RNA–Protein interactions for RNA: ENST00000420813.5

MSH6-203, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 491 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-203ENST00000420813 ZBTB7AO95365 584 aa24.15■■□□□ 1.46
MSH6-203ENST00000420813 NBPF6Q5VWK0 638 aa24.15■■□□□ 1.46
MSH6-203ENST00000420813 NBPF4Q96M43 638 aa24.15■■□□□ 1.46
MSH6-203ENST00000420813 CARD14Q9BXL6 1004 aa24.15■■□□□ 1.46
MSH6-203ENST00000420813 NSD3Q9BZ95 1437 aa24.15■■□□□ 1.46
MSH6-203ENST00000420813 PCGF6Q9BYE7 350 aa24.14■■□□□ 1.45
MSH6-203ENST00000420813 PTGER2P43116 358 aa24.13■■□□□ 1.45
MSH6-203ENST00000420813 SLC27A3Q5K4L6 730 aa24.13■■□□□ 1.45
MSH6-203ENST00000420813 MAP2P11137 1827 aaKnown RBP24.12■■□□□ 1.45
MSH6-203ENST00000420813 MTFR1LQ9H019 292 aa24.12■■□□□ 1.45
MSH6-203ENST00000420813 HSP90AB2PQ58FF8 381 aa24.11■■□□□ 1.45
MSH6-203ENST00000420813 RAPGEF4Q8WZA2 1011 aa24.11■■□□□ 1.45
MSH6-203ENST00000420813 LRRC4BQ9NT99 713 aa24.11■■□□□ 1.45
MSH6-203ENST00000420813 PRIM1P49642 420 aaKnown RBP24.1■■□□□ 1.45
MSH6-203ENST00000420813 ATF5Q9Y2D1 282 aaPredicted RBP24.1■■□□□ 1.45
MSH6-203ENST00000420813 NSD2O96028 1365 aa24.1■■□□□ 1.45
MSH6-203ENST00000420813 TUBGCP6Q96RT7 1819 aa24.1■■□□□ 1.45
MSH6-203ENST00000420813 DCAF8L1A6NGE4 600 aa24.09■■□□□ 1.45
MSH6-203ENST00000420813 USHBP1Q8N6Y0 703 aa24.09■■□□□ 1.45
MSH6-203ENST00000420813 SYTL4Q96C24 671 aaPredicted RBP24.09■■□□□ 1.45
MSH6-203ENST00000420813 ZNF827Q17R98 1081 aa24.08■■□□□ 1.45
MSH6-203ENST00000420813 PKD1L3Q7Z443 1732 aa24.07■■□□□ 1.44
MSH6-203ENST00000420813 TATP17735 454 aaPredicted RBP24.07■■□□□ 1.44
MSH6-203ENST00000420813 SGIP1Q9BQI5 828 aa24.07■■□□□ 1.44
MSH6-203ENST00000420813 COL24A1Q17RW2 1714 aa24.07■■□□□ 1.44
MSH6-203ENST00000420813 AKT1S1Q96B36 256 aa24.06■■□□□ 1.44
MSH6-203ENST00000420813 NCAPD2Q15021 1401 aa24.05■■□□□ 1.44
MSH6-203ENST00000420813 EMILIN1Q9Y6C2 1016 aa24.05■■□□□ 1.44
MSH6-203ENST00000420813 PCDH11XQ9BZA7 1347 aa24.05■■□□□ 1.44
MSH6-203ENST00000420813 PCDH11YQ9BZA8 1340 aa24.05■■□□□ 1.44
MSH6-203ENST00000420813 ITGB4P16144 1822 aa24.03■■□□□ 1.44
MSH6-203ENST00000420813 SLC16A10Q8TF71 515 aa24.02■■□□□ 1.44
MSH6-203ENST00000420813 WASHC2AQ641Q2 1341 aa24.01■■□□□ 1.43
MSH6-203ENST00000420813 EIF4G2P78344 907 aaKnown RBP eCLIP24■■□□□ 1.43
MSH6-203ENST00000420813 FHDC1Q9C0D6 1143 aaPredicted RBP24■■□□□ 1.43
MSH6-203ENST00000420813 TOGARAM1Q9Y4F4 1720 aa24■■□□□ 1.43
MSH6-203ENST00000420813 TAF1LQ8IZX4 1826 aa23.99■■□□□ 1.43
MSH6-203ENST00000420813 YY1P25490 414 aa23.99■■□□□ 1.43
MSH6-203ENST00000420813 ARXQ96QS3 562 aa23.99■■□□□ 1.43
MSH6-203ENST00000420813 SYT17Q9BSW7 474 aa23.99■■□□□ 1.43
MSH6-203ENST00000420813 MAP3K5Q99683 1374 aa23.99■■□□□ 1.43
MSH6-203ENST00000420813 C5P01031 1676 aa23.99■■□□□ 1.43
MSH6-203ENST00000420813 CCNL1Q9UK58 526 aaPredicted RBP23.98■■□□□ 1.43
MSH6-203ENST00000420813 PNPLA7Q6ZV29 1317 aa23.98■■□□□ 1.43
MSH6-203ENST00000420813 PPM1GO15355 546 aaPredicted RBP23.97■■□□□ 1.43
MSH6-203ENST00000420813 KCNQ4P56696 695 aa23.97■■□□□ 1.43
MSH6-203ENST00000420813 TFCP2L1Q9NZI6 479 aa23.97■■□□□ 1.43
MSH6-203ENST00000420813 CYP27B1O15528 508 aa23.96■■□□□ 1.43
MSH6-203ENST00000420813 POLR3GLQ9BT43 218 aa23.96■■□□□ 1.43
MSH6-203ENST00000420813 CHD4Q14839 1912 aa23.96■■□□□ 1.43
MSH6-203ENST00000420813 HSPA5P11021 654 aaKnown RBP23.95■■□□□ 1.42
MSH6-203ENST00000420813 HMGB2P26583 209 aaKnown RBP23.95■■□□□ 1.42
MSH6-203ENST00000420813 POLKQ9UBT6 870 aa23.95■■□□□ 1.42
MSH6-203ENST00000420813 CCER1Q8TC90 406 aaPredicted RBP23.94■■□□□ 1.42
MSH6-203ENST00000420813 EYA1Q99502 592 aa23.92■■□□□ 1.42
MSH6-203ENST00000420813 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.92■■□□□ 1.423e-7■■■■□ 25.1
MSH6-203ENST00000420813 SPG7Q9UQ90 795 aa23.92■■□□□ 1.42
MSH6-203ENST00000420813 PALLDQ8WX93 1383 aa23.91■■□□□ 1.42
MSH6-203ENST00000420813 PLEKHG2Q9H7P9 1386 aa23.91■■□□□ 1.42
MSH6-203ENST00000420813 POLD1P28340 1107 aa23.91■■□□□ 1.42
MSH6-203ENST00000420813 NKX1-1Q15270 411 aaPredicted RBP23.91■■□□□ 1.42
MSH6-203ENST00000420813 MPRIPQ6WCQ1 1025 aa23.9■■□□□ 1.42
MSH6-203ENST00000420813 SMARCC1Q92922 1105 aaPredicted RBP23.89■■□□□ 1.41
MSH6-203ENST00000420813 PANK3Q9H999 370 aa23.89■■□□□ 1.41
MSH6-203ENST00000420813 C4BP0C0L5 1744 aa23.87■■□□□ 1.41
MSH6-203ENST00000420813 EIF4A2Q14240 407 aaKnown RBP23.87■■□□□ 1.41
MSH6-203ENST00000420813 TNNT2P45379 298 aaPredicted RBP23.86■■□□□ 1.41
MSH6-203ENST00000420813 UBR3Q6ZT12 1888 aa23.85■■□□□ 1.41
MSH6-203ENST00000420813 COL23A1Q86Y22 540 aaPredicted RBP23.85■■□□□ 1.41
MSH6-203ENST00000420813 IFNL2Q8IZJ0 200 aa23.84■■□□□ 1.41
MSH6-203ENST00000420813 FLAD1Q8NFF5 587 aa23.84■■□□□ 1.41
MSH6-203ENST00000420813 PIGBQ92521 554 aa23.84■■□□□ 1.41
MSH6-203ENST00000420813 IGSF1Q8N6C5 1336 aa23.84■■□□□ 1.41
MSH6-203ENST00000420813 UTRNP46939 3433 aa23.83■■□□□ 1.41
MSH6-203ENST00000420813 MSH5O43196 834 aa23.82■■□□□ 1.4
MSH6-203ENST00000420813 PHKG2P15735 406 aa23.82■■□□□ 1.4
MSH6-203ENST00000420813 TMOD3Q9NYL9 352 aa23.8■■□□□ 1.4
MSH6-203ENST00000420813 KLHL34Q8N239 644 aa23.79■■□□□ 1.4
MSH6-203ENST00000420813 MORC1Q86VD1 984 aa23.78■■□□□ 1.4
MSH6-203ENST00000420813 ZNF831Q5JPB2 1677 aa23.77■■□□□ 1.4
MSH6-203ENST00000420813 LOC102724428A0A0B4J2F2 783 aa23.77■■□□□ 1.4
MSH6-203ENST00000420813 SIK1P57059 783 aa23.77■■□□□ 1.4
MSH6-203ENST00000420813 AK7Q96M32 723 aa23.77■■□□□ 1.4
MSH6-203ENST00000420813 GPR162Q16538 588 aa23.76■■□□□ 1.39
MSH6-203ENST00000420813 KNSTRNQ9Y448 316 aa23.76■■□□□ 1.39
MSH6-203ENST00000420813 HSP90AB1P08238 724 aaKnown RBP23.74■■□□□ 1.39
MSH6-203ENST00000420813 MSL1Q68DK7 614 aa23.74■■□□□ 1.39
MSH6-203ENST00000420813 ASAP1Q9ULH1 1129 aa23.74■■□□□ 1.39
MSH6-203ENST00000420813 PLEKHO1Q53GL0 409 aaPredicted RBP23.73■■□□□ 1.39
MSH6-203ENST00000420813 NLGN2Q8NFZ4 835 aa23.73■■□□□ 1.39
MSH6-203ENST00000420813 ERVV-2B6SEH9 535 aa23.72■■□□□ 1.39
MSH6-203ENST00000420813 SSFA2P28290 1259 aa23.72■■□□□ 1.39
MSH6-203ENST00000420813 AMOTQ4VCS5 1084 aa23.72■■□□□ 1.39
MSH6-203ENST00000420813 ZNF784Q8NCA9 323 aaPredicted RBP23.72■■□□□ 1.39
MSH6-203ENST00000420813 KIF7Q2M1P5 1343 aa23.71■■□□□ 1.39
MSH6-203ENST00000420813 LINC00116Q8NCU8 138 aa23.71■■□□□ 1.39
MSH6-203ENST00000420813 DCAF5Q96JK2 942 aa23.71■■□□□ 1.39
MSH6-203ENST00000420813 ATG3Q9NT62 314 aa23.71■■□□□ 1.39
MSH6-203ENST00000420813 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.7■■□□□ 1.38
MSH6-203ENST00000420813 AMER1Q5JTC6 1135 aaPredicted RBP23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms