RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 NPC1L1Q9UHC9 1359 aa17.09■□□□□ 0.33
SMARCB1-203ENST00000407082 UTRNP46939 3433 aa17.09■□□□□ 0.33
SMARCB1-203ENST00000407082 AKAP12Q02952 1782 aa17.08■□□□□ 0.33
SMARCB1-203ENST00000407082 TTC21BQ7Z4L5 1316 aa17.07■□□□□ 0.32
SMARCB1-203ENST00000407082 CNGB1Q14028 1251 aaPredicted RBP17.07■□□□□ 0.32
SMARCB1-203ENST00000407082 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.07■□□□□ 0.327e-7■■□□□ 13.6
SMARCB1-203ENST00000407082 BCL9O00512 1426 aa17.06■□□□□ 0.32
SMARCB1-203ENST00000407082 POLD1P28340 1107 aa17.06■□□□□ 0.32
SMARCB1-203ENST00000407082 CARD14Q9BXL6 1004 aa17.06■□□□□ 0.32
SMARCB1-203ENST00000407082 EDC4Q6P2E9 1401 aaKnown RBP17.05■□□□□ 0.32
SMARCB1-203ENST00000407082 KAT6BQ8WYB5 2073 aa17.05■□□□□ 0.32
SMARCB1-203ENST00000407082 ZNF827Q17R98 1081 aa17.05■□□□□ 0.32
SMARCB1-203ENST00000407082 ARHGEF25Q86VW2 580 aa17.05■□□□□ 0.32
SMARCB1-203ENST00000407082 TTC21AQ8NDW8 1320 aa17.04■□□□□ 0.32
SMARCB1-203ENST00000407082 KCNH5Q8NCM2 988 aa17.04■□□□□ 0.32
SMARCB1-203ENST00000407082 MAP3K5Q99683 1374 aa17.03■□□□□ 0.32
SMARCB1-203ENST00000407082 TSHZ2Q9NRE2 1034 aa17.03■□□□□ 0.32
SMARCB1-203ENST00000407082 MON2Q7Z3U7 1717 aa17.03■□□□□ 0.32
SMARCB1-203ENST00000407082 NLRP2Q9NX02 1062 aa17.02■□□□□ 0.32
SMARCB1-203ENST00000407082 NSD3Q9BZ95 1437 aa17.02■□□□□ 0.31
SMARCB1-203ENST00000407082 SLIT3O75094 1523 aa17.01■□□□□ 0.31
SMARCB1-203ENST00000407082 CC2D1BQ5T0F9 858 aaKnown RBP17.01■□□□□ 0.31
SMARCB1-203ENST00000407082 NME9Q86XW9 330 aa17.01■□□□□ 0.31
SMARCB1-203ENST00000407082 NLGN2Q8NFZ4 835 aa17.01■□□□□ 0.31
SMARCB1-203ENST00000407082 LRRC4BQ9NT99 713 aa17.01■□□□□ 0.31
SMARCB1-203ENST00000407082 COL18A1P39060 1754 aa17.01■□□□□ 0.31
SMARCB1-203ENST00000407082 WNK3Q9BYP7 1800 aa17■□□□□ 0.31
SMARCB1-203ENST00000407082 RNF123Q5XPI4 1314 aa17■□□□□ 0.31
SMARCB1-203ENST00000407082 RGPD5Q99666 1765 aa17■□□□□ 0.31
SMARCB1-203ENST00000407082 TFCP2L1Q9NZI6 479 aa17■□□□□ 0.31
SMARCB1-203ENST00000407082 FYB1O15117 783 aa16.99■□□□□ 0.31
SMARCB1-203ENST00000407082 MSH5O43196 834 aa16.99■□□□□ 0.31
SMARCB1-203ENST00000407082 SLC16A10Q8TF71 515 aa16.99■□□□□ 0.31
SMARCB1-203ENST00000407082 CGNL1Q0VF96 1302 aa16.98■□□□□ 0.31
SMARCB1-203ENST00000407082 GRIN3BO60391 1043 aa16.98■□□□□ 0.31
SMARCB1-203ENST00000407082 KCNQ4P56696 695 aa16.98■□□□□ 0.31
SMARCB1-203ENST00000407082 TNS2Q63HR2 1409 aa16.97■□□□□ 0.31
SMARCB1-203ENST00000407082 WDR43Q15061 677 aaKnown RBP eCLIP16.97■□□□□ 0.31
SMARCB1-203ENST00000407082 NGEFQ8N5V2 710 aa16.97■□□□□ 0.31
SMARCB1-203ENST00000407082 AKT1S1Q96B36 256 aa16.97■□□□□ 0.31
SMARCB1-203ENST00000407082 GGNBP2Q9H3C7 697 aa16.97■□□□□ 0.31
SMARCB1-203ENST00000407082 IL2RBP14784 551 aa16.96■□□□□ 0.31
SMARCB1-203ENST00000407082 YBX3P16989 372 aaKnown RBP eCLIP16.96■□□□□ 0.313e-8■■■■□ 19.5
SMARCB1-203ENST00000407082 DDX54Q8TDD1 881 aaKnown RBP16.96■□□□□ 0.31
SMARCB1-203ENST00000407082 ZNF526Q8TF50 670 aaPredicted RBP16.96■□□□□ 0.31
SMARCB1-203ENST00000407082 SYTL4Q96C24 671 aaPredicted RBP16.96■□□□□ 0.31
SMARCB1-203ENST00000407082 COG3Q96JB2 828 aa16.96■□□□□ 0.31
SMARCB1-203ENST00000407082 PIK3C2AO00443 1686 aa16.96■□□□□ 0.31
SMARCB1-203ENST00000407082 NHSQ6T4R5 1651 aa16.95■□□□□ 0.3
SMARCB1-203ENST00000407082 USP31Q70CQ4 1352 aa16.95■□□□□ 0.3
SMARCB1-203ENST00000407082 AMER1Q5JTC6 1135 aaPredicted RBP16.95■□□□□ 0.3
SMARCB1-203ENST00000407082 GPBP1L1Q9HC44 474 aaPredicted RBP16.95■□□□□ 0.3
SMARCB1-203ENST00000407082 PNPLA7Q6ZV29 1317 aa16.95■□□□□ 0.3
SMARCB1-203ENST00000407082 PPP2R1AP30153 589 aa16.94■□□□□ 0.3
SMARCB1-203ENST00000407082 SLC27A3Q5K4L6 730 aa16.94■□□□□ 0.3
SMARCB1-203ENST00000407082 CEP350Q5VT06 3117 aa16.93■□□□□ 0.3
SMARCB1-203ENST00000407082 BTAF1O14981 1849 aa16.93■□□□□ 0.3
SMARCB1-203ENST00000407082 SHANK3Q9BYB0 1731 aa16.93■□□□□ 0.3
SMARCB1-203ENST00000407082 PAPPAQ13219 1627 aa16.92■□□□□ 0.3
SMARCB1-203ENST00000407082 ATP10DQ9P241 1426 aa16.92■□□□□ 0.3
SMARCB1-203ENST00000407082 IRX6P78412 446 aaPredicted RBP16.91■□□□□ 0.3
SMARCB1-203ENST00000407082 ANKRD24Q8TF21 1146 aa16.91■□□□□ 0.3
SMARCB1-203ENST00000407082 HSPA6P17066 643 aa16.9■□□□□ 0.3
SMARCB1-203ENST00000407082 MSL1Q68DK7 614 aa16.9■□□□□ 0.3
SMARCB1-203ENST00000407082 KIF20BQ96Q89 1820 aa16.9■□□□□ 0.3
SMARCB1-203ENST00000407082 NSD2O96028 1365 aa16.89■□□□□ 0.3
SMARCB1-203ENST00000407082 PRIM1P49642 420 aaKnown RBP16.89■□□□□ 0.29
SMARCB1-203ENST00000407082 MORC1Q86VD1 984 aa16.89■□□□□ 0.29
SMARCB1-203ENST00000407082 ABCC6O95255 1503 aa16.89■□□□□ 0.29
SMARCB1-203ENST00000407082 ERBB3P21860 1342 aa16.89■□□□□ 0.29
SMARCB1-203ENST00000407082 LTV1Q96GA3 475 aaPredicted RBP16.88■□□□□ 0.29
SMARCB1-203ENST00000407082 RCAN3Q9UKA8 241 aa16.88■□□□□ 0.29
SMARCB1-203ENST00000407082 FBLN1P23142 703 aa16.87■□□□□ 0.29
SMARCB1-203ENST00000407082 TNNT2P45379 298 aaPredicted RBP16.87■□□□□ 0.29
SMARCB1-203ENST00000407082 WWC3Q9ULE0 1092 aa16.87■□□□□ 0.29
SMARCB1-203ENST00000407082 USP54Q70EL1 1684 aa16.87■□□□□ 0.29
SMARCB1-203ENST00000407082 NFAT5O94916 1531 aa16.86■□□□□ 0.29
SMARCB1-203ENST00000407082 COL23A1Q86Y22 540 aaPredicted RBP16.86■□□□□ 0.29
SMARCB1-203ENST00000407082 CCNL1Q9UK58 526 aaPredicted RBP16.86■□□□□ 0.29
SMARCB1-203ENST00000407082 RRP1P56182 461 aaKnown RBP16.84■□□□□ 0.29
SMARCB1-203ENST00000407082 CCDC136Q96JN2 1154 aa16.84■□□□□ 0.29
SMARCB1-203ENST00000407082 GOLGB1Q14789 3259 aaKnown RBP16.83■□□□□ 0.28
SMARCB1-203ENST00000407082 RRS1Q15050 365 aaKnown RBP16.83■□□□□ 0.28
SMARCB1-203ENST00000407082 ADAMTS8Q9UP79 889 aa16.83■□□□□ 0.28
SMARCB1-203ENST00000407082 RBM19Q9Y4C8 960 aaKnown RBP16.82■□□□□ 0.28
SMARCB1-203ENST00000407082 ANKRD26Q9UPS8 1709 aa16.82■□□□□ 0.28
SMARCB1-203ENST00000407082 MAP3K19Q56UN5 1328 aa16.81■□□□□ 0.28
SMARCB1-203ENST00000407082 AMPHP49418 695 aa16.81■□□□□ 0.28
SMARCB1-203ENST00000407082 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.81■□□□□ 0.28
SMARCB1-203ENST00000407082 QSER1Q2KHR3 1735 aa16.81■□□□□ 0.28
SMARCB1-203ENST00000407082 TUBGCP6Q96RT7 1819 aa16.8■□□□□ 0.28
SMARCB1-203ENST00000407082 PPM1GO15355 546 aaPredicted RBP16.8■□□□□ 0.28
SMARCB1-203ENST00000407082 CFAP53Q96M91 514 aa16.8■□□□□ 0.28
SMARCB1-203ENST00000407082 CD2APQ9Y5K6 639 aa16.8■□□□□ 0.28
SMARCB1-203ENST00000407082 GOLGA2Q08379 1002 aa16.79■□□□□ 0.28
SMARCB1-203ENST00000407082 B4GALNT3Q6L9W6 998 aa16.79■□□□□ 0.28
SMARCB1-203ENST00000407082 POLKQ9UBT6 870 aa16.79■□□□□ 0.28
SMARCB1-203ENST00000407082 EMILIN1Q9Y6C2 1016 aa16.79■□□□□ 0.28
SMARCB1-203ENST00000407082 ZCRB1Q8TBF4 217 aaKnown RBP16.78■□□□□ 0.28
SMARCB1-203ENST00000407082 IP6K1Q92551 441 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 227.9 ms