RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 BCL9LQ86UU0 1499 aa12.71□□□□□ -0.38
RIF1-202ENST00000414861 DCTN1Q14203 1278 aa12.7□□□□□ -0.38
RIF1-202ENST00000414861 RAPGEF4Q8WZA2 1011 aa12.7□□□□□ -0.38
RIF1-202ENST00000414861 OVOS2A0A0G2JMS6 1433 aa12.7□□□□□ -0.38
RIF1-202ENST00000414861 GOLGA2Q08379 1002 aa12.7□□□□□ -0.38
RIF1-202ENST00000414861 GAS2L2Q8NHY3 880 aa12.7□□□□□ -0.38
RIF1-202ENST00000414861 PDE3BQ13370 1112 aa12.69□□□□□ -0.38
RIF1-202ENST00000414861 NGLY1Q96IV0 654 aa12.69□□□□□ -0.38
RIF1-202ENST00000414861 LRRC37A3O60309 1634 aa12.69□□□□□ -0.38
RIF1-202ENST00000414861 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.69□□□□□ -0.38
RIF1-202ENST00000414861 TATP17735 454 aaPredicted RBP12.68□□□□□ -0.38
RIF1-202ENST00000414861 MCM10Q7L590 875 aa12.68□□□□□ -0.38
RIF1-202ENST00000414861 MAP3K5Q99683 1374 aa12.68□□□□□ -0.38
RIF1-202ENST00000414861 SLFN5Q08AF3 891 aa12.68□□□□□ -0.38
RIF1-202ENST00000414861 ZNF530Q6P9A1 599 aaPredicted RBP12.68□□□□□ -0.38
RIF1-202ENST00000414861 DISP2A7MBM2 1401 aa12.68□□□□□ -0.38
RIF1-202ENST00000414861 PLEKHO1Q53GL0 409 aaPredicted RBP12.67□□□□□ -0.38
RIF1-202ENST00000414861 MEX3CQ5U5Q3 659 aaKnown RBP12.67□□□□□ -0.38
RIF1-202ENST00000414861 DUSP27Q5VZP5 1158 aa12.67□□□□□ -0.38
RIF1-202ENST00000414861 WDR63Q8IWG1 891 aa12.67□□□□□ -0.38
RIF1-202ENST00000414861 FNBP4Q8N3X1 1017 aaPredicted RBP12.67□□□□□ -0.38
RIF1-202ENST00000414861 IL2RBP14784 551 aa12.67□□□□□ -0.38
RIF1-202ENST00000414861 LMOD3Q0VAK6 560 aa12.67□□□□□ -0.38
RIF1-202ENST00000414861 AMOTQ4VCS5 1084 aa12.67□□□□□ -0.38
RIF1-202ENST00000414861 UNC5CLQ8IV45 518 aa12.67□□□□□ -0.38
RIF1-202ENST00000414861 FBXO41Q8TF61 875 aa12.67□□□□□ -0.38
RIF1-202ENST00000414861 SPATA31A1Q5TZJ5 1347 aa12.67□□□□□ -0.38
RIF1-202ENST00000414861 PLEKHG2Q9H7P9 1386 aa12.67□□□□□ -0.38
RIF1-202ENST00000414861 TRMT2AQ8IZ69 625 aaKnown RBP12.66□□□□□ -0.38
RIF1-202ENST00000414861 GNAT3A8MTJ3 354 aa12.66□□□□□ -0.38
RIF1-202ENST00000414861 E9PSI1 815 aa12.66□□□□□ -0.38
RIF1-202ENST00000414861 SPATA31A5Q5VU36 1347 aa12.66□□□□□ -0.38
RIF1-202ENST00000414861 SPATA31A7Q8IWB4 1347 aa12.66□□□□□ -0.38
RIF1-202ENST00000414861 ADAMTS7Q9UKP4 1686 aa12.66□□□□□ -0.38
RIF1-202ENST00000414861 SCN11AQ9UI33 1791 aa12.65□□□□□ -0.38
RIF1-202ENST00000414861 TSR2Q969E8 191 aaKnown RBP12.65□□□□□ -0.38
RIF1-202ENST00000414861 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.65□□□□□ -0.382e-7■■■□□ 15.8
RIF1-202ENST00000414861 AFF2P51816 1311 aa12.65□□□□□ -0.38
RIF1-202ENST00000414861 CYP27B1O15528 508 aa12.64□□□□□ -0.39
RIF1-202ENST00000414861 AKAP4Q5JQC9 854 aa12.64□□□□□ -0.39
RIF1-202ENST00000414861 IL17REQ8NFR9 667 aa12.64□□□□□ -0.39
RIF1-202ENST00000414861 USP21Q9UK80 565 aa12.64□□□□□ -0.39
RIF1-202ENST00000414861 IL16Q14005 1332 aa12.64□□□□□ -0.39
RIF1-202ENST00000414861 RTF1Q92541 710 aaKnown RBP12.64□□□□□ -0.39
RIF1-202ENST00000414861 SPG7Q9UQ90 795 aa12.64□□□□□ -0.39
RIF1-202ENST00000414861 FANCIQ9NVI1 1328 aa12.64□□□□□ -0.39
RIF1-202ENST00000414861 KDM6AO15550 1401 aaPredicted RBP12.64□□□□□ -0.39
RIF1-202ENST00000414861 VPS72Q15906 364 aa12.63□□□□□ -0.39
RIF1-202ENST00000414861 C1orf141Q5JVX7 400 aa12.63□□□□□ -0.39
RIF1-202ENST00000414861 LGR6Q9HBX8 967 aa12.63□□□□□ -0.39
RIF1-202ENST00000414861 CCDC9Q9Y3X0 531 aaKnown RBP12.63□□□□□ -0.39
RIF1-202ENST00000414861 CEMIPQ8WUJ3 1361 aa12.63□□□□□ -0.39
RIF1-202ENST00000414861 HTATSF1O43719 755 aaKnown RBP12.63□□□□□ -0.39
RIF1-202ENST00000414861 PHKG2P15735 406 aa12.63□□□□□ -0.39
RIF1-202ENST00000414861 MPRIPQ6WCQ1 1025 aa12.63□□□□□ -0.39
RIF1-202ENST00000414861 SIPA1L3O60292 1781 aaPredicted RBP12.63□□□□□ -0.39
RIF1-202ENST00000414861 ZNF853P0CG23 659 aa12.62□□□□□ -0.39
RIF1-202ENST00000414861 ZCRB1Q8TBF4 217 aaKnown RBP12.62□□□□□ -0.39
RIF1-202ENST00000414861 LAS1LQ9Y4W2 734 aaKnown RBP12.62□□□□□ -0.39
RIF1-202ENST00000414861 GLI3P10071 1580 aa12.62□□□□□ -0.39
RIF1-202ENST00000414861 PCDH11XQ9BZA7 1347 aa12.62□□□□□ -0.39
RIF1-202ENST00000414861 PCDH11YQ9BZA8 1340 aa12.62□□□□□ -0.39
RIF1-202ENST00000414861 TNS2Q63HR2 1409 aa12.61□□□□□ -0.39
RIF1-202ENST00000414861 MYH16Q9H6N6 1097 aa12.61□□□□□ -0.39
RIF1-202ENST00000414861 IFT57Q9NWB7 429 aa12.61□□□□□ -0.39
RIF1-202ENST00000414861 THRAP3Q9Y2W1 955 aaKnown RBP12.61□□□□□ -0.39
RIF1-202ENST00000414861 TOGARAM1Q9Y4F4 1720 aa12.61□□□□□ -0.39
RIF1-202ENST00000414861 CALD1Q05682 793 aaKnown RBP12.61□□□□□ -0.39
RIF1-202ENST00000414861 IFNL2Q8IZJ0 200 aa12.61□□□□□ -0.39
RIF1-202ENST00000414861 MBIPQ9NS73 344 aa12.61□□□□□ -0.39
RIF1-202ENST00000414861 ATRNO75882 1429 aa12.61□□□□□ -0.39
RIF1-202ENST00000414861 RNMTO43148 476 aaKnown RBP12.6□□□□□ -0.39
RIF1-202ENST00000414861 CFAP44Q96MT7 982 aa12.6□□□□□ -0.39
RIF1-202ENST00000414861 BARGINQ6ZT62 677 aa12.6□□□□□ -0.39
RIF1-202ENST00000414861 MIS18AQ9NYP9 233 aa12.6□□□□□ -0.39
RIF1-202ENST00000414861 THSD7AQ9UPZ6 1657 aa12.6□□□□□ -0.39
RIF1-202ENST00000414861 GNAI1P63096 354 aa12.59□□□□□ -0.39
RIF1-202ENST00000414861 FAM98CQ17RN3 349 aaKnown RBP12.59□□□□□ -0.39
RIF1-202ENST00000414861 DDX54Q8TDD1 881 aaKnown RBP12.59□□□□□ -0.39
RIF1-202ENST00000414861 KDM3BQ7LBC6 1761 aa12.59□□□□□ -0.39
RIF1-202ENST00000414861 MRC1P22897 1456 aa12.59□□□□□ -0.39
RIF1-202ENST00000414861 CHL1O00533 1208 aa12.59□□□□□ -0.39
RIF1-202ENST00000414861 KAT6BQ8WYB5 2073 aa12.58□□□□□ -0.39
RIF1-202ENST00000414861 EXOSC9Q06265 439 aaKnown RBP12.58□□□□□ -0.4
RIF1-202ENST00000414861 DCAF5Q96JK2 942 aa12.57□□□□□ -0.4
RIF1-202ENST00000414861 CDCA7Q9BWT1 371 aaPredicted RBP12.57□□□□□ -0.4
RIF1-202ENST00000414861 KRT24Q2M2I5 525 aa12.57□□□□□ -0.4
RIF1-202ENST00000414861 GJD4Q96KN9 370 aaPredicted RBP12.57□□□□□ -0.4
RIF1-202ENST00000414861 TSPYL4Q9UJ04 414 aa12.57□□□□□ -0.4
RIF1-202ENST00000414861 RCAN3Q9UKA8 241 aa12.57□□□□□ -0.4
RIF1-202ENST00000414861 TRPC5Q9UL62 973 aaPredicted RBP12.57□□□□□ -0.4
RIF1-202ENST00000414861 TEFQ10587 303 aa12.56□□□□□ -0.4
RIF1-202ENST00000414861 SUPT16HQ9Y5B9 1047 aaKnown RBP12.56□□□□□ -0.4
RIF1-202ENST00000414861 ITGB4P16144 1822 aa12.56□□□□□ -0.4
RIF1-202ENST00000414861 DOT1LQ8TEK3 1739 aa12.56□□□□□ -0.4
RIF1-202ENST00000414861 EXOC5O00471 708 aa12.56□□□□□ -0.4
RIF1-202ENST00000414861 NKX1-1Q15270 411 aaPredicted RBP12.56□□□□□ -0.4
RIF1-202ENST00000414861 TAF7Q15545 349 aaPredicted RBP12.56□□□□□ -0.4
RIF1-202ENST00000414861 DDB1Q16531 1140 aa12.56□□□□□ -0.4
RIF1-202ENST00000414861 HSP90AB1P08238 724 aaKnown RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms