RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 TONSLQ96HA7 1378 aa18.24■□□□□ 0.51
LINC00339-202ENST00000416769 LY75O60449 1722 aa18.23■□□□□ 0.51
LINC00339-202ENST00000416769 QSER1Q2KHR3 1735 aa18.23■□□□□ 0.51
LINC00339-202ENST00000416769 RRS1Q15050 365 aaKnown RBP18.23■□□□□ 0.51
LINC00339-202ENST00000416769 COL24A1Q17RW2 1714 aa18.23■□□□□ 0.51
LINC00339-202ENST00000416769 GOLGB1Q14789 3259 aaKnown RBP18.22■□□□□ 0.51
LINC00339-202ENST00000416769 MAP3K5Q99683 1374 aa18.22■□□□□ 0.51
LINC00339-202ENST00000416769 NLGN2Q8NFZ4 835 aa18.22■□□□□ 0.51
LINC00339-202ENST00000416769 ANKRD36BQ8N2N9 1353 aa18.21■□□□□ 0.51
LINC00339-202ENST00000416769 AMPHP49418 695 aa18.21■□□□□ 0.51
LINC00339-202ENST00000416769 COG3Q96JB2 828 aa18.21■□□□□ 0.51
LINC00339-202ENST00000416769 NBPF6Q5VWK0 638 aa18.2■□□□□ 0.5
LINC00339-202ENST00000416769 NBPF4Q96M43 638 aa18.2■□□□□ 0.5
LINC00339-202ENST00000416769 GGNBP2Q9H3C7 697 aa18.2■□□□□ 0.5
LINC00339-202ENST00000416769 PELP1Q8IZL8 1130 aaKnown RBP18.19■□□□□ 0.5
LINC00339-202ENST00000416769 TFCP2L1Q9NZI6 479 aa18.19■□□□□ 0.5
LINC00339-202ENST00000416769 GPR162Q16538 588 aa18.18■□□□□ 0.5
LINC00339-202ENST00000416769 SLC27A3Q5K4L6 730 aa18.18■□□□□ 0.5
LINC00339-202ENST00000416769 ZCRB1Q8TBF4 217 aaKnown RBP18.18■□□□□ 0.5
LINC00339-202ENST00000416769 MSL1Q68DK7 614 aa18.17■□□□□ 0.5
LINC00339-202ENST00000416769 PUS7Q96PZ0 661 aaKnown RBP18.17■□□□□ 0.5
LINC00339-202ENST00000416769 FYB1O15117 783 aa18.16■□□□□ 0.5
LINC00339-202ENST00000416769 COL23A1Q86Y22 540 aaPredicted RBP18.16■□□□□ 0.5
LINC00339-202ENST00000416769 CCNL1Q9UK58 526 aaPredicted RBP18.16■□□□□ 0.5
LINC00339-202ENST00000416769 TOGARAM1Q9Y4F4 1720 aa18.15■□□□□ 0.5
LINC00339-202ENST00000416769 YBX3P16989 372 aaKnown RBP eCLIP18.14■□□□□ 0.491e-7■■■■□ 23.4
LINC00339-202ENST00000416769 HSP90AB2PQ58FF8 381 aa18.14■□□□□ 0.49
LINC00339-202ENST00000416769 SMIM5Q71RC9 77 aa18.14■□□□□ 0.49
LINC00339-202ENST00000416769 SENP3-EIF4A1A0A087X0R7 540 aa18.13■□□□□ 0.49
LINC00339-202ENST00000416769 POLD1P28340 1107 aa18.13■□□□□ 0.49
LINC00339-202ENST00000416769 AMIGO3Q86WK7 504 aa18.13■□□□□ 0.49
LINC00339-202ENST00000416769 SLC16A10Q8TF71 515 aa18.13■□□□□ 0.49
LINC00339-202ENST00000416769 RTL1A6NKG5 1358 aa18.13■□□□□ 0.49
LINC00339-202ENST00000416769 KIF20BQ96Q89 1820 aa18.12■□□□□ 0.49
LINC00339-202ENST00000416769 MSH5O43196 834 aa18.12■□□□□ 0.49
LINC00339-202ENST00000416769 C1QTNF8P60827 252 aa18.12■□□□□ 0.49
LINC00339-202ENST00000416769 C5P01031 1676 aa18.12■□□□□ 0.49
LINC00339-202ENST00000416769 TAF1LQ8IZX4 1826 aa18.11■□□□□ 0.49
LINC00339-202ENST00000416769 USP47Q96K76 1375 aa18.1■□□□□ 0.49
LINC00339-202ENST00000416769 CYP27B1O15528 508 aa18.09■□□□□ 0.49
LINC00339-202ENST00000416769 ITGB4P16144 1822 aa18.09■□□□□ 0.49
LINC00339-202ENST00000416769 RAPGEF4Q8WZA2 1011 aa18.08■□□□□ 0.48
LINC00339-202ENST00000416769 CARD14Q9BXL6 1004 aa18.08■□□□□ 0.48
LINC00339-202ENST00000416769 EMILIN1Q9Y6C2 1016 aa18.08■□□□□ 0.48
LINC00339-202ENST00000416769 PALLDQ8WX93 1383 aa18.07■□□□□ 0.48
LINC00339-202ENST00000416769 MPRIPQ6WCQ1 1025 aa18.07■□□□□ 0.48
LINC00339-202ENST00000416769 WWC3Q9ULE0 1092 aa18.07■□□□□ 0.48
LINC00339-202ENST00000416769 INSRP06213 1382 aa18.06■□□□□ 0.48
LINC00339-202ENST00000416769 TATP17735 454 aaPredicted RBP18.06■□□□□ 0.48
LINC00339-202ENST00000416769 SMG6Q86US8 1419 aaKnown RBP18.06■□□□□ 0.48
LINC00339-202ENST00000416769 TMF1P82094 1093 aa18.05■□□□□ 0.48
LINC00339-202ENST00000416769 PKD1L3Q7Z443 1732 aa18.05■□□□□ 0.48
LINC00339-202ENST00000416769 FLT4P35916 1363 aa18.04■□□□□ 0.48
LINC00339-202ENST00000416769 PCDH11XQ9BZA7 1347 aa18.04■□□□□ 0.48
LINC00339-202ENST00000416769 PCDH11YQ9BZA8 1340 aa18.04■□□□□ 0.48
LINC00339-202ENST00000416769 C4BP0C0L5 1744 aa18.04■□□□□ 0.48
LINC00339-202ENST00000416769 NSD3Q9BZ95 1437 aa18.04■□□□□ 0.48
LINC00339-202ENST00000416769 UBR3Q6ZT12 1888 aa18.03■□□□□ 0.48
LINC00339-202ENST00000416769 CGNL1Q0VF96 1302 aa18.02■□□□□ 0.48
LINC00339-202ENST00000416769 CLSPNQ9HAW4 1339 aa18.02■□□□□ 0.48
LINC00339-202ENST00000416769 GIGYF1O75420 1035 aaPredicted RBP18.02■□□□□ 0.48
LINC00339-202ENST00000416769 PHF14O94880 888 aa18.02■□□□□ 0.48
LINC00339-202ENST00000416769 CCER1Q8TC90 406 aaPredicted RBP18.02■□□□□ 0.48
LINC00339-202ENST00000416769 MAP2P11137 1827 aaKnown RBP18.02■□□□□ 0.47
LINC00339-202ENST00000416769 PPM1GO15355 546 aaPredicted RBP18.01■□□□□ 0.47
LINC00339-202ENST00000416769 PIGBQ92521 554 aa18.01■□□□□ 0.47
LINC00339-202ENST00000416769 NCAPD2Q15021 1401 aa18■□□□□ 0.47
LINC00339-202ENST00000416769 ATP10DQ9P241 1426 aa18■□□□□ 0.47
LINC00339-202ENST00000416769 ANKRD26Q9UPS8 1709 aa18■□□□□ 0.47
LINC00339-202ENST00000416769 LINC00116Q8NCU8 138 aa17.99■□□□□ 0.47
LINC00339-202ENST00000416769 CEP350Q5VT06 3117 aa17.98■□□□□ 0.47
LINC00339-202ENST00000416769 ITPK1Q13572 414 aa17.97■□□□□ 0.47
LINC00339-202ENST00000416769 EYA1Q99502 592 aa17.97■□□□□ 0.47
LINC00339-202ENST00000416769 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.96■□□□□ 0.47
LINC00339-202ENST00000416769 ZNF526Q8TF50 670 aaPredicted RBP17.96■□□□□ 0.47
LINC00339-202ENST00000416769 AK7Q96M32 723 aa17.96■□□□□ 0.47
LINC00339-202ENST00000416769 ASAP1Q9ULH1 1129 aa17.96■□□□□ 0.47
LINC00339-202ENST00000416769 KIF24Q5T7B8 1368 aa17.95■□□□□ 0.46
LINC00339-202ENST00000416769 GRIN3BO60391 1043 aa17.95■□□□□ 0.46
LINC00339-202ENST00000416769 CD2APQ9Y5K6 639 aa17.95■□□□□ 0.46
LINC00339-202ENST00000416769 NKX1-1Q15270 411 aaPredicted RBP17.94■□□□□ 0.46
LINC00339-202ENST00000416769 IGSF1Q8N6C5 1336 aa17.94■□□□□ 0.46
LINC00339-202ENST00000416769 ADCY9O60503 1353 aa17.93■□□□□ 0.46
LINC00339-202ENST00000416769 LOC102724428A0A0B4J2F2 783 aa17.93■□□□□ 0.46
LINC00339-202ENST00000416769 SLC24A1O60721 1099 aa17.93■□□□□ 0.46
LINC00339-202ENST00000416769 TNNT2P45379 298 aaPredicted RBP17.93■□□□□ 0.46
LINC00339-202ENST00000416769 SIK1P57059 783 aa17.93■□□□□ 0.46
LINC00339-202ENST00000416769 SMARCC1Q92922 1105 aaPredicted RBP17.92■□□□□ 0.46
LINC00339-202ENST00000416769 POLKQ9UBT6 870 aa17.92■□□□□ 0.46
LINC00339-202ENST00000416769 WASHC2AQ641Q2 1341 aa17.92■□□□□ 0.46
LINC00339-202ENST00000416769 FLAD1Q8NFF5 587 aa17.91■□□□□ 0.46
LINC00339-202ENST00000416769 POLR3GLQ9BT43 218 aa17.91■□□□□ 0.46
LINC00339-202ENST00000416769 KIAA1551Q9HCM1 1747 aa17.9■□□□□ 0.46
LINC00339-202ENST00000416769 GNPATO15228 680 aa17.9■□□□□ 0.46
LINC00339-202ENST00000416769 PHKG2P15735 406 aa17.9■□□□□ 0.46
LINC00339-202ENST00000416769 EIF4A2Q14240 407 aaKnown RBP17.9■□□□□ 0.46
LINC00339-202ENST00000416769 SLC4A9Q96Q91 983 aa17.9■□□□□ 0.46
LINC00339-202ENST00000416769 ATG3Q9NT62 314 aa17.9■□□□□ 0.46
LINC00339-202ENST00000416769 TMOD3Q9NYL9 352 aa17.9■□□□□ 0.46
LINC00339-202ENST00000416769 SPG7Q9UQ90 795 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms