RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 EIF4A2Q14240 407 aaKnown RBP32.25■■■□□ 2.75
SHMT1-204ENST00000395682 EYA1Q99502 592 aa32.25■■■□□ 2.75
SHMT1-204ENST00000395682 PLSCR1O15162 318 aa32.23■■■□□ 2.75
SHMT1-204ENST00000395682 CNGB1Q14028 1251 aaPredicted RBP32.2■■■□□ 2.75
SHMT1-204ENST00000395682 NPC1L1Q9UHC9 1359 aa32.16■■■□□ 2.74
SHMT1-204ENST00000395682 NCAPD2Q15021 1401 aa32.16■■■□□ 2.74
SHMT1-204ENST00000395682 KAT6BQ8WYB5 2073 aa32.15■■■□□ 2.74
SHMT1-204ENST00000395682 PSDA5PKW4 1024 aaPredicted RBP32.15■■■□□ 2.74
SHMT1-204ENST00000395682 MTHFSP49914 203 aa32.14■■■□□ 2.74
SHMT1-204ENST00000395682 PCDH11XQ9BZA7 1347 aa32.12■■■□□ 2.73
SHMT1-204ENST00000395682 PCDH11YQ9BZA8 1340 aa32.12■■■□□ 2.73
SHMT1-204ENST00000395682 R3HDM1Q15032 1099 aaKnown RBP32.12■■■□□ 2.73
SHMT1-204ENST00000395682 PROM2Q8N271 834 aa32.12■■■□□ 2.73
SHMT1-204ENST00000395682 IGSF1Q8N6C5 1336 aa32.11■■■□□ 2.73
SHMT1-204ENST00000395682 PRIM1P49642 420 aaKnown RBP32.11■■■□□ 2.73
SHMT1-204ENST00000395682 NBPF14Q5TI25 921 aa32.11■■■□□ 2.73
SHMT1-204ENST00000395682 SYTL4Q96C24 671 aaPredicted RBP32.11■■■□□ 2.73
SHMT1-204ENST00000395682 SPG7Q9UQ90 795 aa32.11■■■□□ 2.73
SHMT1-204ENST00000395682 NHSQ6T4R5 1651 aa32.11■■■□□ 2.73
SHMT1-204ENST00000395682 SHANK3Q9BYB0 1731 aa32.1■■■□□ 2.73
SHMT1-204ENST00000395682 CYP27B1O15528 508 aa32.09■■■□□ 2.73
SHMT1-204ENST00000395682 RREB1Q92766 1687 aa32.08■■■□□ 2.73
SHMT1-204ENST00000395682 TXNRD1Q16881 649 aa32.08■■■□□ 2.73
SHMT1-204ENST00000395682 IL13P35225 146 aa32.07■■■□□ 2.72
SHMT1-204ENST00000395682 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP32.07■■■□□ 2.72
SHMT1-204ENST00000395682 RGPD3A6NKT7 1758 aaPredicted RBP32.04■■■□□ 2.72
SHMT1-204ENST00000395682 RGPD4Q7Z3J3 1758 aa32.04■■■□□ 2.72
SHMT1-204ENST00000395682 NUP188Q5SRE5 1749 aa32.04■■■□□ 2.72
SHMT1-204ENST00000395682 AEBP1Q8IUX7 1158 aa32.02■■■□□ 2.72
SHMT1-204ENST00000395682 BTAF1O14981 1849 aa32.01■■■□□ 2.72
SHMT1-204ENST00000395682 SULT6B1Q6IMI4 303 aa32.01■■■□□ 2.71
SHMT1-204ENST00000395682 NKX1-1Q15270 411 aaPredicted RBP32■■■□□ 2.71
SHMT1-204ENST00000395682 PKD1L3Q7Z443 1732 aa32■■■□□ 2.71
SHMT1-204ENST00000395682 DOT1LQ8TEK3 1739 aa31.98■■■□□ 2.71
SHMT1-204ENST00000395682 DIAPH1O60610 1272 aaKnown RBP31.98■■■□□ 2.71
SHMT1-204ENST00000395682 ZEB1P37275 1124 aaPredicted RBP31.98■■■□□ 2.71
SHMT1-204ENST00000395682 PLEKHO1Q53GL0 409 aaPredicted RBP31.98■■■□□ 2.71
SHMT1-204ENST00000395682 IFNL2Q8IZJ0 200 aa31.98■■■□□ 2.71
SHMT1-204ENST00000395682 PHKG2P15735 406 aa31.96■■■□□ 2.71
SHMT1-204ENST00000395682 SRCAPQ6ZRS2 3230 aa31.96■■■□□ 2.71
SHMT1-204ENST00000395682 ANO8Q9HCE9 1232 aaPredicted RBP31.96■■■□□ 2.71
SHMT1-204ENST00000395682 PLEKHG2Q9H7P9 1386 aa31.95■■■□□ 2.71
SHMT1-204ENST00000395682 MPRIPQ6WCQ1 1025 aa31.95■■■□□ 2.71
SHMT1-204ENST00000395682 AMOTQ4VCS5 1084 aa31.94■■■□□ 2.7
SHMT1-204ENST00000395682 KDRP35968 1356 aa31.93■■■□□ 2.7
SHMT1-204ENST00000395682 STK32BQ9NY57 414 aa31.92■■■□□ 2.7
SHMT1-204ENST00000395682 LRRC4BQ9NT99 713 aa31.91■■■□□ 2.7
SHMT1-204ENST00000395682 HMOX1P09601 288 aa31.9■■■□□ 2.7
SHMT1-204ENST00000395682 PPP2R1AP30153 589 aa31.9■■■□□ 2.7
SHMT1-204ENST00000395682 SLC27A3Q5K4L6 730 aa31.9■■■□□ 2.7
SHMT1-204ENST00000395682 ZNF530Q6P9A1 599 aaPredicted RBP31.9■■■□□ 2.7
SHMT1-204ENST00000395682 SLC15A2Q16348 729 aa31.88■■■□□ 2.69
SHMT1-204ENST00000395682 KCNQ4P56696 695 aa31.87■■■□□ 2.69
SHMT1-204ENST00000395682 DDX10Q13206 875 aaKnown RBP31.87■■■□□ 2.69
SHMT1-204ENST00000395682 PIGBQ92521 554 aa31.87■■■□□ 2.69
SHMT1-204ENST00000395682 CFAP53Q96M91 514 aa31.87■■■□□ 2.69
SHMT1-204ENST00000395682 HSP90AB1P08238 724 aaKnown RBP31.86■■■□□ 2.69
SHMT1-204ENST00000395682 COL3A1P02461 1466 aaPredicted RBP31.85■■■□□ 2.69
SHMT1-204ENST00000395682 U2SURPO15042 1029 aaKnown RBP31.85■■■□□ 2.69
SHMT1-204ENST00000395682 TMOD3Q9NYL9 352 aa31.85■■■□□ 2.69
SHMT1-204ENST00000395682 TOGARAM1Q9Y4F4 1720 aa31.84■■■□□ 2.69
SHMT1-204ENST00000395682 C1orf141Q5JVX7 400 aa31.84■■■□□ 2.69
SHMT1-204ENST00000395682 DCAF5Q96JK2 942 aa31.84■■■□□ 2.69
SHMT1-204ENST00000395682 CCNL1Q9UK58 526 aaPredicted RBP31.84■■■□□ 2.69
SHMT1-204ENST00000395682 SMARCC1Q92922 1105 aaPredicted RBP31.82■■■□□ 2.68
SHMT1-204ENST00000395682 ITGB4P16144 1822 aa31.81■■■□□ 2.68
SHMT1-204ENST00000395682 ERVV-2B6SEH9 535 aa31.8■■■□□ 2.68
SHMT1-204ENST00000395682 PDGFDQ9GZP0 370 aaPredicted RBP31.8■■■□□ 2.68
SHMT1-204ENST00000395682 ZNF827Q17R98 1081 aa31.79■■■□□ 2.68
SHMT1-204ENST00000395682 PALLDQ8WX93 1383 aa31.79■■■□□ 2.68
SHMT1-204ENST00000395682 AKT1S1Q96B36 256 aa31.78■■■□□ 2.68
SHMT1-204ENST00000395682 NUDCQ9Y266 331 aa31.77■■■□□ 2.68
SHMT1-204ENST00000395682 LY75O60449 1722 aa31.77■■■□□ 2.68
SHMT1-204ENST00000395682 PAPPAQ13219 1627 aa31.76■■■□□ 2.67
SHMT1-204ENST00000395682 ASAP1Q9ULH1 1129 aa31.76■■■□□ 2.67
SHMT1-204ENST00000395682 LRP5O75197 1615 aa31.75■■■□□ 2.67
SHMT1-204ENST00000395682 CABP4P57796 275 aa31.75■■■□□ 2.67
SHMT1-204ENST00000395682 AKAP4Q5JQC9 854 aa31.75■■■□□ 2.67
SHMT1-204ENST00000395682 MTHFSDQ2M296 383 aaKnown RBP31.74■■■□□ 2.67
SHMT1-204ENST00000395682 SPON1Q9HCB6 807 aa31.74■■■□□ 2.67
SHMT1-204ENST00000395682 KDM6AO15550 1401 aaPredicted RBP31.74■■■□□ 2.67
SHMT1-204ENST00000395682 ATG3Q9NT62 314 aa31.72■■■□□ 2.67
SHMT1-204ENST00000395682 TFCP2L1Q9NZI6 479 aa31.72■■■□□ 2.67
SHMT1-204ENST00000395682 ZBTB7AO95365 584 aa31.71■■■□□ 2.67
SHMT1-204ENST00000395682 HMGB2P26583 209 aaKnown RBP31.7■■■□□ 2.67
SHMT1-204ENST00000395682 RALBP1Q15311 655 aa31.7■■■□□ 2.67
SHMT1-204ENST00000395682 U2AF1L5P0DN76 240 aaPredicted RBP31.69■■■□□ 2.66
SHMT1-204ENST00000395682 U2AF1Q01081 240 aaKnown RBP eCLIP31.69■■■□□ 2.66
SHMT1-204ENST00000395682 NFATC2IPQ8NCF5 419 aa31.69■■■□□ 2.66
SHMT1-204ENST00000395682 LOC102724428A0A0B4J2F2 783 aa31.68■■■□□ 2.66
SHMT1-204ENST00000395682 SIK1P57059 783 aa31.68■■■□□ 2.66
SHMT1-204ENST00000395682 LGR6Q9HBX8 967 aa31.68■■■□□ 2.66
SHMT1-204ENST00000395682 CASZ1Q86V15 1759 aa31.68■■■□□ 2.66
SHMT1-204ENST00000395682 ATF5Q9Y2D1 282 aaPredicted RBP31.67■■■□□ 2.66
SHMT1-204ENST00000395682 PRKAR2BP31323 418 aa31.66■■■□□ 2.66
SHMT1-204ENST00000395682 RSPH6AQ9H0K4 717 aa31.66■■■□□ 2.66
SHMT1-204ENST00000395682 RNMTO43148 476 aaKnown RBP31.64■■■□□ 2.66
SHMT1-204ENST00000395682 PHACTR3Q96KR7 559 aa31.64■■■□□ 2.66
SHMT1-204ENST00000395682 PNPLA7Q6ZV29 1317 aa31.64■■■□□ 2.66
SHMT1-204ENST00000395682 FCHSD2O94868 740 aa31.63■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms