RNA–Protein interactions for RNA: ENST00000401607.6

CPNE1-205, Transcript of copine 1, human

TSL 5

Gene CPNE1, Length 1,795 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-205	ENST00000401607	HTATSF1	O43719	755 aa	Known RBP	33.05	■■■□□ 2.88
CPNE1-205	ENST00000401607	SSH1	Q8WYL5	1049 aa		33.05	■■■□□ 2.88
CPNE1-205	ENST00000401607	FRAT1	Q92837	279 aa	Predicted RBP	33.05	■■■□□ 2.88
CPNE1-205	ENST00000401607	CANX	P27824	592 aa	Known RBP	33.04	■■■□□ 2.88
CPNE1-205	ENST00000401607	RTF1	Q92541	710 aa	Known RBP	33.04	■■■□□ 2.88
CPNE1-205	ENST00000401607	KIAA0232	Q92628	1395 aa		33.03	■■■□□ 2.88
CPNE1-205	ENST00000401607	MAP3K5	Q99683	1374 aa		33.03	■■■□□ 2.88
CPNE1-205	ENST00000401607	ABCA3	Q99758	1704 aa		33.03	■■■□□ 2.88
CPNE1-205	ENST00000401607	CHL1	O00533	1208 aa		33.03	■■■□□ 2.88
CPNE1-205	ENST00000401607	SMC4	Q9NTJ3	1288 aa		33.03	■■■□□ 2.88
CPNE1-205	ENST00000401607	GNAT3	A8MTJ3	354 aa		33.02	■■■□□ 2.88
CPNE1-205	ENST00000401607	TSPYL6	Q8N831	410 aa		33.01	■■■□□ 2.88
CPNE1-205	ENST00000401607	VAMP4	O75379	141 aa		33	■■■□□ 2.87
CPNE1-205	ENST00000401607	ZNF428	Q96B54	188 aa		33	■■■□□ 2.87
CPNE1-205	ENST00000401607	CHRNA2	Q15822	529 aa		32.99	■■■□□ 2.87
CPNE1-205	ENST00000401607	ALDH1L2	Q3SY69	923 aa		32.99	■■■□□ 2.87
CPNE1-205	ENST00000401607	ROBO1	Q9Y6N7	1651 aa		32.98	■■■□□ 2.87
CPNE1-205	ENST00000401607	C8orf58	Q8NAV2	365 aa		32.98	■■■□□ 2.87
CPNE1-205	ENST00000401607	PANK1	Q8TE04	598 aa		32.98	■■■□□ 2.87
CPNE1-205	ENST00000401607	TNN	Q9UQP3	1299 aa		32.98	■■■□□ 2.87
CPNE1-205	ENST00000401607	FAM208A	Q9UK61	1670 aa	Known RBP	32.97	■■■□□ 2.87
CPNE1-205	ENST00000401607	TWISTNB	Q3B726	338 aa	Predicted RBP	32.96	■■■□□ 2.87
CPNE1-205	ENST00000401607	IL17RE	Q8NFR9	667 aa		32.95	■■■□□ 2.87
CPNE1-205	ENST00000401607	ZKSCAN2	Q63HK3	967 aa		32.94	■■■□□ 2.86
CPNE1-205	ENST00000401607	RLBP1	P12271	317 aa		32.93	■■■□□ 2.86
CPNE1-205	ENST00000401607	ELL2	O00472	640 aa	Predicted RBP	32.93	■■■□□ 2.86
CPNE1-205	ENST00000401607	BRPF1	P55201	1214 aa	Predicted RBP	32.92	■■■□□ 2.86
CPNE1-205	ENST00000401607	PLEKHO1	Q53GL0	409 aa	Predicted RBP	32.92	■■■□□ 2.86
CPNE1-205	ENST00000401607	AHDC1	Q5TGY3	1603 aa	Predicted RBP	32.92	■■■□□ 2.86
CPNE1-205	ENST00000401607	AMOT	Q4VCS5	1084 aa		32.91	■■■□□ 2.86
CPNE1-205	ENST00000401607	COG6	Q9Y2V7	657 aa		32.91	■■■□□ 2.86
CPNE1-205	ENST00000401607	KIF16B	Q96L93	1317 aa		32.9	■■■□□ 2.86
CPNE1-205	ENST00000401607	NLRP2	Q9NX02	1062 aa		32.9	■■■□□ 2.86
CPNE1-205	ENST00000401607	MIS18A	Q9NYP9	233 aa		32.9	■■■□□ 2.86
CPNE1-205	ENST00000401607	NOB1	Q9ULX3	412 aa	Known RBP	32.9	■■■□□ 2.86
CPNE1-205	ENST00000401607	CEMIP	Q8WUJ3	1361 aa		32.89	■■■□□ 2.86
CPNE1-205	ENST00000401607	KRT24	Q2M2I5	525 aa		32.88	■■■□□ 2.85
CPNE1-205	ENST00000401607	PRDM11	Q9NQV5	511 aa		32.88	■■■□□ 2.85
CPNE1-205	ENST00000401607	TSPYL4	Q9UJ04	414 aa		32.88	■■■□□ 2.85
CPNE1-205	ENST00000401607	TRIM27	P14373	513 aa		32.88	■■■□□ 2.85
CPNE1-205	ENST00000401607	ZNF530	Q6P9A1	599 aa	Predicted RBP	32.88	■■■□□ 2.85
CPNE1-205	ENST00000401607	MRPL50	Q8N5N7	158 aa	Known RBP	32.88	■■■□□ 2.85
CPNE1-205	ENST00000401607	AKAP4	Q5JQC9	854 aa		32.87	■■■□□ 2.85
CPNE1-205	ENST00000401607	CLUAP1	Q96AJ1	413 aa		32.87	■■■□□ 2.85
CPNE1-205	ENST00000401607	CSB-PGBD3	P0DP91	1061 aa		32.86	■■■□□ 2.85
CPNE1-205	ENST00000401607	HAP1	P54257	671 aa	Predicted RBP	32.86	■■■□□ 2.85
CPNE1-205	ENST00000401607	ATF7IP	Q6VMQ6	1270 aa		32.86	■■■□□ 2.85
CPNE1-205	ENST00000401607	DZIP1L	Q8IYY4	767 aa	Known RBP	32.85	■■■□□ 2.85
CPNE1-205	ENST00000401607	MS4A1	P11836	297 aa		32.83	■■■□□ 2.85
CPNE1-205	ENST00000401607	MEGF6	O75095	1541 aa		32.83	■■■□□ 2.85
CPNE1-205	ENST00000401607	LGR6	Q9HBX8	967 aa		32.82	■■■□□ 2.84
CPNE1-205	ENST00000401607	BABAM1	Q9NWV8	329 aa		32.82	■■■□□ 2.84
CPNE1-205	ENST00000401607	COL5A2	P05997	1499 aa	Predicted RBP	32.82	■■■□□ 2.84
CPNE1-205	ENST00000401607	IPO8	O15397	1037 aa	Known RBP	32.81	■■■□□ 2.84
CPNE1-205	ENST00000401607	TAF7	Q15545	349 aa	Predicted RBP	32.81	■■■□□ 2.84
CPNE1-205	ENST00000401607	FTSJ3	Q8IY81	847 aa	Known RBP	32.81	■■■□□ 2.84
CPNE1-205	ENST00000401607	RAPGEF4	Q8WZA2	1011 aa		32.81	■■■□□ 2.84
CPNE1-205	ENST00000401607	TCERG1	O14776	1098 aa	Known RBP	32.81	■■■□□ 2.84
CPNE1-205	ENST00000401607	MVP	Q14764	893 aa	Known RBP	32.8	■■■□□ 2.84
CPNE1-205	ENST00000401607	C1orf141	Q5JVX7	400 aa		32.79	■■■□□ 2.84
CPNE1-205	ENST00000401607	VIRMA	Q69YN4	1812 aa	Known RBP	32.78	■■■□□ 2.84
CPNE1-205	ENST00000401607	OVOS2	A0A0G2JMS6	1433 aa		32.78	■■■□□ 2.84
CPNE1-205	ENST00000401607	PLEKHG2	Q9H7P9	1386 aa		32.78	■■■□□ 2.84
CPNE1-205	ENST00000401607	WDR17	Q8IZU2	1322 aa		32.78	■■■□□ 2.84
CPNE1-205	ENST00000401607	ADAMTS7	Q9UKP4	1686 aa		32.78	■■■□□ 2.84
CPNE1-205	ENST00000401607	COL22A1	Q8NFW1	1626 aa	Predicted RBP	32.78	■■■□□ 2.84
CPNE1-205	ENST00000401607	KDM2B	Q8NHM5	1336 aa		32.78	■■■□□ 2.84
CPNE1-205	ENST00000401607	TAT	P17735	454 aa	Predicted RBP	32.78	■■■□□ 2.84
CPNE1-205	ENST00000401607	MPRIP	Q6WCQ1	1025 aa		32.76	■■■□□ 2.84
CPNE1-205	ENST00000401607	ARHGAP45	Q92619	1136 aa		32.76	■■■□□ 2.84
CPNE1-205	ENST00000401607	RNMT	O43148	476 aa	Known RBP	32.75	■■■□□ 2.83
CPNE1-205	ENST00000401607	AAMP	Q13685	434 aa		32.75	■■■□□ 2.83
CPNE1-205	ENST00000401607	PKD1L3	Q7Z443	1732 aa		32.75	■■■□□ 2.83
CPNE1-205	ENST00000401607	KDM3B	Q7LBC6	1761 aa		32.74	■■■□□ 2.83
CPNE1-205	ENST00000401607	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	32.74	■■■□□ 2.83	1e-6	■■□□□ 12.2
CPNE1-205	ENST00000401607	TMEM57	Q8N5G2	664 aa		32.73	■■■□□ 2.83
CPNE1-205	ENST00000401607	TSHZ2	Q9NRE2	1034 aa		32.72	■■■□□ 2.83
CPNE1-205	ENST00000401607	COL16A1	Q07092	1604 aa	Predicted RBP	32.72	■■■□□ 2.83
CPNE1-205	ENST00000401607	PHLPP1	O60346	1717 aa		32.71	■■■□□ 2.83
CPNE1-205	ENST00000401607	SPG7	Q9UQ90	795 aa		32.7	■■■□□ 2.83
CPNE1-205	ENST00000401607	SIPA1L3	O60292	1781 aa	Predicted RBP	32.69	■■■□□ 2.82
CPNE1-205	ENST00000401607	TEF	Q10587	303 aa		32.69	■■■□□ 2.82
CPNE1-205	ENST00000401607	TOM1L2	Q6ZVM7	507 aa		32.69	■■■□□ 2.82
CPNE1-205	ENST00000401607	CENPQ	Q7L2Z9	268 aa	Predicted RBP	32.69	■■■□□ 2.82
CPNE1-205	ENST00000401607	ITPRIP	Q8IWB1	547 aa		32.68	■■■□□ 2.82
CPNE1-205	ENST00000401607	DDX19B	Q9UMR2	479 aa		32.68	■■■□□ 2.82
CPNE1-205	ENST00000401607	PARP4	Q9UKK3	1724 aa	Known RBP	32.67	■■■□□ 2.82
CPNE1-205	ENST00000401607	PHKG2	P15735	406 aa		32.67	■■■□□ 2.82
CPNE1-205	ENST00000401607	ABCC4	O15439	1325 aa		32.67	■■■□□ 2.82
CPNE1-205	ENST00000401607	KDM6A	O15550	1401 aa	Predicted RBP	32.66	■■■□□ 2.82
CPNE1-205	ENST00000401607	SOS1	Q07889	1333 aa	Predicted RBP	32.66	■■■□□ 2.82
CPNE1-205	ENST00000401607	SCN11A	Q9UI33	1791 aa		32.66	■■■□□ 2.82
CPNE1-205	ENST00000401607	COL14A1	Q05707	1796 aa	Known RBP	32.65	■■■□□ 2.82
CPNE1-205	ENST00000401607	TOM1	O60784	492 aa		32.65	■■■□□ 2.82
CPNE1-205	ENST00000401607	CARD10	Q9BWT7	1032 aa		32.65	■■■□□ 2.82
CPNE1-205	ENST00000401607	LARP1	Q6PKG0	1096 aa	Known RBP	32.64	■■■□□ 2.82
CPNE1-205	ENST00000401607	API5	Q9BZZ5	524 aa	Known RBP	32.64	■■■□□ 2.82
CPNE1-205	ENST00000401607	STRN4	Q9NRL3	753 aa		32.64	■■■□□ 2.82
CPNE1-205	ENST00000401607	PCDHB15	Q9Y5E8	787 aa		32.64	■■■□□ 2.82
CPNE1-205	ENST00000401607	RGS12	O14924	1447 aa		32.63	■■■□□ 2.81

Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms