RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 PCF11O94913 1555 aaKnown RBP6.44□□□□□ -1.38
VPS13C-204ENST00000395898 DDX54Q8TDD1 881 aaKnown RBP6.44□□□□□ -1.38
VPS13C-204ENST00000395898 RNF214Q8ND24 703 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 H0YHG0 523 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 FIBPO43427 364 aa6.44□□□□□ -1.38
VPS13C-204ENST00000395898 ZSCAN31Q96LW9 406 aaPredicted RBP6.44□□□□□ -1.38
VPS13C-204ENST00000395898 FMNL2Q96PY5 1086 aa6.43□□□□□ -1.38
VPS13C-204ENST00000395898 ZNF530Q6P9A1 599 aaPredicted RBP6.43□□□□□ -1.38
VPS13C-204ENST00000395898 LEKR1Q6ZMV7 388 aa6.43□□□□□ -1.38
VPS13C-204ENST00000395898 C1orf115Q9H7X2 142 aa6.43□□□□□ -1.38
VPS13C-204ENST00000395898 CEP126Q9P2H0 1117 aa6.43□□□□□ -1.38
VPS13C-204ENST00000395898 CFAP65Q6ZU64 1925 aaKnown RBP6.43□□□□□ -1.38
VPS13C-204ENST00000395898 FAM177BA6PVY3 158 aa6.43□□□□□ -1.38
VPS13C-204ENST00000395898 CIZ1Q9ULV3 898 aaPredicted RBP6.43□□□□□ -1.38
VPS13C-204ENST00000395898 AKNAQ7Z591 1439 aa6.43□□□□□ -1.38
VPS13C-204ENST00000395898 SMTNL1A8MU46 457 aa6.43□□□□□ -1.38
VPS13C-204ENST00000395898 TTLL5Q6EMB2 1281 aa6.43□□□□□ -1.38
VPS13C-204ENST00000395898 NKTRP30414 1462 aaKnown RBP6.43□□□□□ -1.38
VPS13C-204ENST00000395898 BCAR3O75815 825 aa6.43□□□□□ -1.38
VPS13C-204ENST00000395898 ATP2B2Q01814 1243 aa6.43□□□□□ -1.38
VPS13C-204ENST00000395898 NBPF1Q3BBV0 1214 aa6.43□□□□□ -1.38
VPS13C-204ENST00000395898 CCDC181Q5TID7 509 aa6.43□□□□□ -1.38
VPS13C-204ENST00000395898 UBAC1Q9BSL1 405 aa6.43□□□□□ -1.38
VPS13C-204ENST00000395898 SEPT7Q16181 437 aaKnown RBP6.43□□□□□ -1.38
VPS13C-204ENST00000395898 CEP57L1Q8IYX8 460 aa6.43□□□□□ -1.38
VPS13C-204ENST00000395898 SIL1Q9H173 461 aa6.43□□□□□ -1.38
VPS13C-204ENST00000395898 CEBPZQ03701 1054 aaKnown RBP6.43□□□□□ -1.38
VPS13C-204ENST00000395898 U3KPZ7 1027 aaPredicted RBP6.43□□□□□ -1.38
VPS13C-204ENST00000395898 UNC13AQ9UPW8 1703 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 ATP2B1P20020 1258 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 IGHMBP2P38935 993 aaKnown RBP6.42□□□□□ -1.38
VPS13C-204ENST00000395898 TDO2P48775 406 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 AACSQ86V21 672 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 VSIG10Q8N0Z9 540 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 KIF1BPQ96EK5 621 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 ZNF397Q8NF99 534 aaPredicted RBP6.42□□□□□ -1.38
VPS13C-204ENST00000395898 TSR2Q969E8 191 aaKnown RBP6.42□□□□□ -1.38
VPS13C-204ENST00000395898 CCDC196A0A1B0GTZ2 297 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 NFE2L2Q16236 605 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 BACH2Q9BYV9 841 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 NESP48681 1621 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 IMMTQ16891 758 aaKnown RBP6.42□□□□□ -1.38
VPS13C-204ENST00000395898 NSD3Q9BZ95 1437 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 EIF3JO75822 258 aaKnown RBP6.42□□□□□ -1.38
VPS13C-204ENST00000395898 HMGB1P09429 215 aaKnown RBP6.42□□□□□ -1.38
VPS13C-204ENST00000395898 AMOTQ4VCS5 1084 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 DNAI2Q9GZS0 605 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 LRP2BPQ9P2M1 347 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 PPP6R1Q9UPN7 881 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 MAGI1Q96QZ7 1491 aaPredicted RBP6.42□□□□□ -1.38
VPS13C-204ENST00000395898 SPATA32Q96LK8 384 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 MAP3K1Q13233 1512 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 KIAA0586Q9BVV6 1533 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 ALDH1L2Q3SY69 923 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 PDCL3Q9H2J4 239 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 PRDM11Q9NQV5 511 aa6.42□□□□□ -1.38
VPS13C-204ENST00000395898 GLRX3O76003 335 aaKnown RBP6.41□□□□□ -1.38
VPS13C-204ENST00000395898 NEFHP12036 1026 aa6.41□□□□□ -1.38
VPS13C-204ENST00000395898 CWC27Q6UX04 472 aaKnown RBP6.41□□□□□ -1.38
VPS13C-204ENST00000395898 IL27Q8NEV9 243 aa6.41□□□□□ -1.38
VPS13C-204ENST00000395898 PLEKHH1Q9ULM0 1364 aa6.41□□□□□ -1.38
VPS13C-204ENST00000395898 RBM5P52756 815 aaKnown RBP eCLIP6.41□□□□□ -1.38
VPS13C-204ENST00000395898 TANGO6Q9C0B7 1094 aa6.41□□□□□ -1.38
VPS13C-204ENST00000395898 CAMSAP2Q08AD1 1489 aa6.41□□□□□ -1.38
VPS13C-204ENST00000395898 PPP1R12BO60237 982 aaPredicted RBP6.41□□□□□ -1.38
VPS13C-204ENST00000395898 TMPOP42166 694 aaKnown RBP6.41□□□□□ -1.38
VPS13C-204ENST00000395898 GOLGA6L7A0A1B0GV03 622 aa6.41□□□□□ -1.38
VPS13C-204ENST00000395898 ERLIN1O75477 346 aa6.41□□□□□ -1.38
VPS13C-204ENST00000395898 PAF1Q8N7H5 531 aa6.41□□□□□ -1.38
VPS13C-204ENST00000395898 PDRG1Q9NUG6 133 aa6.41□□□□□ -1.38
VPS13C-204ENST00000395898 ABCC11Q96J66 1382 aa6.41□□□□□ -1.38
VPS13C-204ENST00000395898 STK3Q13188 491 aa6.41□□□□□ -1.38
VPS13C-204ENST00000395898 CAVIN4Q5BKX8 364 aa6.41□□□□□ -1.38
VPS13C-204ENST00000395898 LARP1Q6PKG0 1096 aaKnown RBP6.41□□□□□ -1.38
VPS13C-204ENST00000395898 SPC24Q8NBT2 197 aa6.41□□□□□ -1.38
VPS13C-204ENST00000395898 NUP133Q8WUM0 1156 aa6.41□□□□□ -1.38
VPS13C-204ENST00000395898 ZSCAN29Q8IWY8 852 aaPredicted RBP6.4□□□□□ -1.38
VPS13C-204ENST00000395898 AXDND1Q5T1B0 1012 aaPredicted RBP6.4□□□□□ -1.38
VPS13C-204ENST00000395898 AIDAQ96BJ3 306 aa6.4□□□□□ -1.38
VPS13C-204ENST00000395898 NUDT16Q96DE0 195 aaKnown RBP6.4□□□□□ -1.38
VPS13C-204ENST00000395898 ARHGEF11O15085 1522 aa6.4□□□□□ -1.38
VPS13C-204ENST00000395898 CDK13Q14004 1512 aaKnown RBP6.4□□□□□ -1.38
VPS13C-204ENST00000395898 NUP62CLQ9H1M0 184 aa6.4□□□□□ -1.39
VPS13C-204ENST00000395898 SEC63Q9UGP8 760 aaKnown RBP6.4□□□□□ -1.39
VPS13C-204ENST00000395898 RRS1Q15050 365 aaKnown RBP6.4□□□□□ -1.39
VPS13C-204ENST00000395898 ZHX3Q9H4I2 956 aa6.4□□□□□ -1.39
VPS13C-204ENST00000395898 PTPRCP08575 1304 aa6.4□□□□□ -1.39
VPS13C-204ENST00000395898 GBP2P32456 591 aaPredicted RBP6.4□□□□□ -1.39
VPS13C-204ENST00000395898 RAB34Q9BZG1 259 aa6.4□□□□□ -1.39
VPS13C-204ENST00000395898 HSP90AB3PQ58FF7 597 aa6.39□□□□□ -1.39
VPS13C-204ENST00000395898 CASTP20810 708 aaKnown RBP6.39□□□□□ -1.39
VPS13C-204ENST00000395898 JAKMIP1Q96N16 626 aaKnown RBP6.39□□□□□ -1.39
VPS13C-204ENST00000395898 KDM4AO75164 1064 aa6.39□□□□□ -1.39
VPS13C-204ENST00000395898 TNIP1Q15025 636 aa6.39□□□□□ -1.39
VPS13C-204ENST00000395898 ZNF76P36508 570 aa6.39□□□□□ -1.39
VPS13C-204ENST00000395898 UPF3BQ9BZI7 483 aaKnown RBP6.39□□□□□ -1.39
VPS13C-204ENST00000395898 SLFN5Q08AF3 891 aa6.39□□□□□ -1.39
VPS13C-204ENST00000395898 GRPEL1Q9HAV7 217 aa6.39□□□□□ -1.39
VPS13C-204ENST00000395898 LRPPRCP42704 1394 aaKnown RBP6.39□□□□□ -1.39
VPS13C-204ENST00000395898 CALRP27797 417 aaKnown RBP6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms