RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 AKT1S1Q96B36 256 aa20.71■□□□□ 0.91
RPS28-201ENST00000417088 SYT17Q9BSW7 474 aa20.71■□□□□ 0.91
RPS28-201ENST00000417088 FHDC1Q9C0D6 1143 aaPredicted RBP20.71■□□□□ 0.91
RPS28-201ENST00000417088 SYTL4Q96C24 671 aaPredicted RBP20.7■□□□□ 0.9
RPS28-201ENST00000417088 USHBP1Q8N6Y0 703 aa20.69■□□□□ 0.9
RPS28-201ENST00000417088 NSD2O96028 1365 aa20.69■□□□□ 0.9
RPS28-201ENST00000417088 ARXQ96QS3 562 aa20.68■□□□□ 0.9
RPS28-201ENST00000417088 CARD14Q9BXL6 1004 aa20.68■□□□□ 0.9
RPS28-201ENST00000417088 SHANK3Q9BYB0 1731 aa20.67■□□□□ 0.9
RPS28-201ENST00000417088 KCNQ4P56696 695 aa20.67■□□□□ 0.9
RPS28-201ENST00000417088 HSP90AB2PQ58FF8 381 aa20.67■□□□□ 0.9
RPS28-201ENST00000417088 RAPGEF4Q8WZA2 1011 aa20.66■□□□□ 0.9
RPS28-201ENST00000417088 CGNL1Q0VF96 1302 aa20.66■□□□□ 0.9
RPS28-201ENST00000417088 INSRP06213 1382 aa20.66■□□□□ 0.9
RPS28-201ENST00000417088 SMG6Q86US8 1419 aaKnown RBP20.66■□□□□ 0.9
RPS28-201ENST00000417088 DOT1LQ8TEK3 1739 aa20.66■□□□□ 0.9
RPS28-201ENST00000417088 PNPLA7Q6ZV29 1317 aa20.64■□□□□ 0.89
RPS28-201ENST00000417088 SLC16A10Q8TF71 515 aa20.64■□□□□ 0.89
RPS28-201ENST00000417088 TIMELESSQ9UNS1 1208 aa20.64■□□□□ 0.89
RPS28-201ENST00000417088 FLT4P35916 1363 aa20.63■□□□□ 0.89
RPS28-201ENST00000417088 KIF24Q5T7B8 1368 aa20.63■□□□□ 0.89
RPS28-201ENST00000417088 TATP17735 454 aaPredicted RBP20.63■□□□□ 0.89
RPS28-201ENST00000417088 TFCP2L1Q9NZI6 479 aa20.63■□□□□ 0.89
RPS28-201ENST00000417088 KIF20BQ96Q89 1820 aa20.62■□□□□ 0.89
RPS28-201ENST00000417088 NSD3Q9BZ95 1437 aa20.61■□□□□ 0.89
RPS28-201ENST00000417088 MAP3K5Q99683 1374 aa20.61■□□□□ 0.89
RPS28-201ENST00000417088 UTRNP46939 3433 aa20.61■□□□□ 0.89
RPS28-201ENST00000417088 CCNL1Q9UK58 526 aaPredicted RBP20.61■□□□□ 0.89
RPS28-201ENST00000417088 EMILIN1Q9Y6C2 1016 aa20.61■□□□□ 0.89
RPS28-201ENST00000417088 LY75O60449 1722 aa20.61■□□□□ 0.89
RPS28-201ENST00000417088 QSER1Q2KHR3 1735 aa20.61■□□□□ 0.89
RPS28-201ENST00000417088 PCDH11XQ9BZA7 1347 aa20.58■□□□□ 0.89
RPS28-201ENST00000417088 PCDH11YQ9BZA8 1340 aa20.58■□□□□ 0.89
RPS28-201ENST00000417088 CYP27B1O15528 508 aa20.57■□□□□ 0.88
RPS28-201ENST00000417088 POLD1P28340 1107 aa20.57■□□□□ 0.88
RPS28-201ENST00000417088 TUBGCP6Q96RT7 1819 aa20.57■□□□□ 0.88
RPS28-201ENST00000417088 COL24A1Q17RW2 1714 aa20.56■□□□□ 0.88
RPS28-201ENST00000417088 CLSPNQ9HAW4 1339 aa20.55■□□□□ 0.88
RPS28-201ENST00000417088 PPM1GO15355 546 aaPredicted RBP20.55■□□□□ 0.88
RPS28-201ENST00000417088 MPRIPQ6WCQ1 1025 aa20.54■□□□□ 0.88
RPS28-201ENST00000417088 COL23A1Q86Y22 540 aaPredicted RBP20.54■□□□□ 0.88
RPS28-201ENST00000417088 PCGF6Q9BYE7 350 aa20.54■□□□□ 0.88
RPS28-201ENST00000417088 WASHC2AQ641Q2 1341 aa20.53■□□□□ 0.88
RPS28-201ENST00000417088 NCAPD2Q15021 1401 aa20.53■□□□□ 0.88
RPS28-201ENST00000417088 KLHL34Q8N239 644 aa20.53■□□□□ 0.88
RPS28-201ENST00000417088 ZNF784Q8NCA9 323 aaPredicted RBP20.53■□□□□ 0.88
RPS28-201ENST00000417088 PALLDQ8WX93 1383 aa20.52■□□□□ 0.88
RPS28-201ENST00000417088 MSH5O43196 834 aa20.51■□□□□ 0.87
RPS28-201ENST00000417088 EYA1Q99502 592 aa20.51■□□□□ 0.87
RPS28-201ENST00000417088 POLKQ9UBT6 870 aa20.51■□□□□ 0.87
RPS28-201ENST00000417088 NKX1-1Q15270 411 aaPredicted RBP20.5■□□□□ 0.87
RPS28-201ENST00000417088 GPR162Q16538 588 aa20.5■□□□□ 0.87
RPS28-201ENST00000417088 ANKRD26Q9UPS8 1709 aa20.5■□□□□ 0.87
RPS28-201ENST00000417088 NLGN2Q8NFZ4 835 aa20.49■□□□□ 0.87
RPS28-201ENST00000417088 PIGBQ92521 554 aa20.49■□□□□ 0.87
RPS28-201ENST00000417088 POLR3GLQ9BT43 218 aa20.49■□□□□ 0.87
RPS28-201ENST00000417088 SPG7Q9UQ90 795 aa20.49■□□□□ 0.87
RPS28-201ENST00000417088 PKD1L3Q7Z443 1732 aa20.49■□□□□ 0.87
RPS28-201ENST00000417088 TOGARAM1Q9Y4F4 1720 aa20.48■□□□□ 0.87
RPS28-201ENST00000417088 SMARCC1Q92922 1105 aaPredicted RBP20.48■□□□□ 0.87
RPS28-201ENST00000417088 MAP2P11137 1827 aaKnown RBP20.48■□□□□ 0.87
RPS28-201ENST00000417088 CHD4Q14839 1912 aa20.47■□□□□ 0.87
RPS28-201ENST00000417088 HMGB2P26583 209 aaKnown RBP20.47■□□□□ 0.87
RPS28-201ENST00000417088 MSL1Q68DK7 614 aa20.47■□□□□ 0.87
RPS28-201ENST00000417088 C5P01031 1676 aa20.47■□□□□ 0.87
RPS28-201ENST00000417088 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.46■□□□□ 0.87
RPS28-201ENST00000417088 ITGB4P16144 1822 aa20.46■□□□□ 0.87
RPS28-201ENST00000417088 TNNT2P45379 298 aaPredicted RBP20.45■□□□□ 0.86
RPS28-201ENST00000417088 PELP1Q8IZL8 1130 aaKnown RBP20.45■□□□□ 0.86
RPS28-201ENST00000417088 FLAD1Q8NFF5 587 aa20.45■□□□□ 0.86
RPS28-201ENST00000417088 HSPA5P11021 654 aaKnown RBP20.44■□□□□ 0.86
RPS28-201ENST00000417088 EIF4G2P78344 907 aaKnown RBP eCLIP20.44■□□□□ 0.86
RPS28-201ENST00000417088 EIF4A2Q14240 407 aaKnown RBP20.44■□□□□ 0.86
RPS28-201ENST00000417088 TAF1LQ8IZX4 1826 aa20.43■□□□□ 0.86
RPS28-201ENST00000417088 AMIGO3Q86WK7 504 aa20.43■□□□□ 0.86
RPS28-201ENST00000417088 GOLGB1Q14789 3259 aaKnown RBP20.43■□□□□ 0.86
RPS28-201ENST00000417088 PHKG2P15735 406 aa20.42■□□□□ 0.86
RPS28-201ENST00000417088 IFNL2Q8IZJ0 200 aa20.42■□□□□ 0.86
RPS28-201ENST00000417088 AK7Q96M32 723 aa20.42■□□□□ 0.86
RPS28-201ENST00000417088 PANK3Q9H999 370 aa20.41■□□□□ 0.86
RPS28-201ENST00000417088 TMOD3Q9NYL9 352 aa20.41■□□□□ 0.86
RPS28-201ENST00000417088 C4BP0C0L5 1744 aa20.41■□□□□ 0.86
RPS28-201ENST00000417088 LOC102724428A0A0B4J2F2 783 aa20.4■□□□□ 0.86
RPS28-201ENST00000417088 SIK1P57059 783 aa20.4■□□□□ 0.86
RPS28-201ENST00000417088 SMIM5Q71RC9 77 aa20.4■□□□□ 0.86
RPS28-201ENST00000417088 YBX3P16989 372 aaKnown RBP eCLIP20.39■□□□□ 0.851e-18■□□□□ 10.5
RPS28-201ENST00000417088 ASAP1Q9ULH1 1129 aa20.39■□□□□ 0.85
RPS28-201ENST00000417088 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.38■□□□□ 0.85
RPS28-201ENST00000417088 PHF14O94880 888 aa20.38■□□□□ 0.85
RPS28-201ENST00000417088 LINC00116Q8NCU8 138 aa20.38■□□□□ 0.85
RPS28-201ENST00000417088 IGSF1Q8N6C5 1336 aa20.37■□□□□ 0.85
RPS28-201ENST00000417088 CD2APQ9Y5K6 639 aa20.37■□□□□ 0.85
RPS28-201ENST00000417088 PLEKHG2Q9H7P9 1386 aa20.36■□□□□ 0.85
RPS28-201ENST00000417088 GRIN3BO60391 1043 aa20.36■□□□□ 0.85
RPS28-201ENST00000417088 ITPK1Q13572 414 aa20.36■□□□□ 0.85
RPS28-201ENST00000417088 ATG3Q9NT62 314 aa20.36■□□□□ 0.85
RPS28-201ENST00000417088 UBR3Q6ZT12 1888 aa20.35■□□□□ 0.85
RPS28-201ENST00000417088 SSFA2P28290 1259 aa20.35■□□□□ 0.85
RPS28-201ENST00000417088 ATP6V1AP38606 617 aa20.34■□□□□ 0.85
RPS28-201ENST00000417088 CCER1Q8TC90 406 aaPredicted RBP20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms