RNA–Protein interactions for RNA: ENST00000412847.5

PTPRN-203, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-203ENST00000412847 LTV1Q96GA3 475 aaPredicted RBP18.36■□□□□ 0.53
PTPRN-203ENST00000412847 CARD11Q9BXL7 1154 aa18.36■□□□□ 0.53
PTPRN-203ENST00000412847 SLC12A5Q9H2X9 1139 aa18.36■□□□□ 0.53
PTPRN-203ENST00000412847 TERF2IPQ9NYB0 399 aa18.36■□□□□ 0.53
PTPRN-203ENST00000412847 MEGF6O75095 1541 aa18.35■□□□□ 0.53
PTPRN-203ENST00000412847 SYTL4Q96C24 671 aaPredicted RBP18.35■□□□□ 0.53
PTPRN-203ENST00000412847 TFCP2L1Q9NZI6 479 aa18.35■□□□□ 0.53
PTPRN-203ENST00000412847 GIGYF1O75420 1035 aaPredicted RBP18.34■□□□□ 0.53
PTPRN-203ENST00000412847 TOGARAM1Q9Y4F4 1720 aa18.33■□□□□ 0.52
PTPRN-203ENST00000412847 KCNQ4P56696 695 aa18.33■□□□□ 0.52
PTPRN-203ENST00000412847 PRIM1P49642 420 aaKnown RBP18.32■□□□□ 0.52
PTPRN-203ENST00000412847 NLGN2Q8NFZ4 835 aa18.32■□□□□ 0.52
PTPRN-203ENST00000412847 UBR3Q6ZT12 1888 aa18.32■□□□□ 0.52
PTPRN-203ENST00000412847 MAP3K19Q56UN5 1328 aa18.3■□□□□ 0.52
PTPRN-203ENST00000412847 PKD1L3Q7Z443 1732 aa18.3■□□□□ 0.52
PTPRN-203ENST00000412847 HOXC9P31274 260 aa18.3■□□□□ 0.52
PTPRN-203ENST00000412847 PUS7Q96PZ0 661 aaKnown RBP18.3■□□□□ 0.52
PTPRN-203ENST00000412847 RTL1A6NKG5 1358 aa18.3■□□□□ 0.52
PTPRN-203ENST00000412847 C4BP0C0L5 1744 aa18.29■□□□□ 0.52
PTPRN-203ENST00000412847 COG3Q96JB2 828 aa18.29■□□□□ 0.52
PTPRN-203ENST00000412847 CCNL1Q9UK58 526 aaPredicted RBP18.29■□□□□ 0.52
PTPRN-203ENST00000412847 USP47Q96K76 1375 aa18.29■□□□□ 0.52
PTPRN-203ENST00000412847 ZCRB1Q8TBF4 217 aaKnown RBP18.28■□□□□ 0.52
PTPRN-203ENST00000412847 MSH5O43196 834 aa18.27■□□□□ 0.52
PTPRN-203ENST00000412847 AMPHP49418 695 aa18.27■□□□□ 0.52
PTPRN-203ENST00000412847 SMG6Q86US8 1419 aaKnown RBP18.26■□□□□ 0.51
PTPRN-203ENST00000412847 GRIN3BO60391 1043 aa18.25■□□□□ 0.51
PTPRN-203ENST00000412847 YBX3P16989 372 aaKnown RBP eCLIP18.25■□□□□ 0.51
PTPRN-203ENST00000412847 COL23A1Q86Y22 540 aaPredicted RBP18.25■□□□□ 0.51
PTPRN-203ENST00000412847 TONSLQ96HA7 1378 aa18.25■□□□□ 0.51
PTPRN-203ENST00000412847 ANKRD26Q9UPS8 1709 aa18.24■□□□□ 0.51
PTPRN-203ENST00000412847 MAP2P11137 1827 aaKnown RBP18.24■□□□□ 0.51
PTPRN-203ENST00000412847 FBLN1P23142 703 aa18.23■□□□□ 0.51
PTPRN-203ENST00000412847 ATP10DQ9P241 1426 aa18.23■□□□□ 0.51
PTPRN-203ENST00000412847 CGNL1Q0VF96 1302 aa18.23■□□□□ 0.51
PTPRN-203ENST00000412847 MSL1Q68DK7 614 aa18.22■□□□□ 0.51
PTPRN-203ENST00000412847 USHBP1Q8N6Y0 703 aa18.21■□□□□ 0.51
PTPRN-203ENST00000412847 NBPF6Q5VWK0 638 aa18.2■□□□□ 0.5
PTPRN-203ENST00000412847 RAPGEF4Q8WZA2 1011 aa18.2■□□□□ 0.5
PTPRN-203ENST00000412847 NBPF4Q96M43 638 aa18.2■□□□□ 0.5
PTPRN-203ENST00000412847 TESK2Q96S53 571 aa18.2■□□□□ 0.5
PTPRN-203ENST00000412847 PALLDQ8WX93 1383 aa18.19■□□□□ 0.5
PTPRN-203ENST00000412847 KIF13BQ9NQT8 1826 aa18.19■□□□□ 0.5
PTPRN-203ENST00000412847 RRS1Q15050 365 aaKnown RBP18.19■□□□□ 0.5
PTPRN-203ENST00000412847 PCDH11XQ9BZA7 1347 aa18.19■□□□□ 0.5
PTPRN-203ENST00000412847 PCDH11YQ9BZA8 1340 aa18.19■□□□□ 0.5
PTPRN-203ENST00000412847 TATP17735 454 aaPredicted RBP18.18■□□□□ 0.5
PTPRN-203ENST00000412847 HMGB2P26583 209 aaKnown RBP18.18■□□□□ 0.5
PTPRN-203ENST00000412847 GOLGB1Q14789 3259 aaKnown RBP18.17■□□□□ 0.5
PTPRN-203ENST00000412847 ST20-MTHFSA0A0A6YYL1 179 aa18.17■□□□□ 0.5
PTPRN-203ENST00000412847 FLAD1Q8NFF5 587 aa18.17■□□□□ 0.5
PTPRN-203ENST00000412847 CD2APQ9Y5K6 639 aa18.17■□□□□ 0.5
PTPRN-203ENST00000412847 ADCY9O60503 1353 aa18.17■□□□□ 0.5
PTPRN-203ENST00000412847 INSRP06213 1382 aa18.17■□□□□ 0.5
PTPRN-203ENST00000412847 KIAA1551Q9HCM1 1747 aa18.16■□□□□ 0.5
PTPRN-203ENST00000412847 SLC24A1O60721 1099 aa18.16■□□□□ 0.5
PTPRN-203ENST00000412847 IFFO2Q5TF58 517 aa18.16■□□□□ 0.5
PTPRN-203ENST00000412847 GGNBP2Q9H3C7 697 aa18.16■□□□□ 0.5
PTPRN-203ENST00000412847 N4BP2Q86UW6 1770 aaPredicted RBP18.16■□□□□ 0.5
PTPRN-203ENST00000412847 FLT4P35916 1363 aa18.16■□□□□ 0.5
PTPRN-203ENST00000412847 CICQ96RK0 1608 aaPredicted RBP18.16■□□□□ 0.5
PTPRN-203ENST00000412847 NSD3Q9BZ95 1437 aa18.15■□□□□ 0.5
PTPRN-203ENST00000412847 KIF24Q5T7B8 1368 aa18.15■□□□□ 0.5
PTPRN-203ENST00000412847 FYB1O15117 783 aa18.14■□□□□ 0.49
PTPRN-203ENST00000412847 MPRIPQ6WCQ1 1025 aa18.14■□□□□ 0.49
PTPRN-203ENST00000412847 AK7Q96M32 723 aa18.13■□□□□ 0.49
PTPRN-203ENST00000412847 GPBP1L1Q9HC44 474 aaPredicted RBP18.13■□□□□ 0.49
PTPRN-203ENST00000412847 BRCA1P38398 1863 aaKnown RBP18.13■□□□□ 0.49
PTPRN-203ENST00000412847 COL5A3P25940 1745 aaPredicted RBP18.12■□□□□ 0.49
PTPRN-203ENST00000412847 HSP90AB2PQ58FF8 381 aa18.11■□□□□ 0.49
PTPRN-203ENST00000412847 SMARCC1Q92922 1105 aaPredicted RBP18.11■□□□□ 0.49
PTPRN-203ENST00000412847 NCAPD2Q15021 1401 aa18.11■□□□□ 0.49
PTPRN-203ENST00000412847 ZNF831Q5JPB2 1677 aa18.11■□□□□ 0.49
PTPRN-203ENST00000412847 IGSF1Q8N6C5 1336 aa18.1■□□□□ 0.49
PTPRN-203ENST00000412847 CYP27B1O15528 508 aa18.1■□□□□ 0.49
PTPRN-203ENST00000412847 C4AP0C0L4 1744 aa18.09■□□□□ 0.49
PTPRN-203ENST00000412847 PHF14O94880 888 aa18.09■□□□□ 0.49
PTPRN-203ENST00000412847 TMF1P82094 1093 aa18.09■□□□□ 0.49
PTPRN-203ENST00000412847 ZNF526Q8TF50 670 aaPredicted RBP18.09■□□□□ 0.49
PTPRN-203ENST00000412847 ARFGEF1Q9Y6D6 1849 aa18.08■□□□□ 0.48
PTPRN-203ENST00000412847 AMIGO3Q86WK7 504 aa18.08■□□□□ 0.48
PTPRN-203ENST00000412847 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.07■□□□□ 0.48
PTPRN-203ENST00000412847 HSPA6P17066 643 aa18.07■□□□□ 0.48
PTPRN-203ENST00000412847 WWC3Q9ULE0 1092 aa18.06■□□□□ 0.48
PTPRN-203ENST00000412847 SSFA2P28290 1259 aa18.05■□□□□ 0.48
PTPRN-203ENST00000412847 PIGBQ92521 554 aa18.05■□□□□ 0.48
PTPRN-203ENST00000412847 CEP350Q5VT06 3117 aa18.05■□□□□ 0.48
PTPRN-203ENST00000412847 SMIM5Q71RC9 77 aa18.04■□□□□ 0.48
PTPRN-203ENST00000412847 LINC00116Q8NCU8 138 aa18.04■□□□□ 0.48
PTPRN-203ENST00000412847 VIRMAQ69YN4 1812 aaKnown RBP18.04■□□□□ 0.48
PTPRN-203ENST00000412847 LOC102724428A0A0B4J2F2 783 aa18.03■□□□□ 0.48
PTPRN-203ENST00000412847 SIK1P57059 783 aa18.03■□□□□ 0.48
PTPRN-203ENST00000412847 NKX1-1Q15270 411 aaPredicted RBP18.03■□□□□ 0.48
PTPRN-203ENST00000412847 SPG7Q9UQ90 795 aa18.03■□□□□ 0.48
PTPRN-203ENST00000412847 EMILIN1Q9Y6C2 1016 aa18.03■□□□□ 0.48
PTPRN-203ENST00000412847 WDR90Q96KV7 1748 aa18.03■□□□□ 0.48
PTPRN-203ENST00000412847 PXDNLA1KZ92 1463 aa18.02■□□□□ 0.48
PTPRN-203ENST00000412847 MYH14Q7Z406 1995 aaKnown RBP18.02■□□□□ 0.47
PTPRN-203ENST00000412847 GNPATO15228 680 aa18.01■□□□□ 0.47
PTPRN-203ENST00000412847 CDCA8Q53HL2 280 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms