RNA–Protein interactions for RNA: ENST00000423214.1

COL18A1-205, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 5

Gene COL18A1, Length 839 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-205ENST00000423214 SYTL4Q96C24 671 aaPredicted RBP22.54■■□□□ 1.2
COL18A1-205ENST00000423214 MAP2P11137 1827 aaKnown RBP22.54■■□□□ 1.2
COL18A1-205ENST00000423214 FYB1O15117 783 aa22.52■■□□□ 1.2
COL18A1-205ENST00000423214 C5P01031 1676 aa22.52■■□□□ 1.2
COL18A1-205ENST00000423214 COL24A1Q17RW2 1714 aa22.51■■□□□ 1.19
COL18A1-205ENST00000423214 PKD1L3Q7Z443 1732 aa22.51■■□□□ 1.19
COL18A1-205ENST00000423214 SLC27A3Q5K4L6 730 aa22.51■■□□□ 1.19
COL18A1-205ENST00000423214 ZCRB1Q8TBF4 217 aaKnown RBP22.51■■□□□ 1.19
COL18A1-205ENST00000423214 ITGB4P16144 1822 aa22.51■■□□□ 1.19
COL18A1-205ENST00000423214 FLT4P35916 1363 aa22.5■■□□□ 1.19
COL18A1-205ENST00000423214 ZNF827Q17R98 1081 aa22.5■■□□□ 1.19
COL18A1-205ENST00000423214 NSD3Q9BZ95 1437 aa22.49■■□□□ 1.19
COL18A1-205ENST00000423214 RAPGEF4Q8WZA2 1011 aa22.49■■□□□ 1.19
COL18A1-205ENST00000423214 LRRC4BQ9NT99 713 aa22.49■■□□□ 1.19
COL18A1-205ENST00000423214 TAF1LQ8IZX4 1826 aa22.49■■□□□ 1.19
COL18A1-205ENST00000423214 USHBP1Q8N6Y0 703 aa22.48■■□□□ 1.19
COL18A1-205ENST00000423214 CGNL1Q0VF96 1302 aa22.48■■□□□ 1.19
COL18A1-205ENST00000423214 NSD2O96028 1365 aa22.48■■□□□ 1.19
COL18A1-205ENST00000423214 INSRP06213 1382 aa22.48■■□□□ 1.19
COL18A1-205ENST00000423214 KIF24Q5T7B8 1368 aa22.48■■□□□ 1.19
COL18A1-205ENST00000423214 PRIM1P49642 420 aaKnown RBP22.47■■□□□ 1.19
COL18A1-205ENST00000423214 FHDC1Q9C0D6 1143 aaPredicted RBP22.47■■□□□ 1.19
COL18A1-205ENST00000423214 TOGARAM1Q9Y4F4 1720 aa22.47■■□□□ 1.19
COL18A1-205ENST00000423214 NBPF6Q5VWK0 638 aa22.46■■□□□ 1.19
COL18A1-205ENST00000423214 NBPF4Q96M43 638 aa22.46■■□□□ 1.19
COL18A1-205ENST00000423214 TATP17735 454 aaPredicted RBP22.45■■□□□ 1.18
COL18A1-205ENST00000423214 SGIP1Q9BQI5 828 aa22.45■■□□□ 1.18
COL18A1-205ENST00000423214 AKT1S1Q96B36 256 aa22.44■■□□□ 1.18
COL18A1-205ENST00000423214 ARXQ96QS3 562 aa22.44■■□□□ 1.18
COL18A1-205ENST00000423214 SYT17Q9BSW7 474 aa22.44■■□□□ 1.18
COL18A1-205ENST00000423214 PCDH11XQ9BZA7 1347 aa22.44■■□□□ 1.18
COL18A1-205ENST00000423214 PCDH11YQ9BZA8 1340 aa22.44■■□□□ 1.18
COL18A1-205ENST00000423214 HSP90AB2PQ58FF8 381 aa22.42■■□□□ 1.18
COL18A1-205ENST00000423214 TFCP2L1Q9NZI6 479 aa22.42■■□□□ 1.18
COL18A1-205ENST00000423214 TIMELESSQ9UNS1 1208 aa22.42■■□□□ 1.18
COL18A1-205ENST00000423214 MAP3K5Q99683 1374 aa22.41■■□□□ 1.18
COL18A1-205ENST00000423214 PNPLA7Q6ZV29 1317 aa22.41■■□□□ 1.18
COL18A1-205ENST00000423214 SLC16A10Q8TF71 515 aa22.41■■□□□ 1.18
COL18A1-205ENST00000423214 CCNL1Q9UK58 526 aaPredicted RBP22.41■■□□□ 1.18
COL18A1-205ENST00000423214 CLSPNQ9HAW4 1339 aa22.4■■□□□ 1.18
COL18A1-205ENST00000423214 KCNQ4P56696 695 aa22.4■■□□□ 1.18
COL18A1-205ENST00000423214 UTRNP46939 3433 aa22.39■■□□□ 1.18
COL18A1-205ENST00000423214 POLD1P28340 1107 aa22.39■■□□□ 1.17
COL18A1-205ENST00000423214 CARD14Q9BXL6 1004 aa22.39■■□□□ 1.17
COL18A1-205ENST00000423214 EMILIN1Q9Y6C2 1016 aa22.39■■□□□ 1.17
COL18A1-205ENST00000423214 KLHL34Q8N239 644 aa22.38■■□□□ 1.17
COL18A1-205ENST00000423214 PCGF6Q9BYE7 350 aa22.38■■□□□ 1.17
COL18A1-205ENST00000423214 PPM1GO15355 546 aaPredicted RBP22.37■■□□□ 1.17
COL18A1-205ENST00000423214 POLR3GLQ9BT43 218 aa22.36■■□□□ 1.17
COL18A1-205ENST00000423214 NCAPD2Q15021 1401 aa22.36■■□□□ 1.17
COL18A1-205ENST00000423214 C4BP0C0L5 1744 aa22.36■■□□□ 1.17
COL18A1-205ENST00000423214 UBR3Q6ZT12 1888 aa22.34■■□□□ 1.17
COL18A1-205ENST00000423214 MSH5O43196 834 aa22.34■■□□□ 1.17
COL18A1-205ENST00000423214 PALLDQ8WX93 1383 aa22.34■■□□□ 1.17
COL18A1-205ENST00000423214 MPRIPQ6WCQ1 1025 aa22.31■■□□□ 1.16
COL18A1-205ENST00000423214 CYP27B1O15528 508 aa22.3■■□□□ 1.16
COL18A1-205ENST00000423214 HMGB2P26583 209 aaKnown RBP22.3■■□□□ 1.16
COL18A1-205ENST00000423214 GPR162Q16538 588 aa22.29■■□□□ 1.16
COL18A1-205ENST00000423214 SPG7Q9UQ90 795 aa22.29■■□□□ 1.16
COL18A1-205ENST00000423214 WASHC2AQ641Q2 1341 aa22.29■■□□□ 1.16
COL18A1-205ENST00000423214 PELP1Q8IZL8 1130 aaKnown RBP22.27■■□□□ 1.16
COL18A1-205ENST00000423214 SMARCC1Q92922 1105 aaPredicted RBP22.27■■□□□ 1.16
COL18A1-205ENST00000423214 COL23A1Q86Y22 540 aaPredicted RBP22.26■■□□□ 1.15
COL18A1-205ENST00000423214 GOLGB1Q14789 3259 aaKnown RBP22.25■■□□□ 1.15
COL18A1-205ENST00000423214 EIF4G2P78344 907 aaKnown RBP eCLIP22.25■■□□□ 1.155e-6■■□□□ 12.2
COL18A1-205ENST00000423214 ZNF784Q8NCA9 323 aaPredicted RBP22.25■■□□□ 1.15
COL18A1-205ENST00000423214 TNNT2P45379 298 aaPredicted RBP22.24■■□□□ 1.15
COL18A1-205ENST00000423214 MSL1Q68DK7 614 aa22.24■■□□□ 1.15
COL18A1-205ENST00000423214 AK7Q96M32 723 aa22.24■■□□□ 1.15
COL18A1-205ENST00000423214 EYA1Q99502 592 aa22.24■■□□□ 1.15
COL18A1-205ENST00000423214 POLKQ9UBT6 870 aa22.24■■□□□ 1.15
COL18A1-205ENST00000423214 FLAD1Q8NFF5 587 aa22.23■■□□□ 1.15
COL18A1-205ENST00000423214 NLGN2Q8NFZ4 835 aa22.22■■□□□ 1.15
COL18A1-205ENST00000423214 HSPA5P11021 654 aaKnown RBP22.21■■□□□ 1.15
COL18A1-205ENST00000423214 NKX1-1Q15270 411 aaPredicted RBP22.21■■□□□ 1.15
COL18A1-205ENST00000423214 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.21■■□□□ 1.15
COL18A1-205ENST00000423214 TMOD3Q9NYL9 352 aa22.21■■□□□ 1.15
COL18A1-205ENST00000423214 PLEKHG2Q9H7P9 1386 aa22.21■■□□□ 1.15
COL18A1-205ENST00000423214 EIF4A2Q14240 407 aaKnown RBP22.2■■□□□ 1.14
COL18A1-205ENST00000423214 PIGBQ92521 554 aa22.2■■□□□ 1.14
COL18A1-205ENST00000423214 VIRMAQ69YN4 1812 aaKnown RBP22.2■■□□□ 1.14
COL18A1-205ENST00000423214 IFNL2Q8IZJ0 200 aa22.19■■□□□ 1.14
COL18A1-205ENST00000423214 CCER1Q8TC90 406 aaPredicted RBP22.19■■□□□ 1.14
COL18A1-205ENST00000423214 ZNF831Q5JPB2 1677 aa22.19■■□□□ 1.14
COL18A1-205ENST00000423214 COL5A3P25940 1745 aaPredicted RBP22.19■■□□□ 1.14
COL18A1-205ENST00000423214 PHF14O94880 888 aa22.18■■□□□ 1.14
COL18A1-205ENST00000423214 PHKG2P15735 406 aa22.17■■□□□ 1.14
COL18A1-205ENST00000423214 IGSF1Q8N6C5 1336 aa22.16■■□□□ 1.14
COL18A1-205ENST00000423214 LOC102724428A0A0B4J2F2 783 aa22.16■■□□□ 1.14
COL18A1-205ENST00000423214 SIK1P57059 783 aa22.16■■□□□ 1.14
COL18A1-205ENST00000423214 PANK3Q9H999 370 aa22.15■■□□□ 1.14
COL18A1-205ENST00000423214 SCN11AQ9UI33 1791 aa22.13■■□□□ 1.13
COL18A1-205ENST00000423214 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.13■■□□□ 1.13
COL18A1-205ENST00000423214 SSFA2P28290 1259 aa22.13■■□□□ 1.13
COL18A1-205ENST00000423214 C4AP0C0L4 1744 aa22.12■■□□□ 1.13
COL18A1-205ENST00000423214 GRIN3BO60391 1043 aa22.12■■□□□ 1.13
COL18A1-205ENST00000423214 LINC00116Q8NCU8 138 aa22.12■■□□□ 1.13
COL18A1-205ENST00000423214 ASAP1Q9ULH1 1129 aa22.12■■□□□ 1.13
COL18A1-205ENST00000423214 KIF13BQ9NQT8 1826 aa22.11■■□□□ 1.13
COL18A1-205ENST00000423214 ATP6V1AP38606 617 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms