RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 KIF24Q5T7B8 1368 aa10.49□□□□□ -0.73
HMGB3P1-201ENST00000393368 APBA3O96018 575 aa10.48□□□□□ -0.73
HMGB3P1-201ENST00000393368 ACSBG1Q96GR2 724 aa10.48□□□□□ -0.73
HMGB3P1-201ENST00000393368 BAG6P46379 1132 aa10.47□□□□□ -0.73
HMGB3P1-201ENST00000393368 EIF4A2Q14240 407 aaKnown RBP10.47□□□□□ -0.73
HMGB3P1-201ENST00000393368 EZH2Q15910 746 aaKnown RBP10.47□□□□□ -0.73
HMGB3P1-201ENST00000393368 DDX54Q8TDD1 881 aaKnown RBP10.47□□□□□ -0.73
HMGB3P1-201ENST00000393368 KCNQ2O43526 872 aa10.46□□□□□ -0.73
HMGB3P1-201ENST00000393368 C1QBPQ07021 282 aaKnown RBP10.46□□□□□ -0.73
HMGB3P1-201ENST00000393368 EYA1Q99502 592 aa10.46□□□□□ -0.73
HMGB3P1-201ENST00000393368 MAP2P11137 1827 aaKnown RBP10.45□□□□□ -0.74
HMGB3P1-201ENST00000393368 RAPGEF4Q8WZA2 1011 aa10.45□□□□□ -0.74
HMGB3P1-201ENST00000393368 SHANK3Q9BYB0 1731 aa10.44□□□□□ -0.74
HMGB3P1-201ENST00000393368 TATP17735 454 aaPredicted RBP10.44□□□□□ -0.74
HMGB3P1-201ENST00000393368 ZCRB1Q8TBF4 217 aaKnown RBP10.44□□□□□ -0.74
HMGB3P1-201ENST00000393368 CAMKK2Q96RR4 588 aa10.44□□□□□ -0.74
HMGB3P1-201ENST00000393368 BCL9O00512 1426 aa10.43□□□□□ -0.74
HMGB3P1-201ENST00000393368 NCAPD2Q15021 1401 aa10.43□□□□□ -0.74
HMGB3P1-201ENST00000393368 PSDA5PKW4 1024 aaPredicted RBP10.43□□□□□ -0.74
HMGB3P1-201ENST00000393368 MTHFSP49914 203 aa10.43□□□□□ -0.74
HMGB3P1-201ENST00000393368 AEBP1Q8IUX7 1158 aa10.43□□□□□ -0.74
HMGB3P1-201ENST00000393368 BCL11BQ9C0K0 894 aaPredicted RBP10.43□□□□□ -0.74
HMGB3P1-201ENST00000393368 IGSF1Q8N6C5 1336 aa10.42□□□□□ -0.74
HMGB3P1-201ENST00000393368 SBF2Q86WG5 1849 aa10.42□□□□□ -0.74
HMGB3P1-201ENST00000393368 NPC1L1Q9UHC9 1359 aa10.41□□□□□ -0.74
HMGB3P1-201ENST00000393368 NHSQ6T4R5 1651 aa10.41□□□□□ -0.74
HMGB3P1-201ENST00000393368 IL13P35225 146 aa10.41□□□□□ -0.74
HMGB3P1-201ENST00000393368 SYTL4Q96C24 671 aaPredicted RBP10.41□□□□□ -0.74
HMGB3P1-201ENST00000393368 SRCAPQ6ZRS2 3230 aa10.41□□□□□ -0.74
HMGB3P1-201ENST00000393368 CYP27B1O15528 508 aa10.4□□□□□ -0.74
HMGB3P1-201ENST00000393368 DOT1LQ8TEK3 1739 aa10.4□□□□□ -0.74
HMGB3P1-201ENST00000393368 RREB1Q92766 1687 aa10.4□□□□□ -0.74
HMGB3P1-201ENST00000393368 PCDH11XQ9BZA7 1347 aa10.39□□□□□ -0.75
HMGB3P1-201ENST00000393368 PCDH11YQ9BZA8 1340 aa10.39□□□□□ -0.75
HMGB3P1-201ENST00000393368 NUP188Q5SRE5 1749 aa10.39□□□□□ -0.75
HMGB3P1-201ENST00000393368 COL3A1P02461 1466 aaPredicted RBP10.39□□□□□ -0.75
HMGB3P1-201ENST00000393368 SLC4A2P04920 1241 aa10.39□□□□□ -0.75
HMGB3P1-201ENST00000393368 PRIM1P49642 420 aaKnown RBP10.39□□□□□ -0.75
HMGB3P1-201ENST00000393368 DDX10Q13206 875 aaKnown RBP10.39□□□□□ -0.75
HMGB3P1-201ENST00000393368 R3HDM1Q15032 1099 aaKnown RBP10.39□□□□□ -0.75
HMGB3P1-201ENST00000393368 SULT6B1Q6IMI4 303 aa10.39□□□□□ -0.75
HMGB3P1-201ENST00000393368 PROM2Q8N271 834 aa10.39□□□□□ -0.75
HMGB3P1-201ENST00000393368 PARD3Q8TEW0 1356 aa10.39□□□□□ -0.75
HMGB3P1-201ENST00000393368 PKD1L3Q7Z443 1732 aa10.38□□□□□ -0.75
HMGB3P1-201ENST00000393368 HMOX1P09601 288 aa10.38□□□□□ -0.75
HMGB3P1-201ENST00000393368 ZEB1P37275 1124 aaPredicted RBP10.38□□□□□ -0.75
HMGB3P1-201ENST00000393368 PLSCR1O15162 318 aa10.37□□□□□ -0.75
HMGB3P1-201ENST00000393368 DIAPH1O60610 1272 aaKnown RBP10.37□□□□□ -0.75
HMGB3P1-201ENST00000393368 PPP2R1AP30153 589 aa10.37□□□□□ -0.75
HMGB3P1-201ENST00000393368 KCNQ4P56696 695 aa10.37□□□□□ -0.75
HMGB3P1-201ENST00000393368 TXNRD1Q16881 649 aa10.37□□□□□ -0.75
HMGB3P1-201ENST00000393368 ANO8Q9HCE9 1232 aaPredicted RBP10.37□□□□□ -0.75
HMGB3P1-201ENST00000393368 SPG7Q9UQ90 795 aa10.37□□□□□ -0.75
HMGB3P1-201ENST00000393368 TOGARAM1Q9Y4F4 1720 aa10.37□□□□□ -0.75
HMGB3P1-201ENST00000393368 BTAF1O14981 1849 aa10.37□□□□□ -0.75
HMGB3P1-201ENST00000393368 PHKG2P15735 406 aa10.36□□□□□ -0.75
HMGB3P1-201ENST00000393368 U3KPZ7 1027 aaPredicted RBP10.36□□□□□ -0.75
HMGB3P1-201ENST00000393368 RGPD3A6NKT7 1758 aaPredicted RBP10.35□□□□□ -0.75
HMGB3P1-201ENST00000393368 RGPD4Q7Z3J3 1758 aa10.35□□□□□ -0.75
HMGB3P1-201ENST00000393368 U2SURPO15042 1029 aaKnown RBP10.35□□□□□ -0.75
HMGB3P1-201ENST00000393368 MPRIPQ6WCQ1 1025 aa10.35□□□□□ -0.75
HMGB3P1-201ENST00000393368 KDRP35968 1356 aa10.35□□□□□ -0.75
HMGB3P1-201ENST00000393368 ZNF530Q6P9A1 599 aaPredicted RBP10.34□□□□□ -0.75
HMGB3P1-201ENST00000393368 IFNL2Q8IZJ0 200 aa10.34□□□□□ -0.75
HMGB3P1-201ENST00000393368 LRRC4BQ9NT99 713 aa10.34□□□□□ -0.75
HMGB3P1-201ENST00000393368 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.34□□□□□ -0.75
HMGB3P1-201ENST00000393368 KDM6AO15550 1401 aaPredicted RBP10.33□□□□□ -0.76
HMGB3P1-201ENST00000393368 NKX1-1Q15270 411 aaPredicted RBP10.33□□□□□ -0.76
HMGB3P1-201ENST00000393368 PLEKHO1Q53GL0 409 aaPredicted RBP10.33□□□□□ -0.76
HMGB3P1-201ENST00000393368 NBPF14Q5TI25 921 aa10.33□□□□□ -0.76
HMGB3P1-201ENST00000393368 PDGFDQ9GZP0 370 aaPredicted RBP10.33□□□□□ -0.76
HMGB3P1-201ENST00000393368 ZNF827Q17R98 1081 aa10.32□□□□□ -0.76
HMGB3P1-201ENST00000393368 PIGBQ92521 554 aa10.32□□□□□ -0.76
HMGB3P1-201ENST00000393368 CFAP53Q96M91 514 aa10.32□□□□□ -0.76
HMGB3P1-201ENST00000393368 PAPPAQ13219 1627 aa10.32□□□□□ -0.76
HMGB3P1-201ENST00000393368 MTHFSDQ2M296 383 aaKnown RBP10.31□□□□□ -0.76
HMGB3P1-201ENST00000393368 AMOTQ4VCS5 1084 aa10.31□□□□□ -0.76
HMGB3P1-201ENST00000393368 TMOD3Q9NYL9 352 aa10.31□□□□□ -0.76
HMGB3P1-201ENST00000393368 PALLDQ8WX93 1383 aa10.3□□□□□ -0.76
HMGB3P1-201ENST00000393368 SLC15A2Q16348 729 aa10.3□□□□□ -0.76
HMGB3P1-201ENST00000393368 C1orf141Q5JVX7 400 aa10.3□□□□□ -0.76
HMGB3P1-201ENST00000393368 STK32BQ9NY57 414 aa10.3□□□□□ -0.76
HMGB3P1-201ENST00000393368 CCNL1Q9UK58 526 aaPredicted RBP10.3□□□□□ -0.76
HMGB3P1-201ENST00000393368 ASAP1Q9ULH1 1129 aa10.3□□□□□ -0.76
HMGB3P1-201ENST00000393368 PLEKHG2Q9H7P9 1386 aa10.29□□□□□ -0.76
HMGB3P1-201ENST00000393368 U2AF1L5P0DN76 240 aaPredicted RBP10.29□□□□□ -0.76
HMGB3P1-201ENST00000393368 PRKAR2BP31323 418 aa10.29□□□□□ -0.76
HMGB3P1-201ENST00000393368 U2AF1Q01081 240 aaKnown RBP eCLIP10.29□□□□□ -0.76
HMGB3P1-201ENST00000393368 DCAF5Q96JK2 942 aa10.29□□□□□ -0.76
HMGB3P1-201ENST00000393368 RSPH6AQ9H0K4 717 aa10.29□□□□□ -0.76
HMGB3P1-201ENST00000393368 LGR6Q9HBX8 967 aa10.29□□□□□ -0.76
HMGB3P1-201ENST00000393368 ITGB4P16144 1822 aa10.28□□□□□ -0.76
HMGB3P1-201ENST00000393368 LY75O60449 1722 aa10.28□□□□□ -0.76
HMGB3P1-201ENST00000393368 HSP90AB1P08238 724 aaKnown RBP10.28□□□□□ -0.76
HMGB3P1-201ENST00000393368 SLC27A3Q5K4L6 730 aa10.28□□□□□ -0.76
HMGB3P1-201ENST00000393368 PHACTR3Q96KR7 559 aa10.28□□□□□ -0.76
HMGB3P1-201ENST00000393368 ATG3Q9NT62 314 aa10.28□□□□□ -0.76
HMGB3P1-201ENST00000393368 ZBTB7AO95365 584 aa10.27□□□□□ -0.77
HMGB3P1-201ENST00000393368 CABP4P57796 275 aa10.27□□□□□ -0.77
HMGB3P1-201ENST00000393368 RALBP1Q15311 655 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms