RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 CT47B1P0C2W7 299 aaPredicted RBP26.34■■□□□ 1.81
HDDC3-202ENST00000394272 NLRP2Q9NX02 1062 aa26.34■■□□□ 1.81
HDDC3-202ENST00000394272 CRB1P82279 1406 aa26.34■■□□□ 1.81
HDDC3-202ENST00000394272 GNAT3A8MTJ3 354 aa26.34■■□□□ 1.81
HDDC3-202ENST00000394272 CSB-PGBD3P0DP91 1061 aa26.34■■□□□ 1.81
HDDC3-202ENST00000394272 EXOSC9Q06265 439 aaKnown RBP26.34■■□□□ 1.81
HDDC3-202ENST00000394272 RTF1Q92541 710 aaKnown RBP26.34■■□□□ 1.81
HDDC3-202ENST00000394272 LAS1LQ9Y4W2 734 aaKnown RBP26.32■■□□□ 1.8
HDDC3-202ENST00000394272 WDR17Q8IZU2 1322 aa26.32■■□□□ 1.8
HDDC3-202ENST00000394272 AMOTQ4VCS5 1084 aa26.32■■□□□ 1.8
HDDC3-202ENST00000394272 PLEKHO1Q53GL0 409 aaPredicted RBP26.32■■□□□ 1.8
HDDC3-202ENST00000394272 MBIPQ9NS73 344 aa26.32■■□□□ 1.8
HDDC3-202ENST00000394272 CERKQ8TCT0 537 aa26.31■■□□□ 1.8
HDDC3-202ENST00000394272 PLEKHG2Q9H7P9 1386 aa26.31■■□□□ 1.8
HDDC3-202ENST00000394272 COL14A1Q05707 1796 aaKnown RBP26.3■■□□□ 1.8
HDDC3-202ENST00000394272 RARSP54136 660 aaKnown RBP26.3■■□□□ 1.8
HDDC3-202ENST00000394272 BCAR3O75815 825 aa26.29■■□□□ 1.8
HDDC3-202ENST00000394272 MEGF6O75095 1541 aa26.28■■□□□ 1.8
HDDC3-202ENST00000394272 CHL1O00533 1208 aa26.28■■□□□ 1.8
HDDC3-202ENST00000394272 PLIN1O60240 522 aa26.28■■□□□ 1.8
HDDC3-202ENST00000394272 IL17REQ8NFR9 667 aa26.27■■□□□ 1.8
HDDC3-202ENST00000394272 RAPGEF4Q8WZA2 1011 aa26.27■■□□□ 1.8
HDDC3-202ENST00000394272 VIRMAQ69YN4 1812 aaKnown RBP26.27■■□□□ 1.8
HDDC3-202ENST00000394272 AKAP4Q5JQC9 854 aa26.26■■□□□ 1.79
HDDC3-202ENST00000394272 CEMIPQ8WUJ3 1361 aa26.26■■□□□ 1.79
HDDC3-202ENST00000394272 ZNF530Q6P9A1 599 aaPredicted RBP26.25■■□□□ 1.79
HDDC3-202ENST00000394272 PKD1L3Q7Z443 1732 aa26.25■■□□□ 1.79
HDDC3-202ENST00000394272 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.25■■□□□ 1.79
HDDC3-202ENST00000394272 TATP17735 454 aaPredicted RBP26.24■■□□□ 1.79
HDDC3-202ENST00000394272 TOM1L2Q6ZVM7 507 aa26.23■■□□□ 1.79
HDDC3-202ENST00000394272 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.23■■□□□ 1.79
HDDC3-202ENST00000394272 CARD10Q9BWT7 1032 aa26.22■■□□□ 1.79
HDDC3-202ENST00000394272 ADAMTS7Q9UKP4 1686 aa26.22■■□□□ 1.79
HDDC3-202ENST00000394272 PARP4Q9UKK3 1724 aaKnown RBP26.22■■□□□ 1.79
HDDC3-202ENST00000394272 BTG4Q9NY30 223 aa26.21■■□□□ 1.79
HDDC3-202ENST00000394272 LARP1Q6PKG0 1096 aaKnown RBP26.21■■□□□ 1.79
HDDC3-202ENST00000394272 ZNF428Q96B54 188 aa26.21■■□□□ 1.79
HDDC3-202ENST00000394272 C1orf141Q5JVX7 400 aa26.2■■□□□ 1.78
HDDC3-202ENST00000394272 STRN4Q9NRL3 753 aa26.2■■□□□ 1.78
HDDC3-202ENST00000394272 OVOS2A0A0G2JMS6 1433 aa26.2■■□□□ 1.78
HDDC3-202ENST00000394272 VAMP4O75379 141 aa26.19■■□□□ 1.78
HDDC3-202ENST00000394272 EVA1CP58658 441 aa26.19■■□□□ 1.78
HDDC3-202ENST00000394272 TSPYL6Q8N831 410 aa26.19■■□□□ 1.78
HDDC3-202ENST00000394272 C20orf194Q5TEA3 1177 aa26.19■■□□□ 1.78
HDDC3-202ENST00000394272 PLCH1Q4KWH8 1693 aa26.19■■□□□ 1.78
HDDC3-202ENST00000394272 C8orf58Q8NAV2 365 aa26.18■■□□□ 1.78
HDDC3-202ENST00000394272 BCL2L13Q9BXK5 485 aa26.18■■□□□ 1.78
HDDC3-202ENST00000394272 LGR6Q9HBX8 967 aa26.18■■□□□ 1.78
HDDC3-202ENST00000394272 BABAM1Q9NWV8 329 aa26.18■■□□□ 1.78
HDDC3-202ENST00000394272 SPG7Q9UQ90 795 aa26.18■■□□□ 1.78
HDDC3-202ENST00000394272 SSH1Q8WYL5 1049 aa26.17■■□□□ 1.78
HDDC3-202ENST00000394272 PPP4R2Q9NY27 417 aa26.17■■□□□ 1.78
HDDC3-202ENST00000394272 TSPYL4Q9UJ04 414 aa26.17■■□□□ 1.78
HDDC3-202ENST00000394272 TAF7Q15545 349 aaPredicted RBP26.17■■□□□ 1.78
HDDC3-202ENST00000394272 ALDH1L2Q3SY69 923 aa26.17■■□□□ 1.78
HDDC3-202ENST00000394272 MIS18AQ9NYP9 233 aa26.17■■□□□ 1.78
HDDC3-202ENST00000394272 TWISTNBQ3B726 338 aaPredicted RBP26.16■■□□□ 1.78
HDDC3-202ENST00000394272 MPRIPQ6WCQ1 1025 aa26.15■■□□□ 1.78
HDDC3-202ENST00000394272 SCN11AQ9UI33 1791 aa26.15■■□□□ 1.78
HDDC3-202ENST00000394272 RNMTO43148 476 aaKnown RBP26.15■■□□□ 1.78
HDDC3-202ENST00000394272 EXOC6Q8TAG9 804 aa26.15■■□□□ 1.78
HDDC3-202ENST00000394272 SMC4Q9NTJ3 1288 aa26.15■■□□□ 1.78
HDDC3-202ENST00000394272 JCADQ9P266 1359 aa26.14■■□□□ 1.78
HDDC3-202ENST00000394272 SIPA1L3O60292 1781 aaPredicted RBP26.14■■□□□ 1.78
HDDC3-202ENST00000394272 NRAPQ86VF7 1730 aa26.14■■□□□ 1.78
HDDC3-202ENST00000394272 ADAMTS2O95450 1211 aa26.13■■□□□ 1.77
HDDC3-202ENST00000394272 PHKG2P15735 406 aa26.13■■□□□ 1.77
HDDC3-202ENST00000394272 KDM3BQ7LBC6 1761 aa26.13■■□□□ 1.77
HDDC3-202ENST00000394272 ELL2O00472 640 aaPredicted RBP26.13■■□□□ 1.77
HDDC3-202ENST00000394272 CRBNQ96SW2 442 aa26.13■■□□□ 1.77
HDDC3-202ENST00000394272 BRPF1P55201 1214 aaPredicted RBP26.12■■□□□ 1.77
HDDC3-202ENST00000394272 PDE3AQ14432 1141 aa26.12■■□□□ 1.77
HDDC3-202ENST00000394272 KRT24Q2M2I5 525 aa26.12■■□□□ 1.77
HDDC3-202ENST00000394272 IL2RBP14784 551 aa26.11■■□□□ 1.77
HDDC3-202ENST00000394272 IFNL2Q8IZJ0 200 aa26.11■■□□□ 1.77
HDDC3-202ENST00000394272 FRAT1Q92837 279 aaPredicted RBP26.11■■□□□ 1.77
HDDC3-202ENST00000394272 SHANK3Q9BYB0 1731 aa26.11■■□□□ 1.77
HDDC3-202ENST00000394272 KDM6AO15550 1401 aaPredicted RBP26.11■■□□□ 1.77
HDDC3-202ENST00000394272 NWD2Q9ULI1 1742 aa26.11■■□□□ 1.77
HDDC3-202ENST00000394272 CYP27B1O15528 508 aa26.11■■□□□ 1.77
HDDC3-202ENST00000394272 NUTM2BA6NNL0 878 aaPredicted RBP26.1■■□□□ 1.77
HDDC3-202ENST00000394272 NUTM2EB1AL46 878 aaPredicted RBP26.1■■□□□ 1.77
HDDC3-202ENST00000394272 CANXP27824 592 aaKnown RBP26.1■■□□□ 1.77
HDDC3-202ENST00000394272 NUTM2AQ8IVF1 878 aaPredicted RBP26.1■■□□□ 1.77
HDDC3-202ENST00000394272 TEFQ10587 303 aa26.09■■□□□ 1.77
HDDC3-202ENST00000394272 SLIT2O94813 1529 aa26.07■■□□□ 1.76
HDDC3-202ENST00000394272 ZCRB1Q8TBF4 217 aaKnown RBP26.07■■□□□ 1.76
HDDC3-202ENST00000394272 KIF16BQ96L93 1317 aa26.07■■□□□ 1.76
HDDC3-202ENST00000394272 ZKSCAN2Q63HK3 967 aa26.06■■□□□ 1.76
HDDC3-202ENST00000394272 MRPL50Q8N5N7 158 aaKnown RBP26.06■■□□□ 1.76
HDDC3-202ENST00000394272 DISP2A7MBM2 1401 aa26.06■■□□□ 1.76
HDDC3-202ENST00000394272 WNK3Q9BYP7 1800 aa26.06■■□□□ 1.76
HDDC3-202ENST00000394272 MRC1P22897 1456 aa26.06■■□□□ 1.76
HDDC3-202ENST00000394272 PCDH11XQ9BZA7 1347 aa26.06■■□□□ 1.76
HDDC3-202ENST00000394272 PCDH11YQ9BZA8 1340 aa26.06■■□□□ 1.76
HDDC3-202ENST00000394272 USP35Q9P2H5 1018 aa26.05■■□□□ 1.76
HDDC3-202ENST00000394272 HSP90AB1P08238 724 aaKnown RBP26.04■■□□□ 1.76
HDDC3-202ENST00000394272 DCAF5Q96JK2 942 aa26.04■■□□□ 1.76
HDDC3-202ENST00000394272 NOB1Q9ULX3 412 aaKnown RBP26.04■■□□□ 1.76
HDDC3-202ENST00000394272 TNNQ9UQP3 1299 aa26.04■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms