RNA–Protein interactions for RNA: ENST00000395354.1

LMNB1-202, Transcript of lamin B1, humanhuman

TSL 1 (best) BASIC

Gene LMNB1, Length 1,572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-202ENST00000395354 TRPC5Q9UL62 973 aaPredicted RBP25.21■■□□□ 1.63
LMNB1-202ENST00000395354 SPATA31A5Q5VU36 1347 aa25.21■■□□□ 1.63
LMNB1-202ENST00000395354 SPATA31A7Q8IWB4 1347 aa25.21■■□□□ 1.63
LMNB1-202ENST00000395354 RGPD1P0DJD0 1748 aa25.2■■□□□ 1.63
LMNB1-202ENST00000395354 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.2■■□□□ 1.63
LMNB1-202ENST00000395354 FCHSD2O94868 740 aa25.2■■□□□ 1.62
LMNB1-202ENST00000395354 AEBP1Q8IUX7 1158 aa25.2■■□□□ 1.62
LMNB1-202ENST00000395354 SPATA31A1Q5TZJ5 1347 aa25.2■■□□□ 1.62
LMNB1-202ENST00000395354 WDR63Q8IWG1 891 aa25.19■■□□□ 1.62
LMNB1-202ENST00000395354 IRX6P78412 446 aaPredicted RBP25.18■■□□□ 1.62
LMNB1-202ENST00000395354 PELP1Q8IZL8 1130 aaKnown RBP25.18■■□□□ 1.62
LMNB1-202ENST00000395354 GJD4Q96KN9 370 aaPredicted RBP25.17■■□□□ 1.62
LMNB1-202ENST00000395354 ATRNO75882 1429 aa25.16■■□□□ 1.62
LMNB1-202ENST00000395354 KDRP35968 1356 aa25.16■■□□□ 1.62
LMNB1-202ENST00000395354 MAPK8IP3Q9UPT6 1336 aa25.16■■□□□ 1.62
LMNB1-202ENST00000395354 RRP1P56182 461 aaKnown RBP25.16■■□□□ 1.62
LMNB1-202ENST00000395354 PPP4R2Q9NY27 417 aa25.16■■□□□ 1.62
LMNB1-202ENST00000395354 THRAP3Q9Y2W1 955 aaKnown RBP25.16■■□□□ 1.62
LMNB1-202ENST00000395354 NCAPD2Q15021 1401 aa25.16■■□□□ 1.62
LMNB1-202ENST00000395354 RSPH6AQ9H0K4 717 aa25.15■■□□□ 1.62
LMNB1-202ENST00000395354 RGS17Q9UGC6 210 aaPredicted RBP25.15■■□□□ 1.62
LMNB1-202ENST00000395354 RAPGEF4Q8WZA2 1011 aa25.14■■□□□ 1.62
LMNB1-202ENST00000395354 PRKAR2BP31323 418 aa25.14■■□□□ 1.61
LMNB1-202ENST00000395354 IL2RBP14784 551 aa25.12■■□□□ 1.61
LMNB1-202ENST00000395354 TATP17735 454 aaPredicted RBP25.11■■□□□ 1.61
LMNB1-202ENST00000395354 TMPOP42166 694 aaKnown RBP25.11■■□□□ 1.61
LMNB1-202ENST00000395354 BARGINQ6ZT62 677 aa25.11■■□□□ 1.61
LMNB1-202ENST00000395354 RRP7AQ9Y3A4 280 aaKnown RBP25.11■■□□□ 1.61
LMNB1-202ENST00000395354 NEFMP07197 916 aa25.1■■□□□ 1.61
LMNB1-202ENST00000395354 SPINK5Q9NQ38 1064 aaPredicted RBP25.1■■□□□ 1.61
LMNB1-202ENST00000395354 NEUROD2Q15784 382 aa25.1■■□□□ 1.61
LMNB1-202ENST00000395354 FAM98CQ17RN3 349 aaKnown RBP25.1■■□□□ 1.61
LMNB1-202ENST00000395354 CDCA7Q9BWT1 371 aaPredicted RBP25.09■■□□□ 1.61
LMNB1-202ENST00000395354 RBM6P78332 1123 aaKnown RBP25.08■■□□□ 1.61
LMNB1-202ENST00000395354 PHACTR3Q96KR7 559 aa25.08■■□□□ 1.61
LMNB1-202ENST00000395354 MEGF6O75095 1541 aa25.07■■□□□ 1.6
LMNB1-202ENST00000395354 GLI3P10071 1580 aa25.07■■□□□ 1.6
LMNB1-202ENST00000395354 POTEAQ6S8J7 498 aa25.06■■□□□ 1.6
LMNB1-202ENST00000395354 PLEKHO1Q53GL0 409 aaPredicted RBP25.05■■□□□ 1.6
LMNB1-202ENST00000395354 DISP2A7MBM2 1401 aa25.05■■□□□ 1.6
LMNB1-202ENST00000395354 IL16Q14005 1332 aa25.05■■□□□ 1.6
LMNB1-202ENST00000395354 ONECUT3O60422 494 aaPredicted RBP25.05■■□□□ 1.6
LMNB1-202ENST00000395354 RXRBP28702 533 aa25.05■■□□□ 1.6
LMNB1-202ENST00000395354 MYH16Q9H6N6 1097 aa25.05■■□□□ 1.6
LMNB1-202ENST00000395354 AMOTQ4VCS5 1084 aa25.04■■□□□ 1.6
LMNB1-202ENST00000395354 ZCRB1Q8TBF4 217 aaKnown RBP25.04■■□□□ 1.6
LMNB1-202ENST00000395354 A0A0G2JS52 829 aa25.03■■□□□ 1.6
LMNB1-202ENST00000395354 EXOC5O00471 708 aa25.03■■□□□ 1.6
LMNB1-202ENST00000395354 MYT1Q01538 1121 aa25.03■■□□□ 1.6
LMNB1-202ENST00000395354 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.03■■□□□ 1.63e-6■■■■□ 20
LMNB1-202ENST00000395354 TRIM35Q9UPQ4 493 aa25.03■■□□□ 1.6
LMNB1-202ENST00000395354 SPG7Q9UQ90 795 aa25.03■■□□□ 1.6
LMNB1-202ENST00000395354 OVOS2A0A0G2JMS6 1433 aa25.02■■□□□ 1.6
LMNB1-202ENST00000395354 RIPK4P57078 832 aa25.01■■□□□ 1.59
LMNB1-202ENST00000395354 MTHFSDQ2M296 383 aaKnown RBP25.01■■□□□ 1.59
LMNB1-202ENST00000395354 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.01■■□□□ 1.59
LMNB1-202ENST00000395354 NFE2L2Q16236 605 aa25.01■■□□□ 1.59
LMNB1-202ENST00000395354 DDB1Q16531 1140 aa25.01■■□□□ 1.59
LMNB1-202ENST00000395354 PARP4Q9UKK3 1724 aaKnown RBP25■■□□□ 1.59
LMNB1-202ENST00000395354 PLEKHG2Q9H7P9 1386 aa25■■□□□ 1.59
LMNB1-202ENST00000395354 SEPT12Q8IYM1 358 aa25■■□□□ 1.59
LMNB1-202ENST00000395354 WNK3Q9BYP7 1800 aa25■■□□□ 1.59
LMNB1-202ENST00000395354 GAS2L2Q8NHY3 880 aa24.98■■□□□ 1.59
LMNB1-202ENST00000395354 ZNF530Q6P9A1 599 aaPredicted RBP24.97■■□□□ 1.59
LMNB1-202ENST00000395354 DDX54Q8TDD1 881 aaKnown RBP24.97■■□□□ 1.59
LMNB1-202ENST00000395354 CT47B1P0C2W7 299 aaPredicted RBP24.96■■□□□ 1.59
LMNB1-202ENST00000395354 THSD7AQ9UPZ6 1657 aa24.95■■□□□ 1.58
LMNB1-202ENST00000395354 CALD1Q05682 793 aaKnown RBP24.95■■□□□ 1.58
LMNB1-202ENST00000395354 LMOD3Q0VAK6 560 aa24.95■■□□□ 1.58
LMNB1-202ENST00000395354 PKD1L3Q7Z443 1732 aa24.94■■□□□ 1.58
LMNB1-202ENST00000395354 PCDH11XQ9BZA7 1347 aa24.94■■□□□ 1.58
LMNB1-202ENST00000395354 PCDH11YQ9BZA8 1340 aa24.94■■□□□ 1.58
LMNB1-202ENST00000395354 CYP27B1O15528 508 aa24.94■■□□□ 1.58
LMNB1-202ENST00000395354 C1orf141Q5JVX7 400 aa24.94■■□□□ 1.58
LMNB1-202ENST00000395354 IFNL2Q8IZJ0 200 aa24.94■■□□□ 1.58
LMNB1-202ENST00000395354 PHKG2P15735 406 aa24.93■■□□□ 1.58
LMNB1-202ENST00000395354 AKAP4Q5JQC9 854 aa24.93■■□□□ 1.58
LMNB1-202ENST00000395354 TNS2Q63HR2 1409 aa24.92■■□□□ 1.58
LMNB1-202ENST00000395354 LRRC37A3O60309 1634 aa24.92■■□□□ 1.58
LMNB1-202ENST00000395354 GNAT3A8MTJ3 354 aa24.91■■□□□ 1.58
LMNB1-202ENST00000395354 PLIN1O60240 522 aa24.9■■□□□ 1.58
LMNB1-202ENST00000395354 MARCH10Q8NA82 808 aaPredicted RBP24.9■■□□□ 1.58
LMNB1-202ENST00000395354 FANCIQ9NVI1 1328 aa24.9■■□□□ 1.58
LMNB1-202ENST00000395354 SHANK3Q9BYB0 1731 aa24.89■■□□□ 1.57
LMNB1-202ENST00000395354 EXOC6Q8TAG9 804 aa24.88■■□□□ 1.57
LMNB1-202ENST00000395354 B4GALNT3Q6L9W6 998 aa24.88■■□□□ 1.57
LMNB1-202ENST00000395354 RTF1Q92541 710 aaKnown RBP24.88■■□□□ 1.57
LMNB1-202ENST00000395354 MAP3K5Q99683 1374 aa24.88■■□□□ 1.57
LMNB1-202ENST00000395354 HTATSF1O43719 755 aaKnown RBP24.87■■□□□ 1.57
LMNB1-202ENST00000395354 HSP90AB1P08238 724 aaKnown RBP24.87■■□□□ 1.57
LMNB1-202ENST00000395354 NKX1-1Q15270 411 aaPredicted RBP24.87■■□□□ 1.57
LMNB1-202ENST00000395354 MPRIPQ6WCQ1 1025 aa24.87■■□□□ 1.57
LMNB1-202ENST00000395354 CCDC136Q96JN2 1154 aa24.87■■□□□ 1.57
LMNB1-202ENST00000395354 RGS12O14924 1447 aa24.87■■□□□ 1.57
LMNB1-202ENST00000395354 RARSP54136 660 aaKnown RBP24.86■■□□□ 1.57
LMNB1-202ENST00000395354 KRT27Q7Z3Y8 459 aa24.86■■□□□ 1.57
LMNB1-202ENST00000395354 DLG5Q8TDM6 1919 aa24.86■■□□□ 1.57
LMNB1-202ENST00000395354 BCAR3O75815 825 aa24.84■■□□□ 1.57
LMNB1-202ENST00000395354 DCAF5Q96JK2 942 aa24.84■■□□□ 1.57
LMNB1-202ENST00000395354 LGR6Q9HBX8 967 aa24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms