RNA–Protein interactions for RNA: ENST00000400540.5

LINC00544-201, long intergenic non-protein coding RNA 544, humanhuman

TSL 5 BASIC

Gene LINC00544, Length 1,031 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00544-201ENST00000400540 ARXQ96QS3 562 aa16.84■□□□□ 0.29
LINC00544-201ENST00000400540 COG3Q96JB2 828 aa16.83■□□□□ 0.28
LINC00544-201ENST00000400540 TOGARAM1Q9Y4F4 1720 aa16.83■□□□□ 0.28
LINC00544-201ENST00000400540 ITGB4P16144 1822 aa16.82■□□□□ 0.28
LINC00544-201ENST00000400540 ANKRD36BQ8N2N9 1353 aa16.82■□□□□ 0.28
LINC00544-201ENST00000400540 SYTL4Q96C24 671 aaPredicted RBP16.82■□□□□ 0.28
LINC00544-201ENST00000400540 MAP3K5Q99683 1374 aa16.81■□□□□ 0.28
LINC00544-201ENST00000400540 PNPLA7Q6ZV29 1317 aa16.81■□□□□ 0.28
LINC00544-201ENST00000400540 AMPHP49418 695 aa16.81■□□□□ 0.28
LINC00544-201ENST00000400540 ZNF784Q8NCA9 323 aaPredicted RBP16.81■□□□□ 0.28
LINC00544-201ENST00000400540 RTL1A6NKG5 1358 aa16.8■□□□□ 0.28
LINC00544-201ENST00000400540 PRIM1P49642 420 aaKnown RBP16.8■□□□□ 0.28
LINC00544-201ENST00000400540 RRS1Q15050 365 aaKnown RBP16.8■□□□□ 0.28
LINC00544-201ENST00000400540 SLC27A3Q5K4L6 730 aa16.79■□□□□ 0.28
LINC00544-201ENST00000400540 USHBP1Q8N6Y0 703 aa16.79■□□□□ 0.28
LINC00544-201ENST00000400540 PKD1L3Q7Z443 1732 aa16.79■□□□□ 0.28
LINC00544-201ENST00000400540 KLHL34Q8N239 644 aa16.78■□□□□ 0.28
LINC00544-201ENST00000400540 ZCRB1Q8TBF4 217 aaKnown RBP16.78■□□□□ 0.28
LINC00544-201ENST00000400540 ANKRD26Q9UPS8 1709 aa16.78■□□□□ 0.28
LINC00544-201ENST00000400540 NBPF6Q5VWK0 638 aa16.77■□□□□ 0.28
LINC00544-201ENST00000400540 NBPF4Q96M43 638 aa16.77■□□□□ 0.28
LINC00544-201ENST00000400540 GGNBP2Q9H3C7 697 aa16.77■□□□□ 0.28
LINC00544-201ENST00000400540 TFCP2L1Q9NZI6 479 aa16.76■□□□□ 0.27
LINC00544-201ENST00000400540 USP47Q96K76 1375 aa16.76■□□□□ 0.27
LINC00544-201ENST00000400540 MAP2P11137 1827 aaKnown RBP16.75■□□□□ 0.27
LINC00544-201ENST00000400540 FYB1O15117 783 aa16.75■□□□□ 0.27
LINC00544-201ENST00000400540 SMG6Q86US8 1419 aaKnown RBP16.74■□□□□ 0.27
LINC00544-201ENST00000400540 SLC16A10Q8TF71 515 aa16.74■□□□□ 0.27
LINC00544-201ENST00000400540 CCNL1Q9UK58 526 aaPredicted RBP16.74■□□□□ 0.27
LINC00544-201ENST00000400540 UBR3Q6ZT12 1888 aa16.73■□□□□ 0.27
LINC00544-201ENST00000400540 POLD1P28340 1107 aa16.73■□□□□ 0.27
LINC00544-201ENST00000400540 GPR162Q16538 588 aa16.73■□□□□ 0.27
LINC00544-201ENST00000400540 NLGN2Q8NFZ4 835 aa16.73■□□□□ 0.27
LINC00544-201ENST00000400540 C4BP0C0L5 1744 aa16.73■□□□□ 0.27
LINC00544-201ENST00000400540 HSP90AB2PQ58FF8 381 aa16.72■□□□□ 0.27
LINC00544-201ENST00000400540 TMF1P82094 1093 aa16.71■□□□□ 0.27
LINC00544-201ENST00000400540 PELP1Q8IZL8 1130 aaKnown RBP16.71■□□□□ 0.27
LINC00544-201ENST00000400540 INSRP06213 1382 aa16.71■□□□□ 0.27
LINC00544-201ENST00000400540 FLT4P35916 1363 aa16.7■□□□□ 0.26
LINC00544-201ENST00000400540 COL23A1Q86Y22 540 aaPredicted RBP16.7■□□□□ 0.26
LINC00544-201ENST00000400540 RAPGEF4Q8WZA2 1011 aa16.7■□□□□ 0.26
LINC00544-201ENST00000400540 CGNL1Q0VF96 1302 aa16.7■□□□□ 0.26
LINC00544-201ENST00000400540 MSH5O43196 834 aa16.69■□□□□ 0.26
LINC00544-201ENST00000400540 SLC24A1O60721 1099 aa16.69■□□□□ 0.26
LINC00544-201ENST00000400540 TATP17735 454 aaPredicted RBP16.69■□□□□ 0.26
LINC00544-201ENST00000400540 MSL1Q68DK7 614 aa16.69■□□□□ 0.26
LINC00544-201ENST00000400540 NSD3Q9BZ95 1437 aa16.69■□□□□ 0.26
LINC00544-201ENST00000400540 PCDH11XQ9BZA7 1347 aa16.68■□□□□ 0.26
LINC00544-201ENST00000400540 PCDH11YQ9BZA8 1340 aa16.68■□□□□ 0.26
LINC00544-201ENST00000400540 PALLDQ8WX93 1383 aa16.67■□□□□ 0.26
LINC00544-201ENST00000400540 CYP27B1O15528 508 aa16.66■□□□□ 0.26
LINC00544-201ENST00000400540 NCAPD2Q15021 1401 aa16.66■□□□□ 0.26
LINC00544-201ENST00000400540 CARD14Q9BXL6 1004 aa16.66■□□□□ 0.26
LINC00544-201ENST00000400540 EMILIN1Q9Y6C2 1016 aa16.66■□□□□ 0.26
LINC00544-201ENST00000400540 KIF24Q5T7B8 1368 aa16.65■□□□□ 0.26
LINC00544-201ENST00000400540 YBX3P16989 372 aaKnown RBP eCLIP16.65■□□□□ 0.26
LINC00544-201ENST00000400540 C1QTNF8P60827 252 aa16.65■□□□□ 0.26
LINC00544-201ENST00000400540 MPRIPQ6WCQ1 1025 aa16.65■□□□□ 0.26
LINC00544-201ENST00000400540 CEP350Q5VT06 3117 aa16.65■□□□□ 0.26
LINC00544-201ENST00000400540 SENP3-EIF4A1A0A087X0R7 540 aa16.64■□□□□ 0.25
LINC00544-201ENST00000400540 AMIGO3Q86WK7 504 aa16.63■□□□□ 0.25
LINC00544-201ENST00000400540 PPM1GO15355 546 aaPredicted RBP16.61■□□□□ 0.25
LINC00544-201ENST00000400540 CDCA8Q53HL2 280 aa16.61■□□□□ 0.25
LINC00544-201ENST00000400540 SMIM5Q71RC9 77 aa16.61■□□□□ 0.25
LINC00544-201ENST00000400540 GIGYF1O75420 1035 aaPredicted RBP16.59■□□□□ 0.25
LINC00544-201ENST00000400540 PIGBQ92521 554 aa16.59■□□□□ 0.25
LINC00544-201ENST00000400540 COL5A3P25940 1745 aaPredicted RBP16.59■□□□□ 0.25
LINC00544-201ENST00000400540 KIAA1551Q9HCM1 1747 aa16.59■□□□□ 0.25
LINC00544-201ENST00000400540 PHF14O94880 888 aa16.58■□□□□ 0.24
LINC00544-201ENST00000400540 AK7Q96M32 723 aa16.58■□□□□ 0.24
LINC00544-201ENST00000400540 KIF13BQ9NQT8 1826 aa16.57■□□□□ 0.24
LINC00544-201ENST00000400540 N4BP2Q86UW6 1770 aaPredicted RBP16.57■□□□□ 0.24
LINC00544-201ENST00000400540 WASHC2AQ641Q2 1341 aa16.56■□□□□ 0.24
LINC00544-201ENST00000400540 GRIN3BO60391 1043 aa16.56■□□□□ 0.24
LINC00544-201ENST00000400540 NKX1-1Q15270 411 aaPredicted RBP16.56■□□□□ 0.24
LINC00544-201ENST00000400540 LINC00116Q8NCU8 138 aa16.56■□□□□ 0.24
LINC00544-201ENST00000400540 FLAD1Q8NFF5 587 aa16.56■□□□□ 0.24
LINC00544-201ENST00000400540 SMARCC1Q92922 1105 aaPredicted RBP16.56■□□□□ 0.24
LINC00544-201ENST00000400540 EYA1Q99502 592 aa16.56■□□□□ 0.24
LINC00544-201ENST00000400540 C4AP0C0L4 1744 aa16.56■□□□□ 0.24
LINC00544-201ENST00000400540 ZNF831Q5JPB2 1677 aa16.56■□□□□ 0.24
LINC00544-201ENST00000400540 ATP10DQ9P241 1426 aa16.55■□□□□ 0.24
LINC00544-201ENST00000400540 TRIM26Q12899 539 aaPredicted RBP16.55■□□□□ 0.24
LINC00544-201ENST00000400540 WWC3Q9ULE0 1092 aa16.55■□□□□ 0.24
LINC00544-201ENST00000400540 SPG7Q9UQ90 795 aa16.55■□□□□ 0.24
LINC00544-201ENST00000400540 CD2APQ9Y5K6 639 aa16.55■□□□□ 0.24
LINC00544-201ENST00000400540 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.54■□□□□ 0.24
LINC00544-201ENST00000400540 VIRMAQ69YN4 1812 aaKnown RBP16.54■□□□□ 0.24
LINC00544-201ENST00000400540 LOC102724428A0A0B4J2F2 783 aa16.53■□□□□ 0.24
LINC00544-201ENST00000400540 SIK1P57059 783 aa16.53■□□□□ 0.24
LINC00544-201ENST00000400540 ITPK1Q13572 414 aa16.53■□□□□ 0.24
LINC00544-201ENST00000400540 POLKQ9UBT6 870 aa16.53■□□□□ 0.24
LINC00544-201ENST00000400540 ASAP1Q9ULH1 1129 aa16.53■□□□□ 0.24
LINC00544-201ENST00000400540 BRCA1P38398 1863 aaKnown RBP16.52■□□□□ 0.24
LINC00544-201ENST00000400540 PHKG2P15735 406 aa16.52■□□□□ 0.24
LINC00544-201ENST00000400540 TNNT2P45379 298 aaPredicted RBP16.52■□□□□ 0.24
LINC00544-201ENST00000400540 POLR3GLQ9BT43 218 aa16.52■□□□□ 0.24
LINC00544-201ENST00000400540 TMOD3Q9NYL9 352 aa16.52■□□□□ 0.24
LINC00544-201ENST00000400540 ADCY9O60503 1353 aa16.51■□□□□ 0.23
LINC00544-201ENST00000400540 MYH14Q7Z406 1995 aaKnown RBP16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms