RNA–Protein interactions for RNA: ENST00000394925.5

TRAF4-203, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-203ENST00000394925 TFCP2L1Q9NZI6 479 aa29.73■■■□□ 2.35
TRAF4-203ENST00000394925 ANKRD36BQ8N2N9 1353 aa29.73■■■□□ 2.35
TRAF4-203ENST00000394925 DOT1LQ8TEK3 1739 aa29.73■■■□□ 2.35
TRAF4-203ENST00000394925 PNPLA7Q6ZV29 1317 aa29.72■■■□□ 2.35
TRAF4-203ENST00000394925 POLD1P28340 1107 aa29.71■■■□□ 2.35
TRAF4-203ENST00000394925 GPR162Q16538 588 aa29.7■■■□□ 2.35
TRAF4-203ENST00000394925 TUBGCP6Q96RT7 1819 aa29.7■■■□□ 2.34
TRAF4-203ENST00000394925 MEGF6O75095 1541 aa29.7■■■□□ 2.34
TRAF4-203ENST00000394925 SHANK3Q9BYB0 1731 aa29.69■■■□□ 2.34
TRAF4-203ENST00000394925 NSD2O96028 1365 aa29.68■■■□□ 2.34
TRAF4-203ENST00000394925 SLC24A1O60721 1099 aa29.68■■■□□ 2.34
TRAF4-203ENST00000394925 RRS1Q15050 365 aaKnown RBP29.68■■■□□ 2.34
TRAF4-203ENST00000394925 LY75O60449 1722 aa29.68■■■□□ 2.34
TRAF4-203ENST00000394925 NBPF6Q5VWK0 638 aa29.66■■■□□ 2.34
TRAF4-203ENST00000394925 NBPF4Q96M43 638 aa29.66■■■□□ 2.34
TRAF4-203ENST00000394925 COL24A1Q17RW2 1714 aa29.65■■■□□ 2.34
TRAF4-203ENST00000394925 USHBP1Q8N6Y0 703 aa29.65■■■□□ 2.34
TRAF4-203ENST00000394925 GGNBP2Q9H3C7 697 aa29.65■■■□□ 2.34
TRAF4-203ENST00000394925 CCNL1Q9UK58 526 aaPredicted RBP29.65■■■□□ 2.34
TRAF4-203ENST00000394925 RTL1A6NKG5 1358 aa29.64■■■□□ 2.34
TRAF4-203ENST00000394925 PELP1Q8IZL8 1130 aaKnown RBP29.64■■■□□ 2.34
TRAF4-203ENST00000394925 FYB1O15117 783 aa29.63■■■□□ 2.33
TRAF4-203ENST00000394925 GOLGB1Q14789 3259 aaKnown RBP29.62■■■□□ 2.33
TRAF4-203ENST00000394925 RAPGEF4Q8WZA2 1011 aa29.61■■■□□ 2.33
TRAF4-203ENST00000394925 USP47Q96K76 1375 aa29.61■■■□□ 2.33
TRAF4-203ENST00000394925 MSH5O43196 834 aa29.6■■■□□ 2.33
TRAF4-203ENST00000394925 TMF1P82094 1093 aa29.59■■■□□ 2.33
TRAF4-203ENST00000394925 NLGN2Q8NFZ4 835 aa29.59■■■□□ 2.33
TRAF4-203ENST00000394925 CGNL1Q0VF96 1302 aa29.59■■■□□ 2.33
TRAF4-203ENST00000394925 SMG6Q86US8 1419 aaKnown RBP29.59■■■□□ 2.33
TRAF4-203ENST00000394925 TATP17735 454 aaPredicted RBP29.57■■■□□ 2.32
TRAF4-203ENST00000394925 COL23A1Q86Y22 540 aaPredicted RBP29.56■■■□□ 2.32
TRAF4-203ENST00000394925 C1QTNF8P60827 252 aa29.55■■■□□ 2.32
TRAF4-203ENST00000394925 HSP90AB2PQ58FF8 381 aa29.55■■■□□ 2.32
TRAF4-203ENST00000394925 SENP3-EIF4A1A0A087X0R7 540 aa29.53■■■□□ 2.32
TRAF4-203ENST00000394925 INSRP06213 1382 aa29.52■■■□□ 2.32
TRAF4-203ENST00000394925 MSL1Q68DK7 614 aa29.52■■■□□ 2.32
TRAF4-203ENST00000394925 PCDH11XQ9BZA7 1347 aa29.51■■■□□ 2.32
TRAF4-203ENST00000394925 PCDH11YQ9BZA8 1340 aa29.51■■■□□ 2.32
TRAF4-203ENST00000394925 KIF20BQ96Q89 1820 aa29.51■■■□□ 2.31
TRAF4-203ENST00000394925 FLT4P35916 1363 aa29.5■■■□□ 2.31
TRAF4-203ENST00000394925 MPRIPQ6WCQ1 1025 aa29.49■■■□□ 2.31
TRAF4-203ENST00000394925 C5P01031 1676 aa29.49■■■□□ 2.31
TRAF4-203ENST00000394925 YBX3P16989 372 aaKnown RBP eCLIP29.47■■■□□ 2.31
TRAF4-203ENST00000394925 PALLDQ8WX93 1383 aa29.47■■■□□ 2.31
TRAF4-203ENST00000394925 CYP27B1O15528 508 aa29.46■■■□□ 2.31
TRAF4-203ENST00000394925 CDCA8Q53HL2 280 aa29.46■■■□□ 2.31
TRAF4-203ENST00000394925 KIF24Q5T7B8 1368 aa29.45■■■□□ 2.31
TRAF4-203ENST00000394925 GIGYF1O75420 1035 aaPredicted RBP29.45■■■□□ 2.31
TRAF4-203ENST00000394925 TAF1LQ8IZX4 1826 aa29.44■■■□□ 2.3
TRAF4-203ENST00000394925 GRIN3BO60391 1043 aa29.44■■■□□ 2.3
TRAF4-203ENST00000394925 FLAD1Q8NFF5 587 aa29.43■■■□□ 2.3
TRAF4-203ENST00000394925 CARD14Q9BXL6 1004 aa29.43■■■□□ 2.3
TRAF4-203ENST00000394925 EMILIN1Q9Y6C2 1016 aa29.43■■■□□ 2.3
TRAF4-203ENST00000394925 ITGB4P16144 1822 aa29.41■■■□□ 2.3
TRAF4-203ENST00000394925 HMGB2P26583 209 aaKnown RBP29.41■■■□□ 2.3
TRAF4-203ENST00000394925 TOGARAM1Q9Y4F4 1720 aa29.4■■■□□ 2.3
TRAF4-203ENST00000394925 NSD3Q9BZ95 1437 aa29.39■■■□□ 2.3
TRAF4-203ENST00000394925 PPM1GO15355 546 aaPredicted RBP29.39■■■□□ 2.3
TRAF4-203ENST00000394925 SMARCC1Q92922 1105 aaPredicted RBP29.39■■■□□ 2.3
TRAF4-203ENST00000394925 AK7Q96M32 723 aa29.38■■■□□ 2.29
TRAF4-203ENST00000394925 C4BP0C0L5 1744 aa29.37■■■□□ 2.29
TRAF4-203ENST00000394925 PKD1L3Q7Z443 1732 aa29.37■■■□□ 2.29
TRAF4-203ENST00000394925 PIGBQ92521 554 aa29.37■■■□□ 2.29
TRAF4-203ENST00000394925 CD2APQ9Y5K6 639 aa29.37■■■□□ 2.29
TRAF4-203ENST00000394925 AMIGO3Q86WK7 504 aa29.35■■■□□ 2.29
TRAF4-203ENST00000394925 PHF14O94880 888 aa29.34■■■□□ 2.29
TRAF4-203ENST00000394925 SMIM5Q71RC9 77 aa29.34■■■□□ 2.29
TRAF4-203ENST00000394925 SPG7Q9UQ90 795 aa29.34■■■□□ 2.29
TRAF4-203ENST00000394925 NCAPD2Q15021 1401 aa29.32■■■□□ 2.28
TRAF4-203ENST00000394925 NKX1-1Q15270 411 aaPredicted RBP29.32■■■□□ 2.28
TRAF4-203ENST00000394925 UBR3Q6ZT12 1888 aa29.31■■■□□ 2.28
TRAF4-203ENST00000394925 WASHC2AQ641Q2 1341 aa29.3■■■□□ 2.28
TRAF4-203ENST00000394925 MAP2P11137 1827 aaKnown RBP29.3■■■□□ 2.28
TRAF4-203ENST00000394925 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.3■■■□□ 2.28
TRAF4-203ENST00000394925 EYA1Q99502 592 aa29.3■■■□□ 2.28
TRAF4-203ENST00000394925 ANKRD26Q9UPS8 1709 aa29.28■■■□□ 2.28
TRAF4-203ENST00000394925 LOC102724428A0A0B4J2F2 783 aa29.28■■■□□ 2.28
TRAF4-203ENST00000394925 SIK1P57059 783 aa29.28■■■□□ 2.28
TRAF4-203ENST00000394925 ATP10DQ9P241 1426 aa29.28■■■□□ 2.28
TRAF4-203ENST00000394925 LINC00116Q8NCU8 138 aa29.27■■■□□ 2.28
TRAF4-203ENST00000394925 TMOD3Q9NYL9 352 aa29.27■■■□□ 2.28
TRAF4-203ENST00000394925 CEP350Q5VT06 3117 aa29.26■■■□□ 2.27
TRAF4-203ENST00000394925 SSFA2P28290 1259 aa29.25■■■□□ 2.27
TRAF4-203ENST00000394925 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.25■■■□□ 2.27
TRAF4-203ENST00000394925 WWC3Q9ULE0 1092 aa29.25■■■□□ 2.27
TRAF4-203ENST00000394925 ASAP1Q9ULH1 1129 aa29.25■■■□□ 2.27
TRAF4-203ENST00000394925 TRIM26Q12899 539 aaPredicted RBP29.24■■■□□ 2.27
TRAF4-203ENST00000394925 POLKQ9UBT6 870 aa29.24■■■□□ 2.27
TRAF4-203ENST00000394925 IFNL2Q8IZJ0 200 aa29.23■■■□□ 2.27
TRAF4-203ENST00000394925 IGSF1Q8N6C5 1336 aa29.22■■■□□ 2.27
TRAF4-203ENST00000394925 PHKG2P15735 406 aa29.22■■■□□ 2.27
TRAF4-203ENST00000394925 ITPK1Q13572 414 aa29.22■■■□□ 2.27
TRAF4-203ENST00000394925 GNPATO15228 680 aa29.21■■■□□ 2.27
TRAF4-203ENST00000394925 ATP6V1AP38606 617 aa29.21■■■□□ 2.27
TRAF4-203ENST00000394925 POLR3GLQ9BT43 218 aa29.21■■■□□ 2.27
TRAF4-203ENST00000394925 TNNT2P45379 298 aaPredicted RBP29.2■■■□□ 2.26
TRAF4-203ENST00000394925 GPBP1L1Q9HC44 474 aaPredicted RBP29.2■■■□□ 2.26
TRAF4-203ENST00000394925 ZNF526Q8TF50 670 aaPredicted RBP29.19■■■□□ 2.26
TRAF4-203ENST00000394925 EIF4A2Q14240 407 aaKnown RBP29.18■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms