RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 SEC24BO95487 1268 aa19.13■□□□□ 0.65
GPC3-202ENST00000394299 HSPA2P54652 639 aa19.13■□□□□ 0.65
GPC3-202ENST00000394299 ARHGAP45Q92619 1136 aa19.12■□□□□ 0.65
GPC3-202ENST00000394299 NBPF6Q5VWK0 638 aa19.12■□□□□ 0.65
GPC3-202ENST00000394299 DDX17Q92841 729 aaKnown RBP19.12■□□□□ 0.65
GPC3-202ENST00000394299 NBPF4Q96M43 638 aa19.12■□□□□ 0.65
GPC3-202ENST00000394299 TSPYL4Q9UJ04 414 aa19.12■□□□□ 0.65
GPC3-202ENST00000394299 HDAC1Q13547 482 aaPredicted RBP19.11■□□□□ 0.65
GPC3-202ENST00000394299 IP6K1Q92551 441 aa19.11■□□□□ 0.65
GPC3-202ENST00000394299 GAS2L2Q8NHY3 880 aa19.11■□□□□ 0.65
GPC3-202ENST00000394299 LRRC59Q96AG4 307 aaKnown RBP19.11■□□□□ 0.65
GPC3-202ENST00000394299 NWD1Q149M9 1564 aa19.1■□□□□ 0.65
GPC3-202ENST00000394299 IL17REQ8NFR9 667 aa19.1■□□□□ 0.65
GPC3-202ENST00000394299 ABCC4O15439 1325 aa19.09■□□□□ 0.65
GPC3-202ENST00000394299 GCP02774 474 aa19.08■□□□□ 0.65
GPC3-202ENST00000394299 GNAT3A8MTJ3 354 aa19.08■□□□□ 0.64
GPC3-202ENST00000394299 KRT28Q7Z3Y7 464 aa19.08■□□□□ 0.64
GPC3-202ENST00000394299 SLC4A3P48751 1232 aa19.07■□□□□ 0.64
GPC3-202ENST00000394299 C19orf44Q9H6X5 657 aa19.07■□□□□ 0.64
GPC3-202ENST00000394299 SLC4A2P04920 1241 aa19.07■□□□□ 0.64
GPC3-202ENST00000394299 KIF24Q5T7B8 1368 aa19.07■□□□□ 0.64
GPC3-202ENST00000394299 SMC5Q8IY18 1101 aa19.06■□□□□ 0.64
GPC3-202ENST00000394299 NECTIN2Q92692 538 aa19.06■□□□□ 0.64
GPC3-202ENST00000394299 API5Q9BZZ5 524 aaKnown RBP19.06■□□□□ 0.64
GPC3-202ENST00000394299 G2E3Q7L622 706 aa19.06■□□□□ 0.64
GPC3-202ENST00000394299 SIRT2Q8IXJ6 389 aa19.06■□□□□ 0.64
GPC3-202ENST00000394299 KCNH5Q8NCM2 988 aa19.05■□□□□ 0.64
GPC3-202ENST00000394299 NFAT5O94916 1531 aa19.05■□□□□ 0.64
GPC3-202ENST00000394299 BCL11AQ9H165 835 aa19.05■□□□□ 0.64
GPC3-202ENST00000394299 AXIN2Q9Y2T1 843 aa19.05■□□□□ 0.64
GPC3-202ENST00000394299 KIAA0232Q92628 1395 aa19.05■□□□□ 0.64
GPC3-202ENST00000394299 ARHGEF25Q86VW2 580 aa19.04■□□□□ 0.64
GPC3-202ENST00000394299 LNPKQ9C0E8 428 aa19.04■□□□□ 0.64
GPC3-202ENST00000394299 MSH6P52701 1360 aa19.04■□□□□ 0.64
GPC3-202ENST00000394299 LGR6Q9HBX8 967 aa19.03■□□□□ 0.64
GPC3-202ENST00000394299 USP19O94966 1318 aa19.03■□□□□ 0.64
GPC3-202ENST00000394299 TMEM94Q12767 1356 aa19.03■□□□□ 0.64
GPC3-202ENST00000394299 C1orf167Q5SNV9 1468 aa19.03■□□□□ 0.64
GPC3-202ENST00000394299 LTN1O94822 1766 aa19.03■□□□□ 0.64
GPC3-202ENST00000394299 ZC3H6P61129 1189 aaKnown RBP19.02■□□□□ 0.64
GPC3-202ENST00000394299 USP54Q70EL1 1684 aa19.02■□□□□ 0.64
GPC3-202ENST00000394299 RTL1A6NKG5 1358 aa19.02■□□□□ 0.63
GPC3-202ENST00000394299 F6X3S4 739 aa19.01■□□□□ 0.63
GPC3-202ENST00000394299 RGS12O14924 1447 aa19.01■□□□□ 0.63
GPC3-202ENST00000394299 MAP3K5Q99683 1374 aa19.01■□□□□ 0.63
GPC3-202ENST00000394299 NBR1Q14596 966 aa19.01■□□□□ 0.63
GPC3-202ENST00000394299 HTATSF1O43719 755 aaKnown RBP19■□□□□ 0.63
GPC3-202ENST00000394299 ATF3P18847 181 aa19■□□□□ 0.63
GPC3-202ENST00000394299 NUCB1Q02818 461 aa19■□□□□ 0.63
GPC3-202ENST00000394299 ANKRD45Q5TZF3 282 aa18.99■□□□□ 0.63
GPC3-202ENST00000394299 INTS3Q68E01 1043 aaKnown RBP18.99■□□□□ 0.63
GPC3-202ENST00000394299 TAF7Q15545 349 aaPredicted RBP18.99■□□□□ 0.63
GPC3-202ENST00000394299 ANKRD24Q8TF21 1146 aa18.99■□□□□ 0.63
GPC3-202ENST00000394299 SLC4A10Q6U841 1118 aa18.98■□□□□ 0.63
GPC3-202ENST00000394299 CABLES1Q8TDN4 633 aa18.98■□□□□ 0.63
GPC3-202ENST00000394299 HAP1P54257 671 aaPredicted RBP18.98■□□□□ 0.63
GPC3-202ENST00000394299 CHD1LQ86WJ1 897 aa18.98■□□□□ 0.63
GPC3-202ENST00000394299 RGPD2P0DJD1 1756 aa18.97■□□□□ 0.63
GPC3-202ENST00000394299 MPRIPQ6WCQ1 1025 aa18.97■□□□□ 0.63
GPC3-202ENST00000394299 MEIS3Q99687 375 aa18.97■□□□□ 0.63
GPC3-202ENST00000394299 KCNQ3O43525 872 aa18.96■□□□□ 0.63
GPC3-202ENST00000394299 STRCP1A6NGW2 1772 aa18.96■□□□□ 0.63
GPC3-202ENST00000394299 CHMP4BQ9H444 224 aaKnown RBP18.96■□□□□ 0.63
GPC3-202ENST00000394299 ZNF530Q6P9A1 599 aaPredicted RBP18.95■□□□□ 0.62
GPC3-202ENST00000394299 DDRGK1Q96HY6 314 aa18.95■□□□□ 0.62
GPC3-202ENST00000394299 PTPRCP08575 1304 aa18.95■□□□□ 0.62
GPC3-202ENST00000394299 MST1RQ04912 1400 aa18.94■□□□□ 0.62
GPC3-202ENST00000394299 STK31Q9BXU1 1019 aa18.93■□□□□ 0.62
GPC3-202ENST00000394299 GCC1Q96CN9 775 aa18.92■□□□□ 0.62
GPC3-202ENST00000394299 SLIT3O75094 1523 aa18.91■□□□□ 0.62
GPC3-202ENST00000394299 EIF2S2P20042 333 aaKnown RBP18.91■□□□□ 0.62
GPC3-202ENST00000394299 FLIIQ13045 1269 aa18.91■□□□□ 0.62
GPC3-202ENST00000394299 TRPM3Q9HCF6 1732 aaPredicted RBP18.91■□□□□ 0.62
GPC3-202ENST00000394299 FKBP5Q13451 457 aaPredicted RBP18.91■□□□□ 0.62
GPC3-202ENST00000394299 PLEKHO1Q53GL0 409 aaPredicted RBP18.91■□□□□ 0.62
GPC3-202ENST00000394299 CCDC30Q5VVM6 783 aa18.91■□□□□ 0.62
GPC3-202ENST00000394299 CEMIPQ8WUJ3 1361 aa18.91■□□□□ 0.62
GPC3-202ENST00000394299 KDM4FA0A1W2PPD8 638 aa18.9■□□□□ 0.62
GPC3-202ENST00000394299 CHRNA2Q15822 529 aa18.9■□□□□ 0.62
GPC3-202ENST00000394299 PHAXQ9H814 394 aaKnown RBP18.9■□□□□ 0.62
GPC3-202ENST00000394299 APBB1O00213 710 aa18.9■□□□□ 0.62
GPC3-202ENST00000394299 CEP85Q6P2H3 762 aa18.9■□□□□ 0.62
GPC3-202ENST00000394299 LRRC37A3O60309 1634 aa18.9■□□□□ 0.62
GPC3-202ENST00000394299 AKAP4Q5JQC9 854 aa18.89■□□□□ 0.61
GPC3-202ENST00000394299 C16orf71Q8IYS4 520 aaPredicted RBP18.89■□□□□ 0.61
GPC3-202ENST00000394299 MFAP1P55081 439 aaKnown RBP18.89■□□□□ 0.61
GPC3-202ENST00000394299 EIF4A1P60842 406 aaKnown RBP18.89■□□□□ 0.61
GPC3-202ENST00000394299 ANKRD44Q8N8A2 993 aa18.89■□□□□ 0.61
GPC3-202ENST00000394299 PXDNQ92626 1479 aa18.88■□□□□ 0.61
GPC3-202ENST00000394299 HDGFL1Q5TGJ6 251 aa18.88■□□□□ 0.61
GPC3-202ENST00000394299 CADPS2Q86UW7 1296 aa18.88■□□□□ 0.61
GPC3-202ENST00000394299 MED1Q15648 1581 aaPredicted RBP18.88■□□□□ 0.61
GPC3-202ENST00000394299 ATP10DQ9P241 1426 aa18.88■□□□□ 0.61
GPC3-202ENST00000394299 VIRMAQ69YN4 1812 aaKnown RBP18.88■□□□□ 0.61
GPC3-202ENST00000394299 ANXA1P04083 346 aa18.88■□□□□ 0.61
GPC3-202ENST00000394299 TEFQ10587 303 aa18.88■□□□□ 0.61
GPC3-202ENST00000394299 DCTPP1Q9H773 170 aa18.88■□□□□ 0.61
GPC3-202ENST00000394299 NLRP2Q9NX02 1062 aa18.88■□□□□ 0.61
GPC3-202ENST00000394299 ERBB3P21860 1342 aa18.87■□□□□ 0.61
GPC3-202ENST00000394299 BTBD11A6QL63 1104 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms