RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 HTATSF1O43719 755 aaKnown RBP24.25■■□□□ 1.47
USP39-202ENST00000409025 CRB1P82279 1406 aa24.25■■□□□ 1.47
USP39-202ENST00000409025 NPHP3Q7Z494 1330 aa24.24■■□□□ 1.47
USP39-202ENST00000409025 PLEKHG5O94827 1062 aa24.24■■□□□ 1.47
USP39-202ENST00000409025 C8orf58Q8NAV2 365 aa24.24■■□□□ 1.47
USP39-202ENST00000409025 ELL2O00472 640 aaPredicted RBP24.23■■□□□ 1.47
USP39-202ENST00000409025 HAP1P54257 671 aaPredicted RBP24.22■■□□□ 1.47
USP39-202ENST00000409025 MRPL50Q8N5N7 158 aaKnown RBP24.22■■□□□ 1.47
USP39-202ENST00000409025 USHBP1Q8N6Y0 703 aa24.22■■□□□ 1.47
USP39-202ENST00000409025 GNAT3A8MTJ3 354 aa24.22■■□□□ 1.47
USP39-202ENST00000409025 NBPF6Q5VWK0 638 aa24.22■■□□□ 1.47
USP39-202ENST00000409025 NBPF4Q96M43 638 aa24.22■■□□□ 1.47
USP39-202ENST00000409025 KIAA0232Q92628 1395 aa24.2■■□□□ 1.47
USP39-202ENST00000409025 DDX17Q92841 729 aaKnown RBP24.2■■□□□ 1.46
USP39-202ENST00000409025 DDX19BQ9UMR2 479 aa24.2■■□□□ 1.46
USP39-202ENST00000409025 ARHGAP45Q92619 1136 aa24.19■■□□□ 1.46
USP39-202ENST00000409025 ZNF335Q9H4Z2 1342 aaPredicted RBP24.19■■□□□ 1.46
USP39-202ENST00000409025 MED1Q15648 1581 aaPredicted RBP24.19■■□□□ 1.46
USP39-202ENST00000409025 MAP3K5Q99683 1374 aa24.19■■□□□ 1.46
USP39-202ENST00000409025 ITPRIPQ8IWB1 547 aa24.18■■□□□ 1.46
USP39-202ENST00000409025 RGPD2P0DJD1 1756 aa24.18■■□□□ 1.46
USP39-202ENST00000409025 IGHDP01880 384 aa24.18■■□□□ 1.46
USP39-202ENST00000409025 TNS3Q68CZ2 1445 aa24.17■■□□□ 1.46
USP39-202ENST00000409025 ANKRD24Q8TF21 1146 aa24.17■■□□□ 1.46
USP39-202ENST00000409025 LRRC37A3O60309 1634 aa24.17■■□□□ 1.46
USP39-202ENST00000409025 TMEM57Q8N5G2 664 aa24.16■■□□□ 1.46
USP39-202ENST00000409025 TSPYL4Q9UJ04 414 aa24.16■■□□□ 1.46
USP39-202ENST00000409025 PXDNQ92626 1479 aa24.16■■□□□ 1.46
USP39-202ENST00000409025 LRRC59Q96AG4 307 aaKnown RBP24.16■■□□□ 1.46
USP39-202ENST00000409025 PCDHB15Q9Y5E8 787 aa24.15■■□□□ 1.46
USP39-202ENST00000409025 ZC3H6P61129 1189 aaKnown RBP24.14■■□□□ 1.45
USP39-202ENST00000409025 NCAPD2Q15021 1401 aa24.13■■□□□ 1.45
USP39-202ENST00000409025 SPATA31A3Q5VYP0 1347 aa24.13■■□□□ 1.45
USP39-202ENST00000409025 BRINP3Q76B58 766 aa24.13■■□□□ 1.45
USP39-202ENST00000409025 MIS18AQ9NYP9 233 aa24.13■■□□□ 1.45
USP39-202ENST00000409025 SKAP1Q86WV1 359 aa24.12■■□□□ 1.45
USP39-202ENST00000409025 RWDD1Q9H446 243 aaPredicted RBP24.12■■□□□ 1.45
USP39-202ENST00000409025 AXIN2Q9Y2T1 843 aa24.12■■□□□ 1.45
USP39-202ENST00000409025 KRT24Q2M2I5 525 aa24.12■■□□□ 1.45
USP39-202ENST00000409025 IL17REQ8NFR9 667 aa24.12■■□□□ 1.45
USP39-202ENST00000409025 CAMTA1Q9Y6Y1 1673 aa24.11■■□□□ 1.45
USP39-202ENST00000409025 PLEKHO1Q53GL0 409 aaPredicted RBP24.11■■□□□ 1.45
USP39-202ENST00000409025 API5Q9BZZ5 524 aaKnown RBP24.11■■□□□ 1.45
USP39-202ENST00000409025 RGPD5Q99666 1765 aa24.11■■□□□ 1.45
USP39-202ENST00000409025 BABAM1Q9NWV8 329 aa24.1■■□□□ 1.45
USP39-202ENST00000409025 SLAIN2Q9P270 581 aa24.1■■□□□ 1.45
USP39-202ENST00000409025 AMOTQ4VCS5 1084 aa24.09■■□□□ 1.45
USP39-202ENST00000409025 CHMP4BQ9H444 224 aaKnown RBP24.09■■□□□ 1.45
USP39-202ENST00000409025 TAF7Q15545 349 aaPredicted RBP24.08■■□□□ 1.45
USP39-202ENST00000409025 ERBB3P21860 1342 aa24.08■■□□□ 1.45
USP39-202ENST00000409025 ABCC4O15439 1325 aa24.07■■□□□ 1.44
USP39-202ENST00000409025 ZBTB40Q9NUA8 1239 aa24.07■■□□□ 1.44
USP39-202ENST00000409025 PDE4AP27815 886 aa24.06■■□□□ 1.44
USP39-202ENST00000409025 CRYBG1Q9Y4K1 1723 aa24.06■■□□□ 1.44
USP39-202ENST00000409025 LMO7Q8WWI1 1683 aa24.06■■□□□ 1.44
USP39-202ENST00000409025 AKAP4Q5JQC9 854 aa24.06■■□□□ 1.44
USP39-202ENST00000409025 ZNF530Q6P9A1 599 aaPredicted RBP24.06■■□□□ 1.44
USP39-202ENST00000409025 CABLES1Q8TDN4 633 aa24.06■■□□□ 1.44
USP39-202ENST00000409025 CEMIPQ8WUJ3 1361 aa24.05■■□□□ 1.44
USP39-202ENST00000409025 ABCC6O95255 1503 aa24.05■■□□□ 1.44
USP39-202ENST00000409025 COL18A1P39060 1754 aa24.05■■□□□ 1.44
USP39-202ENST00000409025 RGS3P49796 1198 aa24.04■■□□□ 1.44
USP39-202ENST00000409025 BACH2Q9BYV9 841 aa24.03■■□□□ 1.44
USP39-202ENST00000409025 SOS1Q07889 1333 aaPredicted RBP24.03■■□□□ 1.44
USP39-202ENST00000409025 HDAC1Q13547 482 aaPredicted RBP24.02■■□□□ 1.44
USP39-202ENST00000409025 C1orf141Q5JVX7 400 aa24.02■■□□□ 1.44
USP39-202ENST00000409025 SOS2Q07890 1332 aaPredicted RBP24.02■■□□□ 1.44
USP39-202ENST00000409025 PTPRCP08575 1304 aa24.02■■□□□ 1.43
USP39-202ENST00000409025 CPDO75976 1380 aa24.01■■□□□ 1.43
USP39-202ENST00000409025 ZBTB7BO15156 539 aaPredicted RBP24.01■■□□□ 1.43
USP39-202ENST00000409025 NLRP2Q9NX02 1062 aa24■■□□□ 1.43
USP39-202ENST00000409025 SLC4A2P04920 1241 aa24■■□□□ 1.43
USP39-202ENST00000409025 LGR6Q9HBX8 967 aa24■■□□□ 1.43
USP39-202ENST00000409025 FAM208AQ9UK61 1670 aaKnown RBP23.99■■□□□ 1.43
USP39-202ENST00000409025 CSB-PGBD3P0DP91 1061 aa23.98■■□□□ 1.43
USP39-202ENST00000409025 TEFQ10587 303 aa23.98■■□□□ 1.43
USP39-202ENST00000409025 CHRNA2Q15822 529 aa23.98■■□□□ 1.43
USP39-202ENST00000409025 RAPGEF4Q8WZA2 1011 aa23.98■■□□□ 1.43
USP39-202ENST00000409025 STK31Q9BXU1 1019 aa23.98■■□□□ 1.43
USP39-202ENST00000409025 CCDC30Q5VVM6 783 aa23.97■■□□□ 1.43
USP39-202ENST00000409025 OVOS2A0A0G2JMS6 1433 aa23.97■■□□□ 1.43
USP39-202ENST00000409025 INTS3Q68E01 1043 aaKnown RBP23.96■■□□□ 1.43
USP39-202ENST00000409025 MPRIPQ6WCQ1 1025 aa23.96■■□□□ 1.43
USP39-202ENST00000409025 PDZRN3Q9UPQ7 1066 aa23.96■■□□□ 1.43
USP39-202ENST00000409025 RGS12O14924 1447 aa23.96■■□□□ 1.43
USP39-202ENST00000409025 RNMTO43148 476 aaKnown RBP23.96■■□□□ 1.43
USP39-202ENST00000409025 TATP17735 454 aaPredicted RBP23.94■■□□□ 1.42
USP39-202ENST00000409025 VIRMAQ69YN4 1812 aaKnown RBP23.94■■□□□ 1.42
USP39-202ENST00000409025 KDM3BQ7LBC6 1761 aa23.94■■□□□ 1.42
USP39-202ENST00000409025 FAM161AQ3B820 660 aa23.94■■□□□ 1.42
USP39-202ENST00000409025 NHSL1Q5SYE7 1610 aa23.93■■□□□ 1.42
USP39-202ENST00000409025 BTBD11A6QL63 1104 aa23.92■■□□□ 1.42
USP39-202ENST00000409025 PLEKHG2Q9H7P9 1386 aa23.92■■□□□ 1.42
USP39-202ENST00000409025 CACNA1FO60840 1977 aa23.91■■□□□ 1.42
USP39-202ENST00000409025 SMC5Q8IY18 1101 aa23.91■■□□□ 1.42
USP39-202ENST00000409025 SPG7Q9UQ90 795 aa23.91■■□□□ 1.42
USP39-202ENST00000409025 EIF4A1P60842 406 aaKnown RBP23.9■■□□□ 1.42
USP39-202ENST00000409025 G2E3Q7L622 706 aa23.9■■□□□ 1.42
USP39-202ENST00000409025 PRDM11Q9NQV5 511 aa23.9■■□□□ 1.42
USP39-202ENST00000409025 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.9■■□□□ 1.429e-7■□□□□ 10
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms