4-202ENST00000430200 STK32BQ9NY57 414 aa16.36■□□□□ 0.21
HDAC4-202ENST00000430200 CGNL1Q0VF96 1302 aa16.36■□□□□ 0.21
HDAC4-202ENST00000430200 CYP27B1O15528 508 aa16.35■□□□□ 0.21
HDAC4-202ENST00000430200 AKT1S1Q96B36 256 aa16.35■□□□□ 0.21
HDAC4-202ENST00000430200 SYTL4Q96C24 671 aaPredicted RBP16.35■□□□□ 0.21
HDAC4-202ENST00000430200 POLKQ9UBT6 870 aa16.35■□□□□ 0.21
HDAC4-202ENST00000430200 ATF5Q9Y2D1 282 aaPredicted RBP16.35■□□□□ 0.21
HDAC4-202ENST00000430200 COL5A3P25940 1745 aaPredicted RBP16.35■□□□□ 0.21
HDAC4-202ENST00000430200 PPM1GO15355 546 aaPredicted RBP16.33■□□□□ 0.2
HDAC4-202ENST00000430200 TNNT2P45379 298 aaPredicted RBP16.33■□□□□ 0.2
HDAC4-202ENST00000430200 RAPGEF4Q8WZA2 1011 aa16.33■□□□□ 0.2
HDAC4-202ENST00000430200 WASHC2AQ641Q2 1341 aa16.33■□□□□ 0.2
HDAC4-202ENST00000430200 PNPLA7Q6ZV29 1317 aa16.33■□□□□ 0.2
HDAC4-202ENST00000430200 PCDH11XQ9BZA7 1347 aa16.33■□□□□ 0.2
HDAC4-202ENST00000430200 PCDH11YQ9BZA8 1340 aa16.33■□□□□ 0.2
HDAC4-202ENST00000430200 EYA1Q99502 592 aa16.32■□□□□ 0.2
HDAC4-202ENST00000430200 PANK3Q9H999 370 aa16.32■□□□□ 0.2
HDAC4-202ENST00000430200 SCN11AQ9UI33 1791 aa16.32■□□□□ 0.2
HDAC4-202ENST00000430200 CHD4Q14839 1912 aa16.31■□□□□ 0.2
HDAC4-202ENST00000430200 TATP17735 454 aaPredicted RBP16.31■□□□□ 0.2
HDAC4-202ENST00000430200 EIF4A2Q14240 407 aaKnown RBP16.31■□□□□ 0.2
HDAC4-202ENST00000430200 PPP1R1BQ9UD71 204 aaPredicted RBP16.31■□□□□ 0.2
HDAC4-202ENST00000430200 KIF7Q2M1P5 1343 aa16.3■□□□□ 0.2
HDAC4-202ENST00000430200 C4AP0C0L4 1744 aa16.29■□□□□ 0.2
HDAC4-202ENST00000430200 MTFR1LQ9H019 292 aa16.29■□□□□ 0.2
HDAC4-202ENST00000430200 ZNF831Q5JPB2 1677 aa16.29■□□□□ 0.2
HDAC4-202ENST00000430200 TJP1Q07157 1748 aa16.28■□□□□ 0.2
HDAC4-202ENST00000430200 PALLDQ8WX93 1383 aa16.28■□□□□ 0.2
HDAC4-202ENST00000430200 IGSF1Q8N6C5 1336 aa16.28■□□□□ 0.2
HDAC4-202ENST00000430200 SLC27A3Q5K4L6 730 aa16.28■□□□□ 0.2
HDAC4-202ENST00000430200 AMIGO3Q86WK7 504 aa16.27■□□□□ 0.2
HDAC4-202ENST00000430200 FHDC1Q9C0D6 1143 aaPredicted RBP16.27■□□□□ 0.2
HDAC4-202ENST00000430200 CCNL1Q9UK58 526 aaPredicted RBP16.27■□□□□ 0.2
HDAC4-202ENST00000430200 KDM6AO15550 1401 aaPredicted RBP16.27■□□□□ 0.19
HDAC4-202ENST00000430200 CICQ96RK0 1608 aaPredicted RBP16.27■□□□□ 0.19
HDAC4-202ENST00000430200 MYH14Q7Z406 1995 aaKnown RBP16.26■□□□□ 0.19
HDAC4-202ENST00000430200 ADAMTS7Q9UKP4 1686 aa16.25■□□□□ 0.19
HDAC4-202ENST00000430200 KIAA1551Q9HCM1 1747 aa16.25■□□□□ 0.19
HDAC4-202ENST00000430200 COL3A1P02461 1466 aaPredicted RBP16.24■□□□□ 0.19
HDAC4-202ENST00000430200 NKX1-1Q15270 411 aaPredicted RBP16.24■□□□□ 0.19
HDAC4-202ENST00000430200 MPRIPQ6WCQ1 1025 aa16.24■□□□□ 0.19
HDAC4-202ENST00000430200 AEBP1Q8IUX7 1158 aa16.24■□□□□ 0.19
HDAC4-202ENST00000430200 MAP3K5Q99683 1374 aa16.24■□□□□ 0.19
HDAC4-202ENST00000430200 AMER1Q5JTC6 1135 aaPredicted RBP16.23■□□□□ 0.19
HDAC4-202ENST00000430200 SMIM5Q71RC9 77 aa16.23■□□□□ 0.19
HDAC4-202ENST00000430200 PIGBQ92521 554 aa16.23■□□□□ 0.19
HDAC4-202ENST00000430200 KDRP35968 1356 aa16.23■□□□□ 0.19
HDAC4-202ENST00000430200 PHKG2P15735 406 aa16.22■□□□□ 0.19
HDAC4-202ENST00000430200 SYT17Q9BSW7 474 aa16.22■□□□□ 0.19
HDAC4-202ENST00000430200 COL23A1Q86Y22 540 aaPredicted RBP16.21■□□□□ 0.19
HDAC4-202ENST00000430200 TFCP2L1Q9NZI6 479 aa16.21■□□□□ 0.19
HDAC4-202ENST00000430200 PLEKHG2Q9H7P9 1386 aa16.21■□□□□ 0.19
HDAC4-202ENST00000430200 SIPA1L3O60292 1781 aaPredicted RBP16.21■□□□□ 0.18
HDAC4-202ENST00000430200 ARXQ96QS3 562 aa16.2■□□□□ 0.18
HDAC4-202ENST00000430200 UBR2Q8IWV8 1755 aa16.2■□□□□ 0.18
HDAC4-202ENST00000430200 KIF13BQ9NQT8 1826 aa16.19■□□□□ 0.18
HDAC4-202ENST00000430200 SPG7Q9UQ90 795 aa16.19■□□□□ 0.18
HDAC4-202ENST00000430200 MRC1P22897 1456 aa16.18■□□□□ 0.18
HDAC4-202ENST00000430200 MSL1Q68DK7 614 aa16.18■□□□□ 0.18
HDAC4-202ENST00000430200 MORC1Q86VD1 984 aa16.18■□□□□ 0.18
HDAC4-202ENST00000430200 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.18■□□□□ 0.18
HDAC4-202ENST00000430200 ASAP1Q9ULH1 1129 aa16.18■□□□□ 0.18
HDAC4-202ENST00000430200 PER1O15534 1290 aaPredicted RBP16.17■□□□□ 0.18
HDAC4-202ENST00000430200 ITPK1Q13572 414 aa16.17■□□□□ 0.18
HDAC4-202ENST00000430200 LINC00116Q8NCU8 138 aa16.17■□□□□ 0.18
HDAC4-202ENST00000430200 NLGN2Q8NFZ4 835 aa16.17■□□□□ 0.18
HDAC4-202ENST00000430200 SLC4A9Q96Q91 983 aa16.16■□□□□ 0.18
HDAC4-202ENST00000430200 BRCA1P38398 1863 aaKnown RBP16.16■□□□□ 0.18
HDAC4-202ENST00000430200 N4BP2Q86UW6 1770 aaPredicted RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms