RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 SPG7Q9UQ90 795 aa31.01■■■□□ 2.55
SMARCB1-205ENST00000417137 NUDCQ9Y266 331 aa31.01■■■□□ 2.55
SMARCB1-205ENST00000417137 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31■■■□□ 2.55
SMARCB1-205ENST00000417137 BCL9O00512 1426 aa30.98■■■□□ 2.55
SMARCB1-205ENST00000417137 SRCAPQ6ZRS2 3230 aa30.98■■■□□ 2.55
SMARCB1-205ENST00000417137 PLEKHG2Q9H7P9 1386 aa30.97■■■□□ 2.55
SMARCB1-205ENST00000417137 U2SURPO15042 1029 aaKnown RBP30.97■■■□□ 2.55
SMARCB1-205ENST00000417137 TRIM37O94972 964 aa30.97■■■□□ 2.55
SMARCB1-205ENST00000417137 PCDH11XQ9BZA7 1347 aa30.97■■■□□ 2.55
SMARCB1-205ENST00000417137 PCDH11YQ9BZA8 1340 aa30.97■■■□□ 2.55
SMARCB1-205ENST00000417137 EP400Q96L91 3159 aa30.96■■■□□ 2.55
SMARCB1-205ENST00000417137 MYBBP1AQ9BQG0 1328 aaKnown RBP30.96■■■□□ 2.55
SMARCB1-205ENST00000417137 AEBP1Q8IUX7 1158 aa30.95■■■□□ 2.55
SMARCB1-205ENST00000417137 PRKRIP1Q9H875 184 aaPredicted RBP30.95■■■□□ 2.55
SMARCB1-205ENST00000417137 PLEKHO1Q53GL0 409 aaPredicted RBP30.94■■■□□ 2.54
SMARCB1-205ENST00000417137 COL3A1P02461 1466 aaPredicted RBP30.94■■■□□ 2.54
SMARCB1-205ENST00000417137 KDRP35968 1356 aa30.93■■■□□ 2.54
SMARCB1-205ENST00000417137 AMOTQ4VCS5 1084 aa30.93■■■□□ 2.54
SMARCB1-205ENST00000417137 HMOX1P09601 288 aa30.91■■■□□ 2.54
SMARCB1-205ENST00000417137 BAG6P46379 1132 aa30.91■■■□□ 2.54
SMARCB1-205ENST00000417137 BCL11BQ9C0K0 894 aaPredicted RBP30.9■■■□□ 2.54
SMARCB1-205ENST00000417137 RGPD1P0DJD0 1748 aa30.88■■■□□ 2.53
SMARCB1-205ENST00000417137 APBA3O96018 575 aa30.88■■■□□ 2.53
SMARCB1-205ENST00000417137 IFNL2Q8IZJ0 200 aa30.88■■■□□ 2.53
SMARCB1-205ENST00000417137 CYP27B1O15528 508 aa30.87■■■□□ 2.53
SMARCB1-205ENST00000417137 U2AF1L5P0DN76 240 aaPredicted RBP30.87■■■□□ 2.53
SMARCB1-205ENST00000417137 U2AF1Q01081 240 aaKnown RBP eCLIP30.87■■■□□ 2.53
SMARCB1-205ENST00000417137 ACSBG1Q96GR2 724 aa30.86■■■□□ 2.53
SMARCB1-205ENST00000417137 ANP32CO43423 234 aa30.85■■■□□ 2.53
SMARCB1-205ENST00000417137 PHKG2P15735 406 aa30.83■■■□□ 2.53
SMARCB1-205ENST00000417137 NKX1-1Q15270 411 aaPredicted RBP30.83■■■□□ 2.53
SMARCB1-205ENST00000417137 DEFB132Q7Z7B7 95 aa30.83■■■□□ 2.53
SMARCB1-205ENST00000417137 KCNQ2O43526 872 aa30.82■■■□□ 2.52
SMARCB1-205ENST00000417137 HSP90AB1P08238 724 aaKnown RBP30.82■■■□□ 2.52
SMARCB1-205ENST00000417137 ZNF530Q6P9A1 599 aaPredicted RBP30.82■■■□□ 2.52
SMARCB1-205ENST00000417137 FCHSD2O94868 740 aa30.81■■■□□ 2.52
SMARCB1-205ENST00000417137 C1orf141Q5JVX7 400 aa30.81■■■□□ 2.52
SMARCB1-205ENST00000417137 PKD1L3Q7Z443 1732 aa30.81■■■□□ 2.52
SMARCB1-205ENST00000417137 PRIM1P49642 420 aaKnown RBP30.8■■■□□ 2.52
SMARCB1-205ENST00000417137 SYTL4Q96C24 671 aaPredicted RBP30.8■■■□□ 2.52
SMARCB1-205ENST00000417137 EN1Q05925 392 aaPredicted RBP30.79■■■□□ 2.52
SMARCB1-205ENST00000417137 PLSCR1O15162 318 aa30.77■■■□□ 2.52
SMARCB1-205ENST00000417137 PTF1AQ7RTS3 328 aa30.77■■■□□ 2.52
SMARCB1-205ENST00000417137 SHANK3Q9BYB0 1731 aa30.77■■■□□ 2.52
SMARCB1-205ENST00000417137 RSPH6AQ9H0K4 717 aa30.77■■■□□ 2.52
SMARCB1-205ENST00000417137 PNNQ9H307 717 aaKnown RBP30.77■■■□□ 2.52
SMARCB1-205ENST00000417137 PRKAR2BP31323 418 aa30.76■■■□□ 2.51
SMARCB1-205ENST00000417137 DCAF5Q96JK2 942 aa30.75■■■□□ 2.51
SMARCB1-205ENST00000417137 NEFMP07197 916 aa30.74■■■□□ 2.51
SMARCB1-205ENST00000417137 AKAP4Q5JQC9 854 aa30.74■■■□□ 2.51
SMARCB1-205ENST00000417137 CAMKK2Q96RR4 588 aa30.74■■■□□ 2.51
SMARCB1-205ENST00000417137 SBF2Q86WG5 1849 aa30.74■■■□□ 2.51
SMARCB1-205ENST00000417137 MTHFSDQ2M296 383 aaKnown RBP30.73■■■□□ 2.51
SMARCB1-205ENST00000417137 GAS2L2Q8NHY3 880 aa30.73■■■□□ 2.51
SMARCB1-205ENST00000417137 TNS1Q9HBL0 1735 aaKnown RBP30.72■■■□□ 2.51
SMARCB1-205ENST00000417137 EZH2Q15910 746 aaKnown RBP30.71■■■□□ 2.51
SMARCB1-205ENST00000417137 WDR43Q15061 677 aaKnown RBP eCLIP30.7■■■□□ 2.51
SMARCB1-205ENST00000417137 MPRIPQ6WCQ1 1025 aa30.7■■■□□ 2.51
SMARCB1-205ENST00000417137 NHSQ6T4R5 1651 aa30.7■■■□□ 2.5
SMARCB1-205ENST00000417137 ERVV-2B6SEH9 535 aa30.69■■■□□ 2.5
SMARCB1-205ENST00000417137 PHACTR3Q96KR7 559 aa30.68■■■□□ 2.5
SMARCB1-205ENST00000417137 TMOD3Q9NYL9 352 aa30.67■■■□□ 2.5
SMARCB1-205ENST00000417137 KAT6BQ8WYB5 2073 aa30.67■■■□□ 2.5
SMARCB1-205ENST00000417137 CABP4P57796 275 aa30.64■■■□□ 2.5
SMARCB1-205ENST00000417137 PIGBQ92521 554 aa30.64■■■□□ 2.5
SMARCB1-205ENST00000417137 DOT1LQ8TEK3 1739 aa30.64■■■□□ 2.5
SMARCB1-205ENST00000417137 GNAT3A8MTJ3 354 aa30.63■■■□□ 2.49
SMARCB1-205ENST00000417137 SMARCC1Q92922 1105 aaPredicted RBP30.62■■■□□ 2.49
SMARCB1-205ENST00000417137 MAPK8IP3Q9UPT6 1336 aa30.62■■■□□ 2.49
SMARCB1-205ENST00000417137 TXNRD1Q16881 649 aa30.61■■■□□ 2.49
SMARCB1-205ENST00000417137 PLEKHF1Q96S99 279 aa30.61■■■□□ 2.49
SMARCB1-205ENST00000417137 RNMTO43148 476 aaKnown RBP30.6■■■□□ 2.49
SMARCB1-205ENST00000417137 KDM6AO15550 1401 aaPredicted RBP30.59■■■□□ 2.49
SMARCB1-205ENST00000417137 MAP3K5Q99683 1374 aa30.59■■■□□ 2.49
SMARCB1-205ENST00000417137 NBPF14Q5TI25 921 aa30.58■■■□□ 2.49
SMARCB1-205ENST00000417137 PROM2Q8N271 834 aa30.58■■■□□ 2.49
SMARCB1-205ENST00000417137 LGR6Q9HBX8 967 aa30.58■■■□□ 2.49
SMARCB1-205ENST00000417137 BTAF1O14981 1849 aa30.57■■■□□ 2.48
SMARCB1-205ENST00000417137 SLC27A3Q5K4L6 730 aa30.57■■■□□ 2.48
SMARCB1-205ENST00000417137 RTF1Q92541 710 aaKnown RBP30.57■■■□□ 2.48
SMARCB1-205ENST00000417137 ADAMTS8Q9UP79 889 aa30.57■■■□□ 2.48
SMARCB1-205ENST00000417137 HMGB2P26583 209 aaKnown RBP30.56■■■□□ 2.48
SMARCB1-205ENST00000417137 NFATC2IPQ8NCF5 419 aa30.56■■■□□ 2.48
SMARCB1-205ENST00000417137 MRS2Q9HD23 443 aa30.56■■■□□ 2.48
SMARCB1-205ENST00000417137 HTATSF1O43719 755 aaKnown RBP30.55■■■□□ 2.48
SMARCB1-205ENST00000417137 RGPD3A6NKT7 1758 aaPredicted RBP30.55■■■□□ 2.48
SMARCB1-205ENST00000417137 RGPD4Q7Z3J3 1758 aa30.55■■■□□ 2.48
SMARCB1-205ENST00000417137 LRP5O75197 1615 aa30.55■■■□□ 2.48
SMARCB1-205ENST00000417137 TOGARAM1Q9Y4F4 1720 aa30.54■■■□□ 2.48
SMARCB1-205ENST00000417137 SLC52A2Q9HAB3 445 aa30.54■■■□□ 2.48
SMARCB1-205ENST00000417137 NFE2L2Q16236 605 aa30.53■■■□□ 2.48
SMARCB1-205ENST00000417137 CCDC184Q52MB2 194 aa30.53■■■□□ 2.48
SMARCB1-205ENST00000417137 RUNDC1Q96C34 613 aa30.53■■■□□ 2.48
SMARCB1-205ENST00000417137 PALLDQ8WX93 1383 aa30.53■■■□□ 2.48
SMARCB1-205ENST00000417137 IL17REQ8NFR9 667 aa30.52■■■□□ 2.48
SMARCB1-205ENST00000417137 TEFQ10587 303 aa30.51■■■□□ 2.47
SMARCB1-205ENST00000417137 ATG3Q9NT62 314 aa30.51■■■□□ 2.47
SMARCB1-205ENST00000417137 CCNL1Q9UK58 526 aaPredicted RBP30.51■■■□□ 2.47
SMARCB1-205ENST00000417137 ASAP1Q9ULH1 1129 aa30.51■■■□□ 2.47
SMARCB1-205ENST00000417137 ITGB4P16144 1822 aa30.5■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms