RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 NCAPD2Q15021 1401 aa17.71■□□□□ 0.42
LIMS1-204ENST00000409441 TATP17735 454 aaPredicted RBP17.7■□□□□ 0.42
LIMS1-204ENST00000409441 PRKAR2BP31323 418 aa17.7■□□□□ 0.42
LIMS1-204ENST00000409441 RBM6P78332 1123 aaKnown RBP17.7■□□□□ 0.42
LIMS1-204ENST00000409441 ERICH6BQ5W0A0 696 aa17.7■□□□□ 0.42
LIMS1-204ENST00000409441 POTEAQ6S8J7 498 aa17.7■□□□□ 0.42
LIMS1-204ENST00000409441 PNNQ9H307 717 aaKnown RBP17.7■□□□□ 0.42
LIMS1-204ENST00000409441 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.7■□□□□ 0.42
LIMS1-204ENST00000409441 RGPD1P0DJD0 1748 aa17.69■□□□□ 0.42
LIMS1-204ENST00000409441 FAM208AQ9UK61 1670 aaKnown RBP17.69■□□□□ 0.42
LIMS1-204ENST00000409441 ONECUT3O60422 494 aaPredicted RBP17.69■□□□□ 0.42
LIMS1-204ENST00000409441 RXRBP28702 533 aa17.69■□□□□ 0.42
LIMS1-204ENST00000409441 PLEKHF1Q96S99 279 aa17.69■□□□□ 0.42
LIMS1-204ENST00000409441 CDCA7Q9BWT1 371 aaPredicted RBP17.69■□□□□ 0.42
LIMS1-204ENST00000409441 CCDC146Q8IYE0 955 aa17.68■□□□□ 0.42
LIMS1-204ENST00000409441 PHACTR3Q96KR7 559 aa17.68■□□□□ 0.42
LIMS1-204ENST00000409441 NEFMP07197 916 aa17.66■□□□□ 0.42
LIMS1-204ENST00000409441 RUNDC1Q96C34 613 aa17.66■□□□□ 0.42
LIMS1-204ENST00000409441 A0A0G2JS52 829 aa17.65■□□□□ 0.42
LIMS1-204ENST00000409441 EXOC5O00471 708 aa17.65■□□□□ 0.42
LIMS1-204ENST00000409441 MYT1Q01538 1121 aa17.65■□□□□ 0.42
LIMS1-204ENST00000409441 PLEKHO1Q53GL0 409 aaPredicted RBP17.65■□□□□ 0.42
LIMS1-204ENST00000409441 MEGF6O75095 1541 aa17.65■□□□□ 0.42
LIMS1-204ENST00000409441 AMOTQ4VCS5 1084 aa17.65■□□□□ 0.42
LIMS1-204ENST00000409441 ZCRB1Q8TBF4 217 aaKnown RBP17.65■□□□□ 0.42
LIMS1-204ENST00000409441 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.65■□□□□ 0.42
LIMS1-204ENST00000409441 SPG7Q9UQ90 795 aa17.65■□□□□ 0.42
LIMS1-204ENST00000409441 GLI3P10071 1580 aa17.64■□□□□ 0.42
LIMS1-204ENST00000409441 DISP2A7MBM2 1401 aa17.64■□□□□ 0.41
LIMS1-204ENST00000409441 SEPT12Q8IYM1 358 aa17.64■□□□□ 0.41
LIMS1-204ENST00000409441 DDB1Q16531 1140 aa17.63■□□□□ 0.41
LIMS1-204ENST00000409441 MTHFSDQ2M296 383 aaKnown RBP17.63■□□□□ 0.41
LIMS1-204ENST00000409441 MAPK8IP3Q9UPT6 1336 aa17.63■□□□□ 0.41
LIMS1-204ENST00000409441 OVOS2A0A0G2JMS6 1433 aa17.63■□□□□ 0.41
LIMS1-204ENST00000409441 DCAF8L1A6NGE4 600 aa17.61■□□□□ 0.41
LIMS1-204ENST00000409441 DDX54Q8TDD1 881 aaKnown RBP17.61■□□□□ 0.41
LIMS1-204ENST00000409441 APAF1O14727 1248 aa17.61■□□□□ 0.41
LIMS1-204ENST00000409441 PLEKHG2Q9H7P9 1386 aa17.6■□□□□ 0.41
LIMS1-204ENST00000409441 PDE3BQ13370 1112 aa17.6■□□□□ 0.41
LIMS1-204ENST00000409441 ZNF530Q6P9A1 599 aaPredicted RBP17.6■□□□□ 0.41
LIMS1-204ENST00000409441 GAS2L2Q8NHY3 880 aa17.6■□□□□ 0.41
LIMS1-204ENST00000409441 SENP3-EIF4A1A0A087X0R7 540 aa17.59■□□□□ 0.41
LIMS1-204ENST00000409441 CYP27B1O15528 508 aa17.58■□□□□ 0.41
LIMS1-204ENST00000409441 TMPOP42166 694 aaKnown RBP17.58■□□□□ 0.41
LIMS1-204ENST00000409441 NEUROD2Q15784 382 aa17.58■□□□□ 0.41
LIMS1-204ENST00000409441 NFE2L2Q16236 605 aa17.58■□□□□ 0.41
LIMS1-204ENST00000409441 RRP7AQ9Y3A4 280 aaKnown RBP17.58■□□□□ 0.41
LIMS1-204ENST00000409441 C1orf141Q5JVX7 400 aa17.58■□□□□ 0.4
LIMS1-204ENST00000409441 IFNL2Q8IZJ0 200 aa17.58■□□□□ 0.4
LIMS1-204ENST00000409441 PCDH11XQ9BZA7 1347 aa17.57■□□□□ 0.4
LIMS1-204ENST00000409441 PCDH11YQ9BZA8 1340 aa17.57■□□□□ 0.4
LIMS1-204ENST00000409441 PHKG2P15735 406 aa17.57■□□□□ 0.4
LIMS1-204ENST00000409441 RIPK4P57078 832 aa17.57■□□□□ 0.4
LIMS1-204ENST00000409441 AKAP4Q5JQC9 854 aa17.57■□□□□ 0.4
LIMS1-204ENST00000409441 MARCH10Q8NA82 808 aaPredicted RBP17.57■□□□□ 0.4
LIMS1-204ENST00000409441 PARP4Q9UKK3 1724 aaKnown RBP17.55■□□□□ 0.4
LIMS1-204ENST00000409441 GNAT3A8MTJ3 354 aa17.55■□□□□ 0.4
LIMS1-204ENST00000409441 THSD7AQ9UPZ6 1657 aa17.55■□□□□ 0.4
LIMS1-204ENST00000409441 RNF123Q5XPI4 1314 aa17.55■□□□□ 0.4
LIMS1-204ENST00000409441 KRT27Q7Z3Y8 459 aa17.54■□□□□ 0.4
LIMS1-204ENST00000409441 TNS2Q63HR2 1409 aa17.54■□□□□ 0.4
LIMS1-204ENST00000409441 NKX1-1Q15270 411 aaPredicted RBP17.54■□□□□ 0.4
LIMS1-204ENST00000409441 MPRIPQ6WCQ1 1025 aa17.54■□□□□ 0.4
LIMS1-204ENST00000409441 SALL2Q9Y467 1007 aaPredicted RBP17.54■□□□□ 0.4
LIMS1-204ENST00000409441 HSP90AB1P08238 724 aaKnown RBP17.53■□□□□ 0.4
LIMS1-204ENST00000409441 FAM182BQ5T319 152 aa17.53■□□□□ 0.4
LIMS1-204ENST00000409441 WNK3Q9BYP7 1800 aa17.52■□□□□ 0.4
LIMS1-204ENST00000409441 RGS12O14924 1447 aa17.52■□□□□ 0.4
LIMS1-204ENST00000409441 HTATSF1O43719 755 aaKnown RBP17.52■□□□□ 0.4
LIMS1-204ENST00000409441 RTF1Q92541 710 aaKnown RBP17.52■□□□□ 0.4
LIMS1-204ENST00000409441 LGR6Q9HBX8 967 aa17.52■□□□□ 0.4
LIMS1-204ENST00000409441 PPP4R2Q9NY27 417 aa17.52■□□□□ 0.4
LIMS1-204ENST00000409441 IL17REQ8NFR9 667 aa17.51■□□□□ 0.39
LIMS1-204ENST00000409441 DCAF5Q96JK2 942 aa17.51■□□□□ 0.39
LIMS1-204ENST00000409441 TRIM35Q9UPQ4 493 aa17.51■□□□□ 0.39
LIMS1-204ENST00000409441 MAP3K5Q99683 1374 aa17.51■□□□□ 0.39
LIMS1-204ENST00000409441 LRRC37A3O60309 1634 aa17.51■□□□□ 0.39
LIMS1-204ENST00000409441 PKD1L3Q7Z443 1732 aa17.51■□□□□ 0.39
LIMS1-204ENST00000409441 DCTN1Q14203 1278 aa17.5■□□□□ 0.39
LIMS1-204ENST00000409441 MCM10Q7L590 875 aa17.5■□□□□ 0.39
LIMS1-204ENST00000409441 RNMTO43148 476 aaKnown RBP17.5■□□□□ 0.39
LIMS1-204ENST00000409441 LMOD3Q0VAK6 560 aa17.5■□□□□ 0.39
LIMS1-204ENST00000409441 NCBP3Q53F19 620 aaKnown RBP17.5■□□□□ 0.39
LIMS1-204ENST00000409441 NGEFQ8N5V2 710 aa17.5■□□□□ 0.39
LIMS1-204ENST00000409441 CCDC27Q2M243 656 aa17.48■□□□□ 0.39
LIMS1-204ENST00000409441 THUMPD2Q9BTF0 503 aaKnown RBP17.48■□□□□ 0.39
LIMS1-204ENST00000409441 RNF39Q9H2S5 420 aa17.48■□□□□ 0.39
LIMS1-204ENST00000409441 IRX6P78412 446 aaPredicted RBP17.47■□□□□ 0.39
LIMS1-204ENST00000409441 FAM196AQ6ZSG2 479 aa17.47■□□□□ 0.39
LIMS1-204ENST00000409441 WWC1Q8IX03 1113 aa17.47■□□□□ 0.39
LIMS1-204ENST00000409441 SHANK3Q9BYB0 1731 aa17.47■□□□□ 0.39
LIMS1-204ENST00000409441 ERVV-2B6SEH9 535 aa17.47■□□□□ 0.39
LIMS1-204ENST00000409441 KDM6AO15550 1401 aaPredicted RBP17.46■□□□□ 0.39
LIMS1-204ENST00000409441 PRIM1P49642 420 aaKnown RBP17.46■□□□□ 0.39
LIMS1-204ENST00000409441 ACSBG1Q96GR2 724 aa17.46■□□□□ 0.39
LIMS1-204ENST00000409441 TSHZ2Q9NRE2 1034 aa17.46■□□□□ 0.39
LIMS1-204ENST00000409441 CABP4P57796 275 aa17.45■□□□□ 0.38
LIMS1-204ENST00000409441 NFATC2IPQ8NCF5 419 aa17.45■□□□□ 0.38
LIMS1-204ENST00000409441 BRWD3Q6RI45 1802 aa17.45■□□□□ 0.38
LIMS1-204ENST00000409441 HOXD11P31277 338 aaPredicted RBP17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms