RNA–Protein interactions for RNA: ENST00000399306.6

CTNS-203, Transcript of cystinosin, lysosomal cystine transporter, humanhuman

TSL 3 BASIC

Gene CTNS, Length 803 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNS-203ENST00000399306 FAM196AQ6ZSG2 479 aa23.7■■□□□ 1.38
CTNS-203ENST00000399306 ZCRB1Q8TBF4 217 aaKnown RBP23.7■■□□□ 1.38
CTNS-203ENST00000399306 EP400Q96L91 3159 aa23.68■■□□□ 1.38
CTNS-203ENST00000399306 SOCS7O14512 581 aa23.68■■□□□ 1.38
CTNS-203ENST00000399306 ANP32CO43423 234 aa23.68■■□□□ 1.38
CTNS-203ENST00000399306 SULT6B1Q6IMI4 303 aa23.68■■□□□ 1.38
CTNS-203ENST00000399306 CCDC125Q86Z20 511 aa23.68■■□□□ 1.38
CTNS-203ENST00000399306 SHANK3Q9BYB0 1731 aa23.67■■□□□ 1.38
CTNS-203ENST00000399306 MARCH10Q8NA82 808 aaPredicted RBP23.67■■□□□ 1.38
CTNS-203ENST00000399306 SPG7Q9UQ90 795 aa23.67■■□□□ 1.38
CTNS-203ENST00000399306 PCDH11XQ9BZA7 1347 aa23.65■■□□□ 1.38
CTNS-203ENST00000399306 PCDH11YQ9BZA8 1340 aa23.65■■□□□ 1.38
CTNS-203ENST00000399306 AMOTQ4VCS5 1084 aa23.65■■□□□ 1.38
CTNS-203ENST00000399306 PLEKHO1Q53GL0 409 aaPredicted RBP23.63■■□□□ 1.37
CTNS-203ENST00000399306 AEBP1Q8IUX7 1158 aa23.63■■□□□ 1.37
CTNS-203ENST00000399306 SBF2Q86WG5 1849 aa23.62■■□□□ 1.37
CTNS-203ENST00000399306 U2SURPO15042 1029 aaKnown RBP23.62■■□□□ 1.37
CTNS-203ENST00000399306 FCHSD2O94868 740 aa23.62■■□□□ 1.37
CTNS-203ENST00000399306 UPF1Q92900 1129 aaKnown RBP eCLIP23.61■■□□□ 1.37
CTNS-203ENST00000399306 NKX1-1Q15270 411 aaPredicted RBP23.59■■□□□ 1.37
CTNS-203ENST00000399306 CYP27B1O15528 508 aa23.58■■□□□ 1.37
CTNS-203ENST00000399306 HMOX1P09601 288 aa23.58■■□□□ 1.37
CTNS-203ENST00000399306 U2AF1L5P0DN76 240 aaPredicted RBP23.58■■□□□ 1.37
CTNS-203ENST00000399306 U2AF1Q01081 240 aaKnown RBP eCLIP23.58■■□□□ 1.37
CTNS-203ENST00000399306 IFNL2Q8IZJ0 200 aa23.58■■□□□ 1.37
CTNS-203ENST00000399306 DDX54Q8TDD1 881 aaKnown RBP23.58■■□□□ 1.37
CTNS-203ENST00000399306 PNNQ9H307 717 aaKnown RBP23.58■■□□□ 1.37
CTNS-203ENST00000399306 FAM182BQ5T319 152 aa23.57■■□□□ 1.36
CTNS-203ENST00000399306 RSPH6AQ9H0K4 717 aa23.57■■□□□ 1.36
CTNS-203ENST00000399306 HSP90AB1P08238 724 aaKnown RBP23.56■■□□□ 1.36
CTNS-203ENST00000399306 NHSQ6T4R5 1651 aa23.55■■□□□ 1.36
CTNS-203ENST00000399306 PHKG2P15735 406 aa23.55■■□□□ 1.36
CTNS-203ENST00000399306 BCL11BQ9C0K0 894 aaPredicted RBP23.55■■□□□ 1.36
CTNS-203ENST00000399306 TNS1Q9HBL0 1735 aaKnown RBP23.54■■□□□ 1.36
CTNS-203ENST00000399306 KAT6BQ8WYB5 2073 aa23.53■■□□□ 1.36
CTNS-203ENST00000399306 SF3B2Q13435 895 aaKnown RBP23.53■■□□□ 1.36
CTNS-203ENST00000399306 PRKAR2BP31323 418 aa23.52■■□□□ 1.36
CTNS-203ENST00000399306 AKAP4Q5JQC9 854 aa23.52■■□□□ 1.36
CTNS-203ENST00000399306 ZNF530Q6P9A1 599 aaPredicted RBP23.52■■□□□ 1.36
CTNS-203ENST00000399306 GAS2L2Q8NHY3 880 aa23.52■■□□□ 1.36
CTNS-203ENST00000399306 C1orf141Q5JVX7 400 aa23.51■■□□□ 1.35
CTNS-203ENST00000399306 TRIM37O94972 964 aa23.5■■□□□ 1.35
CTNS-203ENST00000399306 WDR43Q15061 677 aaKnown RBP eCLIP23.5■■□□□ 1.35
CTNS-203ENST00000399306 DCAF5Q96JK2 942 aa23.5■■□□□ 1.35
CTNS-203ENST00000399306 DOT1LQ8TEK3 1739 aa23.5■■□□□ 1.35
CTNS-203ENST00000399306 RGPD3A6NKT7 1758 aaPredicted RBP23.5■■□□□ 1.35
CTNS-203ENST00000399306 RGPD4Q7Z3J3 1758 aa23.5■■□□□ 1.35
CTNS-203ENST00000399306 NEFMP07197 916 aa23.49■■□□□ 1.35
CTNS-203ENST00000399306 MTHFSDQ2M296 383 aaKnown RBP23.48■■□□□ 1.35
CTNS-203ENST00000399306 PLEKHF1Q96S99 279 aa23.48■■□□□ 1.35
CTNS-203ENST00000399306 ERVV-2B6SEH9 535 aa23.47■■□□□ 1.35
CTNS-203ENST00000399306 PLSCR1O15162 318 aa23.47■■□□□ 1.35
CTNS-203ENST00000399306 BAG6P46379 1132 aa23.47■■□□□ 1.35
CTNS-203ENST00000399306 ADAMTS7Q9UKP4 1686 aa23.47■■□□□ 1.35
CTNS-203ENST00000399306 ITGB4P16144 1822 aa23.45■■□□□ 1.34
CTNS-203ENST00000399306 SCN11AQ9UI33 1791 aa23.45■■□□□ 1.34
CTNS-203ENST00000399306 TOGARAM1Q9Y4F4 1720 aa23.45■■□□□ 1.34
CTNS-203ENST00000399306 DIEXFQ68CQ4 756 aaKnown RBP23.45■■□□□ 1.34
CTNS-203ENST00000399306 PHACTR3Q96KR7 559 aa23.45■■□□□ 1.34
CTNS-203ENST00000399306 BTAF1O14981 1849 aa23.44■■□□□ 1.34
CTNS-203ENST00000399306 MAP3K5Q99683 1374 aa23.43■■□□□ 1.34
CTNS-203ENST00000399306 KCNQ2O43526 872 aa23.43■■□□□ 1.34
CTNS-203ENST00000399306 HTATSF1O43719 755 aaKnown RBP23.43■■□□□ 1.34
CTNS-203ENST00000399306 APBA3O96018 575 aa23.43■■□□□ 1.34
CTNS-203ENST00000399306 PRIM1P49642 420 aaKnown RBP23.43■■□□□ 1.34
CTNS-203ENST00000399306 ACSBG1Q96GR2 724 aa23.43■■□□□ 1.34
CTNS-203ENST00000399306 MRS2Q9HD23 443 aa23.43■■□□□ 1.34
CTNS-203ENST00000399306 KDM6AO15550 1401 aaPredicted RBP23.42■■□□□ 1.34
CTNS-203ENST00000399306 MAPK8IP3Q9UPT6 1336 aa23.42■■□□□ 1.34
CTNS-203ENST00000399306 GNAT3A8MTJ3 354 aa23.42■■□□□ 1.34
CTNS-203ENST00000399306 PNISRQ8TF01 805 aaKnown RBP23.42■■□□□ 1.34
CTNS-203ENST00000399306 ADAMTS8Q9UP79 889 aa23.42■■□□□ 1.34
CTNS-203ENST00000399306 VIRMAQ69YN4 1812 aaKnown RBP23.41■■□□□ 1.34
CTNS-203ENST00000399306 CCER2I3L3R5 266 aa23.41■■□□□ 1.34
CTNS-203ENST00000399306 CCDC184Q52MB2 194 aa23.4■■□□□ 1.34
CTNS-203ENST00000399306 RUNDC1Q96C34 613 aa23.4■■□□□ 1.34
CTNS-203ENST00000399306 MRC1P22897 1456 aa23.4■■□□□ 1.34
CTNS-203ENST00000399306 CAMKK2Q96RR4 588 aa23.39■■□□□ 1.33
CTNS-203ENST00000399306 RNMTO43148 476 aaKnown RBP23.38■■□□□ 1.33
CTNS-203ENST00000399306 NFE2L2Q16236 605 aa23.38■■□□□ 1.33
CTNS-203ENST00000399306 PTF1AQ7RTS3 328 aa23.38■■□□□ 1.33
CTNS-203ENST00000399306 TMOD3Q9NYL9 352 aa23.38■■□□□ 1.33
CTNS-203ENST00000399306 HMGB2P26583 209 aaKnown RBP23.37■■□□□ 1.33
CTNS-203ENST00000399306 MPRIPQ6WCQ1 1025 aa23.37■■□□□ 1.33
CTNS-203ENST00000399306 SMARCC1Q92922 1105 aaPredicted RBP23.37■■□□□ 1.33
CTNS-203ENST00000399306 SYTL4Q96C24 671 aaPredicted RBP23.37■■□□□ 1.33
CTNS-203ENST00000399306 CEMIPQ8WUJ3 1361 aa23.37■■□□□ 1.33
CTNS-203ENST00000399306 DLG5Q8TDM6 1919 aa23.36■■□□□ 1.33
CTNS-203ENST00000399306 DEFB132Q7Z7B7 95 aa23.36■■□□□ 1.33
CTNS-203ENST00000399306 PIGBQ92521 554 aa23.36■■□□□ 1.33
CTNS-203ENST00000399306 RREB1Q92766 1687 aa23.35■■□□□ 1.33
CTNS-203ENST00000399306 CABP4P57796 275 aa23.35■■□□□ 1.33
CTNS-203ENST00000399306 LY75O60449 1722 aa23.34■■□□□ 1.33
CTNS-203ENST00000399306 EN1Q05925 392 aaPredicted RBP23.34■■□□□ 1.33
CTNS-203ENST00000399306 RTF1Q92541 710 aaKnown RBP23.34■■□□□ 1.33
CTNS-203ENST00000399306 SLC52A2Q9HAB3 445 aa23.34■■□□□ 1.33
CTNS-203ENST00000399306 IL17REQ8NFR9 667 aa23.33■■□□□ 1.33
CTNS-203ENST00000399306 LGR6Q9HBX8 967 aa23.33■■□□□ 1.33
CTNS-203ENST00000399306 TMPOP42166 694 aaKnown RBP23.32■■□□□ 1.32
CTNS-203ENST00000399306 LMOD3Q0VAK6 560 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms