RNA–Protein interactions for RNA: ENST00000412507.1

TRIM56-202, Transcript of tripartite motif containing 56, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene TRIM56, Length 1,129 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-202ENST00000412507 DOT1LQ8TEK3 1739 aa25.75■■□□□ 1.71
TRIM56-202ENST00000412507 DDX54Q8TDD1 881 aaKnown RBP25.75■■□□□ 1.71
TRIM56-202ENST00000412507 PARD3Q8TEW0 1356 aa25.73■■□□□ 1.71
TRIM56-202ENST00000412507 ZCRB1Q8TBF4 217 aaKnown RBP25.73■■□□□ 1.71
TRIM56-202ENST00000412507 RAPGEF4Q8WZA2 1011 aa25.73■■□□□ 1.71
TRIM56-202ENST00000412507 ACSBG1Q96GR2 724 aa25.73■■□□□ 1.71
TRIM56-202ENST00000412507 PKD1L3Q7Z443 1732 aa25.72■■□□□ 1.71
TRIM56-202ENST00000412507 KCNQ2O43526 872 aa25.71■■□□□ 1.71
TRIM56-202ENST00000412507 TATP17735 454 aaPredicted RBP25.71■■□□□ 1.71
TRIM56-202ENST00000412507 NCAPD2Q15021 1401 aa25.71■■□□□ 1.71
TRIM56-202ENST00000412507 EIF4A2Q14240 407 aaKnown RBP25.7■■□□□ 1.7
TRIM56-202ENST00000412507 EYA1Q99502 592 aa25.7■■□□□ 1.7
TRIM56-202ENST00000412507 CC2D1BQ5T0F9 858 aaKnown RBP25.69■■□□□ 1.7
TRIM56-202ENST00000412507 PLSCR1O15162 318 aa25.68■■□□□ 1.7
TRIM56-202ENST00000412507 PSDA5PKW4 1024 aaPredicted RBP25.66■■□□□ 1.7
TRIM56-202ENST00000412507 CNGB1Q14028 1251 aaPredicted RBP25.66■■□□□ 1.7
TRIM56-202ENST00000412507 ITGB4P16144 1822 aa25.65■■□□□ 1.7
TRIM56-202ENST00000412507 NPC1L1Q9UHC9 1359 aa25.63■■□□□ 1.69
TRIM56-202ENST00000412507 R3HDM1Q15032 1099 aaKnown RBP25.62■■□□□ 1.69
TRIM56-202ENST00000412507 TOGARAM1Q9Y4F4 1720 aa25.61■■□□□ 1.69
TRIM56-202ENST00000412507 IGSF1Q8N6C5 1336 aa25.61■■□□□ 1.69
TRIM56-202ENST00000412507 PCDH11XQ9BZA7 1347 aa25.61■■□□□ 1.69
TRIM56-202ENST00000412507 PCDH11YQ9BZA8 1340 aa25.61■■□□□ 1.69
TRIM56-202ENST00000412507 PROM2Q8N271 834 aa25.6■■□□□ 1.69
TRIM56-202ENST00000412507 MTHFSP49914 203 aa25.59■■□□□ 1.69
TRIM56-202ENST00000412507 SYTL4Q96C24 671 aaPredicted RBP25.59■■□□□ 1.69
TRIM56-202ENST00000412507 LY75O60449 1722 aa25.58■■□□□ 1.69
TRIM56-202ENST00000412507 CYP27B1O15528 508 aa25.58■■□□□ 1.69
TRIM56-202ENST00000412507 PRIM1P49642 420 aaKnown RBP25.58■■□□□ 1.69
TRIM56-202ENST00000412507 NBPF14Q5TI25 921 aa25.58■■□□□ 1.69
TRIM56-202ENST00000412507 TXNRD1Q16881 649 aa25.57■■□□□ 1.68
TRIM56-202ENST00000412507 SPG7Q9UQ90 795 aa25.56■■□□□ 1.68
TRIM56-202ENST00000412507 IL13P35225 146 aa25.54■■□□□ 1.68
TRIM56-202ENST00000412507 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.53■■□□□ 1.68
TRIM56-202ENST00000412507 VIRMAQ69YN4 1812 aaKnown RBP25.53■■□□□ 1.68
TRIM56-202ENST00000412507 AEBP1Q8IUX7 1158 aa25.52■■□□□ 1.68
TRIM56-202ENST00000412507 LRP5O75197 1615 aa25.52■■□□□ 1.68
TRIM56-202ENST00000412507 ANO8Q9HCE9 1232 aaPredicted RBP25.51■■□□□ 1.67
TRIM56-202ENST00000412507 PAPPAQ13219 1627 aa25.5■■□□□ 1.67
TRIM56-202ENST00000412507 PLEKHG2Q9H7P9 1386 aa25.49■■□□□ 1.67
TRIM56-202ENST00000412507 SULT6B1Q6IMI4 303 aa25.49■■□□□ 1.67
TRIM56-202ENST00000412507 NKX1-1Q15270 411 aaPredicted RBP25.48■■□□□ 1.67
TRIM56-202ENST00000412507 IFNL2Q8IZJ0 200 aa25.48■■□□□ 1.67
TRIM56-202ENST00000412507 COL3A1P02461 1466 aaPredicted RBP25.47■■□□□ 1.67
TRIM56-202ENST00000412507 KDRP35968 1356 aa25.47■■□□□ 1.67
TRIM56-202ENST00000412507 CASZ1Q86V15 1759 aa25.47■■□□□ 1.67
TRIM56-202ENST00000412507 PHKG2P15735 406 aa25.47■■□□□ 1.67
TRIM56-202ENST00000412507 SRCAPQ6ZRS2 3230 aa25.47■■□□□ 1.67
TRIM56-202ENST00000412507 DIAPH1O60610 1272 aaKnown RBP25.46■■□□□ 1.67
TRIM56-202ENST00000412507 PLEKHO1Q53GL0 409 aaPredicted RBP25.46■■□□□ 1.67
TRIM56-202ENST00000412507 TAF1LQ8IZX4 1826 aa25.46■■□□□ 1.67
TRIM56-202ENST00000412507 TUBGCP6Q96RT7 1819 aa25.46■■□□□ 1.67
TRIM56-202ENST00000412507 MPRIPQ6WCQ1 1025 aa25.45■■□□□ 1.66
TRIM56-202ENST00000412507 LRRC4BQ9NT99 713 aa25.45■■□□□ 1.66
TRIM56-202ENST00000412507 STK32BQ9NY57 414 aa25.44■■□□□ 1.66
TRIM56-202ENST00000412507 SCN11AQ9UI33 1791 aa25.43■■□□□ 1.66
TRIM56-202ENST00000412507 HMOX1P09601 288 aa25.42■■□□□ 1.66
TRIM56-202ENST00000412507 SLC15A2Q16348 729 aa25.42■■□□□ 1.66
TRIM56-202ENST00000412507 AMOTQ4VCS5 1084 aa25.42■■□□□ 1.66
TRIM56-202ENST00000412507 SLC27A3Q5K4L6 730 aa25.42■■□□□ 1.66
TRIM56-202ENST00000412507 ZNF530Q6P9A1 599 aaPredicted RBP25.42■■□□□ 1.66
TRIM56-202ENST00000412507 QSER1Q2KHR3 1735 aa25.42■■□□□ 1.66
TRIM56-202ENST00000412507 C5P01031 1676 aa25.42■■□□□ 1.66
TRIM56-202ENST00000412507 PPP2R1AP30153 589 aa25.41■■□□□ 1.66
TRIM56-202ENST00000412507 KCNQ4P56696 695 aa25.41■■□□□ 1.66
TRIM56-202ENST00000412507 ZEB1P37275 1124 aaPredicted RBP25.39■■□□□ 1.66
TRIM56-202ENST00000412507 PIGBQ92521 554 aa25.39■■□□□ 1.66
TRIM56-202ENST00000412507 CCNL1Q9UK58 526 aaPredicted RBP25.38■■□□□ 1.65
TRIM56-202ENST00000412507 PALLDQ8WX93 1383 aa25.37■■□□□ 1.65
TRIM56-202ENST00000412507 U2SURPO15042 1029 aaKnown RBP25.37■■□□□ 1.65
TRIM56-202ENST00000412507 ZNF827Q17R98 1081 aa25.37■■□□□ 1.65
TRIM56-202ENST00000412507 CFAP53Q96M91 514 aa25.37■■□□□ 1.65
TRIM56-202ENST00000412507 PDGFDQ9GZP0 370 aaPredicted RBP25.37■■□□□ 1.65
TRIM56-202ENST00000412507 TMOD3Q9NYL9 352 aa25.37■■□□□ 1.65
TRIM56-202ENST00000412507 HSP90AB1P08238 724 aaKnown RBP25.36■■□□□ 1.65
TRIM56-202ENST00000412507 DDX10Q13206 875 aaKnown RBP25.36■■□□□ 1.65
TRIM56-202ENST00000412507 C1orf141Q5JVX7 400 aa25.36■■□□□ 1.65
TRIM56-202ENST00000412507 KDM6AO15550 1401 aaPredicted RBP25.36■■□□□ 1.65
TRIM56-202ENST00000412507 DCAF5Q96JK2 942 aa25.35■■□□□ 1.65
TRIM56-202ENST00000412507 SMARCC1Q92922 1105 aaPredicted RBP25.34■■□□□ 1.65
TRIM56-202ENST00000412507 AKT1S1Q96B36 256 aa25.33■■□□□ 1.65
TRIM56-202ENST00000412507 ERVV-2B6SEH9 535 aa25.32■■□□□ 1.64
TRIM56-202ENST00000412507 SPON1Q9HCB6 807 aa25.3■■□□□ 1.64
TRIM56-202ENST00000412507 ASAP1Q9ULH1 1129 aa25.3■■□□□ 1.64
TRIM56-202ENST00000412507 C4BP0C0L5 1744 aa25.29■■□□□ 1.64
TRIM56-202ENST00000412507 ZBTB7AO95365 584 aa25.29■■□□□ 1.64
TRIM56-202ENST00000412507 MTHFSDQ2M296 383 aaKnown RBP25.29■■□□□ 1.64
TRIM56-202ENST00000412507 AKAP4Q5JQC9 854 aa25.29■■□□□ 1.64
TRIM56-202ENST00000412507 ADAMTS7Q9UKP4 1686 aa25.28■■□□□ 1.64
TRIM56-202ENST00000412507 UBR3Q6ZT12 1888 aa25.28■■□□□ 1.64
TRIM56-202ENST00000412507 CABP4P57796 275 aa25.27■■□□□ 1.64
TRIM56-202ENST00000412507 ATG3Q9NT62 314 aa25.27■■□□□ 1.64
TRIM56-202ENST00000412507 NUDCQ9Y266 331 aa25.27■■□□□ 1.64
TRIM56-202ENST00000412507 TFCP2L1Q9NZI6 479 aa25.26■■□□□ 1.63
TRIM56-202ENST00000412507 ZNF831Q5JPB2 1677 aa25.26■■□□□ 1.63
TRIM56-202ENST00000412507 ATF5Q9Y2D1 282 aaPredicted RBP25.25■■□□□ 1.63
TRIM56-202ENST00000412507 PNPLA7Q6ZV29 1317 aa25.24■■□□□ 1.63
TRIM56-202ENST00000412507 LOC102724428A0A0B4J2F2 783 aa25.24■■□□□ 1.63
TRIM56-202ENST00000412507 SIK1P57059 783 aa25.24■■□□□ 1.63
TRIM56-202ENST00000412507 NFATC2IPQ8NCF5 419 aa25.24■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms