RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 UPF1Q92900 1129 aaKnown RBP eCLIP27.33■■□□□ 1.97
PTCD3-202ENST00000409326 PLEKHG2Q9H7P9 1386 aa27.33■■□□□ 1.97
PTCD3-202ENST00000409326 KDRP35968 1356 aa27.32■■□□□ 1.96
PTCD3-202ENST00000409326 ZCRB1Q8TBF4 217 aaKnown RBP27.31■■□□□ 1.96
PTCD3-202ENST00000409326 BCL9O00512 1426 aa27.31■■□□□ 1.96
PTCD3-202ENST00000409326 TNS1Q9HBL0 1735 aaKnown RBP27.3■■□□□ 1.96
PTCD3-202ENST00000409326 PRKRIP1Q9H875 184 aaPredicted RBP27.3■■□□□ 1.96
PTCD3-202ENST00000409326 MYBBP1AQ9BQG0 1328 aaKnown RBP27.3■■□□□ 1.96
PTCD3-202ENST00000409326 SULT6B1Q6IMI4 303 aa27.28■■□□□ 1.96
PTCD3-202ENST00000409326 AEBP1Q8IUX7 1158 aa27.28■■□□□ 1.96
PTCD3-202ENST00000409326 KAT6BQ8WYB5 2073 aa27.26■■□□□ 1.95
PTCD3-202ENST00000409326 PCDH11XQ9BZA7 1347 aa27.25■■□□□ 1.95
PTCD3-202ENST00000409326 PCDH11YQ9BZA8 1340 aa27.25■■□□□ 1.95
PTCD3-202ENST00000409326 NHSQ6T4R5 1651 aa27.25■■□□□ 1.95
PTCD3-202ENST00000409326 CCDC125Q86Z20 511 aa27.25■■□□□ 1.95
PTCD3-202ENST00000409326 DDX54Q8TDD1 881 aaKnown RBP27.25■■□□□ 1.95
PTCD3-202ENST00000409326 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.24■■□□□ 1.951e-9■■■□□ 18.3
PTCD3-202ENST00000409326 DOT1LQ8TEK3 1739 aa27.24■■□□□ 1.95
PTCD3-202ENST00000409326 U2SURPO15042 1029 aaKnown RBP27.23■■□□□ 1.95
PTCD3-202ENST00000409326 NUDCQ9Y266 331 aa27.23■■□□□ 1.95
PTCD3-202ENST00000409326 HMOX1P09601 288 aa27.22■■□□□ 1.95
PTCD3-202ENST00000409326 SPG7Q9UQ90 795 aa27.22■■□□□ 1.95
PTCD3-202ENST00000409326 TRIM37O94972 964 aa27.2■■□□□ 1.94
PTCD3-202ENST00000409326 CYP27B1O15528 508 aa27.18■■□□□ 1.94
PTCD3-202ENST00000409326 SF3B2Q13435 895 aaKnown RBP27.18■■□□□ 1.94
PTCD3-202ENST00000409326 AMOTQ4VCS5 1084 aa27.18■■□□□ 1.94
PTCD3-202ENST00000409326 TOGARAM1Q9Y4F4 1720 aa27.18■■□□□ 1.94
PTCD3-202ENST00000409326 PLEKHO1Q53GL0 409 aaPredicted RBP27.17■■□□□ 1.94
PTCD3-202ENST00000409326 BTAF1O14981 1849 aa27.16■■□□□ 1.94
PTCD3-202ENST00000409326 ANP32CO43423 234 aa27.15■■□□□ 1.94
PTCD3-202ENST00000409326 U2AF1L5P0DN76 240 aaPredicted RBP27.15■■□□□ 1.94
PTCD3-202ENST00000409326 U2AF1Q01081 240 aaKnown RBP eCLIP27.15■■□□□ 1.94
PTCD3-202ENST00000409326 ITGB4P16144 1822 aa27.15■■□□□ 1.94
PTCD3-202ENST00000409326 RGPD3A6NKT7 1758 aaPredicted RBP27.14■■□□□ 1.94
PTCD3-202ENST00000409326 RGPD4Q7Z3J3 1758 aa27.14■■□□□ 1.94
PTCD3-202ENST00000409326 VIRMAQ69YN4 1812 aaKnown RBP27.14■■□□□ 1.94
PTCD3-202ENST00000409326 PHKG2P15735 406 aa27.13■■□□□ 1.93
PTCD3-202ENST00000409326 IFNL2Q8IZJ0 200 aa27.13■■□□□ 1.93
PTCD3-202ENST00000409326 ACSBG1Q96GR2 724 aa27.13■■□□□ 1.93
PTCD3-202ENST00000409326 BCL11BQ9C0K0 894 aaPredicted RBP27.13■■□□□ 1.93
PTCD3-202ENST00000409326 RSPH6AQ9H0K4 717 aa27.13■■□□□ 1.93
PTCD3-202ENST00000409326 NKX1-1Q15270 411 aaPredicted RBP27.12■■□□□ 1.93
PTCD3-202ENST00000409326 ZNF530Q6P9A1 599 aaPredicted RBP27.11■■□□□ 1.93
PTCD3-202ENST00000409326 KCNQ2O43526 872 aa27.1■■□□□ 1.93
PTCD3-202ENST00000409326 BAG6P46379 1132 aa27.1■■□□□ 1.93
PTCD3-202ENST00000409326 PTF1AQ7RTS3 328 aa27.1■■□□□ 1.93
PTCD3-202ENST00000409326 SCN11AQ9UI33 1791 aa27.09■■□□□ 1.93
PTCD3-202ENST00000409326 FCHSD2O94868 740 aa27.09■■□□□ 1.93
PTCD3-202ENST00000409326 PRKAR2BP31323 418 aa27.09■■□□□ 1.93
PTCD3-202ENST00000409326 APBA3O96018 575 aa27.08■■□□□ 1.93
PTCD3-202ENST00000409326 DEFB132Q7Z7B7 95 aa27.08■■□□□ 1.93
PTCD3-202ENST00000409326 RREB1Q92766 1687 aa27.07■■□□□ 1.92
PTCD3-202ENST00000409326 HSP90AB1P08238 724 aaKnown RBP27.06■■□□□ 1.92
PTCD3-202ENST00000409326 C1orf141Q5JVX7 400 aa27.06■■□□□ 1.92
PTCD3-202ENST00000409326 PRIM1P49642 420 aaKnown RBP27.05■■□□□ 1.92
PTCD3-202ENST00000409326 MTHFSDQ2M296 383 aaKnown RBP27.05■■□□□ 1.92
PTCD3-202ENST00000409326 ADAMTS7Q9UKP4 1686 aa27.05■■□□□ 1.92
PTCD3-202ENST00000409326 SYTL4Q96C24 671 aaPredicted RBP27.04■■□□□ 1.92
PTCD3-202ENST00000409326 KDM6AO15550 1401 aaPredicted RBP27.04■■□□□ 1.92
PTCD3-202ENST00000409326 EN1Q05925 392 aaPredicted RBP27.03■■□□□ 1.92
PTCD3-202ENST00000409326 AKAP4Q5JQC9 854 aa27.03■■□□□ 1.92
PTCD3-202ENST00000409326 DCAF5Q96JK2 942 aa27.03■■□□□ 1.92
PTCD3-202ENST00000409326 GAS2L2Q8NHY3 880 aa27.02■■□□□ 1.92
PTCD3-202ENST00000409326 PHACTR3Q96KR7 559 aa27.02■■□□□ 1.92
PTCD3-202ENST00000409326 DLG5Q8TDM6 1919 aa27.02■■□□□ 1.92
PTCD3-202ENST00000409326 PLSCR1O15162 318 aa27.01■■□□□ 1.91
PTCD3-202ENST00000409326 CAMKK2Q96RR4 588 aa27.01■■□□□ 1.91
PTCD3-202ENST00000409326 LY75O60449 1722 aa27■■□□□ 1.91
PTCD3-202ENST00000409326 NUP188Q5SRE5 1749 aa27■■□□□ 1.91
PTCD3-202ENST00000409326 WDR43Q15061 677 aaKnown RBP eCLIP27■■□□□ 1.91
PTCD3-202ENST00000409326 PNNQ9H307 717 aaKnown RBP27■■□□□ 1.91
PTCD3-202ENST00000409326 PLEKHF1Q96S99 279 aa26.99■■□□□ 1.91
PTCD3-202ENST00000409326 EZH2Q15910 746 aaKnown RBP26.98■■□□□ 1.91
PTCD3-202ENST00000409326 CCDC184Q52MB2 194 aa26.98■■□□□ 1.91
PTCD3-202ENST00000409326 MAP3K5Q99683 1374 aa26.97■■□□□ 1.91
PTCD3-202ENST00000409326 ERVV-2B6SEH9 535 aa26.97■■□□□ 1.91
PTCD3-202ENST00000409326 MPRIPQ6WCQ1 1025 aa26.97■■□□□ 1.91
PTCD3-202ENST00000409326 MRC1P22897 1456 aa26.96■■□□□ 1.91
PTCD3-202ENST00000409326 NEFMP07197 916 aa26.96■■□□□ 1.91
PTCD3-202ENST00000409326 TMOD3Q9NYL9 352 aa26.95■■□□□ 1.9
PTCD3-202ENST00000409326 MAPK8IP3Q9UPT6 1336 aa26.93■■□□□ 1.9
PTCD3-202ENST00000409326 GNAT3A8MTJ3 354 aa26.93■■□□□ 1.9
PTCD3-202ENST00000409326 PIGBQ92521 554 aa26.93■■□□□ 1.9
PTCD3-202ENST00000409326 MRS2Q9HD23 443 aa26.93■■□□□ 1.9
PTCD3-202ENST00000409326 ADAMTS8Q9UP79 889 aa26.93■■□□□ 1.9
PTCD3-202ENST00000409326 SIPA1L3O60292 1781 aaPredicted RBP26.93■■□□□ 1.9
PTCD3-202ENST00000409326 RNMTO43148 476 aaKnown RBP26.92■■□□□ 1.9
PTCD3-202ENST00000409326 LGR6Q9HBX8 967 aa26.91■■□□□ 1.9
PTCD3-202ENST00000409326 CABP4P57796 275 aa26.9■■□□□ 1.9
PTCD3-202ENST00000409326 TXNRD1Q16881 649 aa26.89■■□□□ 1.9
PTCD3-202ENST00000409326 PROM2Q8N271 834 aa26.89■■□□□ 1.9
PTCD3-202ENST00000409326 PAPPAQ13219 1627 aa26.89■■□□□ 1.9
PTCD3-202ENST00000409326 PALLDQ8WX93 1383 aa26.88■■□□□ 1.89
PTCD3-202ENST00000409326 CEMIPQ8WUJ3 1361 aa26.87■■□□□ 1.89
PTCD3-202ENST00000409326 NFE2L2Q16236 605 aa26.87■■□□□ 1.89
PTCD3-202ENST00000409326 DIEXFQ68CQ4 756 aaKnown RBP26.87■■□□□ 1.89
PTCD3-202ENST00000409326 SMARCC1Q92922 1105 aaPredicted RBP26.87■■□□□ 1.89
PTCD3-202ENST00000409326 SLC52A2Q9HAB3 445 aa26.87■■□□□ 1.89
PTCD3-202ENST00000409326 TAF1LQ8IZX4 1826 aa26.86■■□□□ 1.89
PTCD3-202ENST00000409326 CCDC146Q8IYE0 955 aa26.86■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms