RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 TRIM35Q9UPQ4 493 aa22.34■■□□□ 1.17
CCDC28B-202ENST00000421922 PARP4Q9UKK3 1724 aaKnown RBP22.34■■□□□ 1.17
CCDC28B-202ENST00000421922 LRP6O75581 1613 aa22.34■■□□□ 1.17
CCDC28B-202ENST00000421922 NWD2Q9ULI1 1742 aa22.33■■□□□ 1.17
CCDC28B-202ENST00000421922 SLFN5Q08AF3 891 aa22.32■■□□□ 1.16
CCDC28B-202ENST00000421922 MYH16Q9H6N6 1097 aa22.32■■□□□ 1.16
CCDC28B-202ENST00000421922 CRB1P82279 1406 aa22.32■■□□□ 1.16
CCDC28B-202ENST00000421922 IL16Q14005 1332 aa22.32■■□□□ 1.16
CCDC28B-202ENST00000421922 MAP3K5Q99683 1374 aa22.31■■□□□ 1.16
CCDC28B-202ENST00000421922 PLEKHG2Q9H7P9 1386 aa22.31■■□□□ 1.16
CCDC28B-202ENST00000421922 LARP1Q6PKG0 1096 aaKnown RBP22.31■■□□□ 1.16
CCDC28B-202ENST00000421922 CARD10Q9BWT7 1032 aa22.31■■□□□ 1.16
CCDC28B-202ENST00000421922 NRAPQ86VF7 1730 aa22.3■■□□□ 1.16
CCDC28B-202ENST00000421922 C1orf141Q5JVX7 400 aa22.3■■□□□ 1.16
CCDC28B-202ENST00000421922 ZNF530Q6P9A1 599 aaPredicted RBP22.3■■□□□ 1.16
CCDC28B-202ENST00000421922 UPF1Q92900 1129 aaKnown RBP eCLIP22.3■■□□□ 1.16
CCDC28B-202ENST00000421922 GNAT3A8MTJ3 354 aa22.29■■□□□ 1.16
CCDC28B-202ENST00000421922 MEX3CQ5U5Q3 659 aaKnown RBP22.29■■□□□ 1.16
CCDC28B-202ENST00000421922 SPG7Q9UQ90 795 aa22.29■■□□□ 1.16
CCDC28B-202ENST00000421922 HTATSF1O43719 755 aaKnown RBP22.28■■□□□ 1.16
CCDC28B-202ENST00000421922 MEGF6O75095 1541 aa22.28■■□□□ 1.16
CCDC28B-202ENST00000421922 DUSP27Q5VZP5 1158 aa22.27■■□□□ 1.16
CCDC28B-202ENST00000421922 LAS1LQ9Y4W2 734 aaKnown RBP22.27■■□□□ 1.16
CCDC28B-202ENST00000421922 C8orf37Q96NL8 207 aa22.26■■□□□ 1.15
CCDC28B-202ENST00000421922 PKD1L3Q7Z443 1732 aa22.26■■□□□ 1.15
CCDC28B-202ENST00000421922 GNAI1P63096 354 aa22.25■■□□□ 1.15
CCDC28B-202ENST00000421922 AKAP4Q5JQC9 854 aa22.25■■□□□ 1.15
CCDC28B-202ENST00000421922 NGLY1Q96IV0 654 aa22.25■■□□□ 1.15
CCDC28B-202ENST00000421922 THUMPD2Q9BTF0 503 aaKnown RBP22.25■■□□□ 1.15
CCDC28B-202ENST00000421922 SPINK5Q9NQ38 1064 aaPredicted RBP22.25■■□□□ 1.15
CCDC28B-202ENST00000421922 USP35Q9P2H5 1018 aa22.25■■□□□ 1.15
CCDC28B-202ENST00000421922 IL2RBP14784 551 aa22.24■■□□□ 1.15
CCDC28B-202ENST00000421922 DCTN1Q14203 1278 aa22.24■■□□□ 1.15
CCDC28B-202ENST00000421922 MCM10Q7L590 875 aa22.24■■□□□ 1.15
CCDC28B-202ENST00000421922 OVOS2A0A0G2JMS6 1433 aa22.24■■□□□ 1.15
CCDC28B-202ENST00000421922 VIRMAQ69YN4 1812 aaKnown RBP22.23■■□□□ 1.15
CCDC28B-202ENST00000421922 ZNF772Q68DY9 489 aaPredicted RBP22.23■■□□□ 1.15
CCDC28B-202ENST00000421922 TRMT2AQ8IZ69 625 aaKnown RBP22.23■■□□□ 1.15
CCDC28B-202ENST00000421922 IFT57Q9NWB7 429 aa22.23■■□□□ 1.15
CCDC28B-202ENST00000421922 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.23■■□□□ 1.15
CCDC28B-202ENST00000421922 SLIT2O94813 1529 aa22.23■■□□□ 1.15
CCDC28B-202ENST00000421922 LRRC37A3O60309 1634 aa22.23■■□□□ 1.15
CCDC28B-202ENST00000421922 CCDC9Q9Y3X0 531 aaKnown RBP22.23■■□□□ 1.15
CCDC28B-202ENST00000421922 WNK3Q9BYP7 1800 aa22.22■■□□□ 1.15
CCDC28B-202ENST00000421922 NEFLP07196 543 aa22.22■■□□□ 1.15
CCDC28B-202ENST00000421922 FANCIQ9NVI1 1328 aa22.21■■□□□ 1.15
CCDC28B-202ENST00000421922 RCAN3Q9UKA8 241 aa22.21■■□□□ 1.15
CCDC28B-202ENST00000421922 TSR2Q969E8 191 aaKnown RBP22.2■■□□□ 1.14
CCDC28B-202ENST00000421922 UNC5CLQ8IV45 518 aa22.19■■□□□ 1.14
CCDC28B-202ENST00000421922 IFNL2Q8IZJ0 200 aa22.19■■□□□ 1.14
CCDC28B-202ENST00000421922 CFAP44Q96MT7 982 aa22.19■■□□□ 1.14
CCDC28B-202ENST00000421922 SUPT16HQ9Y5B9 1047 aaKnown RBP22.19■■□□□ 1.14
CCDC28B-202ENST00000421922 PCDH11XQ9BZA7 1347 aa22.19■■□□□ 1.14
CCDC28B-202ENST00000421922 PCDH11YQ9BZA8 1340 aa22.19■■□□□ 1.14
CCDC28B-202ENST00000421922 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.18■■□□□ 1.14
CCDC28B-202ENST00000421922 ZCRB1Q8TBF4 217 aaKnown RBP22.18■■□□□ 1.14
CCDC28B-202ENST00000421922 HSP90AB1P08238 724 aaKnown RBP22.17■■□□□ 1.14
CCDC28B-202ENST00000421922 TEFQ10587 303 aa22.16■■□□□ 1.14
CCDC28B-202ENST00000421922 THRAP3Q9Y2W1 955 aaKnown RBP22.16■■□□□ 1.14
CCDC28B-202ENST00000421922 PHKG2P15735 406 aa22.15■■□□□ 1.14
CCDC28B-202ENST00000421922 MPRIPQ6WCQ1 1025 aa22.15■■□□□ 1.14
CCDC28B-202ENST00000421922 CDCA7Q9BWT1 371 aaPredicted RBP22.15■■□□□ 1.14
CCDC28B-202ENST00000421922 SCN11AQ9UI33 1791 aa22.15■■□□□ 1.14
CCDC28B-202ENST00000421922 CT47B1P0C2W7 299 aaPredicted RBP22.14■■□□□ 1.14
CCDC28B-202ENST00000421922 ZNF853P0CG23 659 aa22.14■■□□□ 1.14
CCDC28B-202ENST00000421922 RXRBP28702 533 aa22.14■■□□□ 1.14
CCDC28B-202ENST00000421922 MBIPQ9NS73 344 aa22.14■■□□□ 1.14
CCDC28B-202ENST00000421922 TSPYL4Q9UJ04 414 aa22.14■■□□□ 1.14
CCDC28B-202ENST00000421922 USP21Q9UK80 565 aa22.14■■□□□ 1.14
CCDC28B-202ENST00000421922 SPATA31A1Q5TZJ5 1347 aa22.14■■□□□ 1.14
CCDC28B-202ENST00000421922 RNMTO43148 476 aaKnown RBP22.14■■□□□ 1.13
CCDC28B-202ENST00000421922 EXOSC9Q06265 439 aaKnown RBP22.14■■□□□ 1.13
CCDC28B-202ENST00000421922 IL17REQ8NFR9 667 aa22.14■■□□□ 1.13
CCDC28B-202ENST00000421922 SPATA31A5Q5VU36 1347 aa22.14■■□□□ 1.13
CCDC28B-202ENST00000421922 SPATA31A7Q8IWB4 1347 aa22.14■■□□□ 1.13
CCDC28B-202ENST00000421922 CEMIPQ8WUJ3 1361 aa22.13■■□□□ 1.13
CCDC28B-202ENST00000421922 FNBP4Q8N3X1 1017 aaPredicted RBP22.13■■□□□ 1.13
CCDC28B-202ENST00000421922 SHANK3Q9BYB0 1731 aa22.12■■□□□ 1.13
CCDC28B-202ENST00000421922 DISP2A7MBM2 1401 aa22.12■■□□□ 1.13
CCDC28B-202ENST00000421922 TAF7Q15545 349 aaPredicted RBP22.12■■□□□ 1.13
CCDC28B-202ENST00000421922 VPS72Q15906 364 aa22.12■■□□□ 1.13
CCDC28B-202ENST00000421922 ADAMTS7Q9UKP4 1686 aa22.11■■□□□ 1.13
CCDC28B-202ENST00000421922 BCL9LQ86UU0 1499 aa22.11■■□□□ 1.13
CCDC28B-202ENST00000421922 CHL1O00533 1208 aa22.11■■□□□ 1.13
CCDC28B-202ENST00000421922 DCAF5Q96JK2 942 aa22.11■■□□□ 1.13
CCDC28B-202ENST00000421922 BABAM1Q9NWV8 329 aa22.11■■□□□ 1.13
CCDC28B-202ENST00000421922 AFF2P51816 1311 aa22.1■■□□□ 1.13
CCDC28B-202ENST00000421922 CYP27B1O15528 508 aa22.1■■□□□ 1.13
CCDC28B-202ENST00000421922 DDX54Q8TDD1 881 aaKnown RBP22.1■■□□□ 1.13
CCDC28B-202ENST00000421922 LGR6Q9HBX8 967 aa22.1■■□□□ 1.13
CCDC28B-202ENST00000421922 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.09■■□□□ 1.13
CCDC28B-202ENST00000421922 TNS2Q63HR2 1409 aa22.09■■□□□ 1.13
CCDC28B-202ENST00000421922 EXOC5O00471 708 aa22.08■■□□□ 1.13
CCDC28B-202ENST00000421922 SIPA1L3O60292 1781 aaPredicted RBP22.08■■□□□ 1.12
CCDC28B-202ENST00000421922 KDM6AO15550 1401 aaPredicted RBP22.07■■□□□ 1.12
CCDC28B-202ENST00000421922 KDM3BQ7LBC6 1761 aa22.07■■□□□ 1.12
CCDC28B-202ENST00000421922 BARGINQ6ZT62 677 aa22.06■■□□□ 1.12
CCDC28B-202ENST00000421922 MIS18AQ9NYP9 233 aa22.06■■□□□ 1.12
CCDC28B-202ENST00000421922 GTF3C3Q9Y5Q9 886 aa22.06■■□□□ 1.12
CCDC28B-202ENST00000421922 BTBD11A6QL63 1104 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms