RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 NUTM2BA6NNL0 878 aaPredicted RBP16.08■□□□□ 0.17
CIITA-202ENST00000381835 NUTM2EB1AL46 878 aaPredicted RBP16.08■□□□□ 0.17
CIITA-202ENST00000381835 NUTM2AQ8IVF1 878 aaPredicted RBP16.08■□□□□ 0.17
CIITA-202ENST00000381835 MYH16Q9H6N6 1097 aa16.08■□□□□ 0.17
CIITA-202ENST00000381835 RCAN3Q9UKA8 241 aa16.08■□□□□ 0.17
CIITA-202ENST00000381835 LAS1LQ9Y4W2 734 aaKnown RBP16.08■□□□□ 0.17
CIITA-202ENST00000381835 NCAPD2Q15021 1401 aa16.08■□□□□ 0.17
CIITA-202ENST00000381835 FAM208AQ9UK61 1670 aaKnown RBP16.08■□□□□ 0.17
CIITA-202ENST00000381835 COL5A2P05997 1499 aaPredicted RBP16.08■□□□□ 0.16
CIITA-202ENST00000381835 MCM10Q7L590 875 aa16.08■□□□□ 0.16
CIITA-202ENST00000381835 TSR2Q969E8 191 aaKnown RBP16.08■□□□□ 0.16
CIITA-202ENST00000381835 ADAMTS2O95450 1211 aa16.07■□□□□ 0.16
CIITA-202ENST00000381835 EVA1CP58658 441 aa16.07■□□□□ 0.16
CIITA-202ENST00000381835 TOM1L2Q6ZVM7 507 aa16.07■□□□□ 0.16
CIITA-202ENST00000381835 IL16Q14005 1332 aa16.07■□□□□ 0.16
CIITA-202ENST00000381835 WDR17Q8IZU2 1322 aa16.07■□□□□ 0.16
CIITA-202ENST00000381835 RTF1Q92541 710 aaKnown RBP16.07■□□□□ 0.16
CIITA-202ENST00000381835 BTG4Q9NY30 223 aa16.07■□□□□ 0.16
CIITA-202ENST00000381835 CALD1Q05682 793 aaKnown RBP16.06■□□□□ 0.16
CIITA-202ENST00000381835 RAPGEF4Q8WZA2 1011 aa16.06■□□□□ 0.16
CIITA-202ENST00000381835 PLEKHO1Q53GL0 409 aaPredicted RBP16.05■□□□□ 0.16
CIITA-202ENST00000381835 GNAT3A8MTJ3 354 aa16.05■□□□□ 0.16
CIITA-202ENST00000381835 COL14A1Q05707 1796 aaKnown RBP16.04■□□□□ 0.16
CIITA-202ENST00000381835 ANP32AP39687 249 aaKnown RBP16.04■□□□□ 0.16
CIITA-202ENST00000381835 LARP1Q6PKG0 1096 aaKnown RBP16.04■□□□□ 0.16
CIITA-202ENST00000381835 TATP17735 454 aaPredicted RBP16.03■□□□□ 0.16
CIITA-202ENST00000381835 DEKP35659 375 aaKnown RBP16.03■□□□□ 0.16
CIITA-202ENST00000381835 AMOTQ4VCS5 1084 aa16.03■□□□□ 0.16
CIITA-202ENST00000381835 ZNF530Q6P9A1 599 aaPredicted RBP16.03■□□□□ 0.16
CIITA-202ENST00000381835 MAP3K5Q99683 1374 aa16.03■□□□□ 0.16
CIITA-202ENST00000381835 GNAI1P63096 354 aa16.02■□□□□ 0.16
CIITA-202ENST00000381835 JCADQ9P266 1359 aa16.02■□□□□ 0.16
CIITA-202ENST00000381835 MEGF6O75095 1541 aa16.02■□□□□ 0.16
CIITA-202ENST00000381835 NBR1Q14596 966 aa16.02■□□□□ 0.15
CIITA-202ENST00000381835 IFT57Q9NWB7 429 aa16.02■□□□□ 0.15
CIITA-202ENST00000381835 USP35Q9P2H5 1018 aa16.02■□□□□ 0.15
CIITA-202ENST00000381835 CFAP44Q96MT7 982 aa16.01■□□□□ 0.15
CIITA-202ENST00000381835 HTATSF1O43719 755 aaKnown RBP16.01■□□□□ 0.15
CIITA-202ENST00000381835 HSPA1LP34931 641 aa16.01■□□□□ 0.15
CIITA-202ENST00000381835 EXOSC9Q06265 439 aaKnown RBP16.01■□□□□ 0.15
CIITA-202ENST00000381835 IPO9Q96P70 1041 aaKnown RBP16.01■□□□□ 0.15
CIITA-202ENST00000381835 CARD10Q9BWT7 1032 aa16.01■□□□□ 0.15
CIITA-202ENST00000381835 C1orf141Q5JVX7 400 aa16■□□□□ 0.15
CIITA-202ENST00000381835 MBIPQ9NS73 344 aa16■□□□□ 0.15
CIITA-202ENST00000381835 ZNF853P0CG23 659 aa16■□□□□ 0.15
CIITA-202ENST00000381835 AKAP4Q5JQC9 854 aa16■□□□□ 0.15
CIITA-202ENST00000381835 IL17REQ8NFR9 667 aa16■□□□□ 0.15
CIITA-202ENST00000381835 PLCH1Q4KWH8 1693 aa15.99■□□□□ 0.15
CIITA-202ENST00000381835 CRB1P82279 1406 aa15.99■□□□□ 0.15
CIITA-202ENST00000381835 RRP1P56182 461 aaKnown RBP15.98■□□□□ 0.15
CIITA-202ENST00000381835 MPRIPQ6WCQ1 1025 aa15.98■□□□□ 0.15
CIITA-202ENST00000381835 MIS18AQ9NYP9 233 aa15.98■□□□□ 0.15
CIITA-202ENST00000381835 SPG7Q9UQ90 795 aa15.98■□□□□ 0.15
CIITA-202ENST00000381835 VIRMAQ69YN4 1812 aaKnown RBP15.98■□□□□ 0.15
CIITA-202ENST00000381835 LGR6Q9HBX8 967 aa15.97■□□□□ 0.15
CIITA-202ENST00000381835 ZBTB47Q9UFB7 747 aaPredicted RBP15.97■□□□□ 0.15
CIITA-202ENST00000381835 PLIN1O60240 522 aa15.97■□□□□ 0.15
CIITA-202ENST00000381835 CHL1O00533 1208 aa15.96■□□□□ 0.15
CIITA-202ENST00000381835 BCAR3O75815 825 aa15.96■□□□□ 0.15
CIITA-202ENST00000381835 IL2RBP14784 551 aa15.96■□□□□ 0.15
CIITA-202ENST00000381835 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.96■□□□□ 0.15
CIITA-202ENST00000381835 C8orf37Q96NL8 207 aa15.96■□□□□ 0.15
CIITA-202ENST00000381835 PARP4Q9UKK3 1724 aaKnown RBP15.96■□□□□ 0.15
CIITA-202ENST00000381835 LRRC37A3O60309 1634 aa15.95■□□□□ 0.14
CIITA-202ENST00000381835 TSPYL4Q9UJ04 414 aa15.95■□□□□ 0.14
CIITA-202ENST00000381835 OVOS2A0A0G2JMS6 1433 aa15.95■□□□□ 0.14
CIITA-202ENST00000381835 ELL2O00472 640 aaPredicted RBP15.95■□□□□ 0.14
CIITA-202ENST00000381835 BCL2L13Q9BXK5 485 aa15.95■□□□□ 0.14
CIITA-202ENST00000381835 PKD1L3Q7Z443 1732 aa15.95■□□□□ 0.14
CIITA-202ENST00000381835 RARSP54136 660 aaKnown RBP15.94■□□□□ 0.14
CIITA-202ENST00000381835 SPATA31A6Q5VVP1 1343 aa15.94■□□□□ 0.14
CIITA-202ENST00000381835 CEMIPQ8WUJ3 1361 aa15.94■□□□□ 0.14
CIITA-202ENST00000381835 NGLY1Q96IV0 654 aa15.94■□□□□ 0.14
CIITA-202ENST00000381835 RNMTO43148 476 aaKnown RBP15.94■□□□□ 0.14
CIITA-202ENST00000381835 CT47B1P0C2W7 299 aaPredicted RBP15.94■□□□□ 0.14
CIITA-202ENST00000381835 PHKG2P15735 406 aa15.94■□□□□ 0.14
CIITA-202ENST00000381835 TEFQ10587 303 aa15.94■□□□□ 0.14
CIITA-202ENST00000381835 IFNL2Q8IZJ0 200 aa15.94■□□□□ 0.14
CIITA-202ENST00000381835 TSPYL6Q8N831 410 aa15.94■□□□□ 0.14
CIITA-202ENST00000381835 NRAPQ86VF7 1730 aa15.93■□□□□ 0.14
CIITA-202ENST00000381835 CYP27B1O15528 508 aa15.93■□□□□ 0.14
CIITA-202ENST00000381835 TAF7Q15545 349 aaPredicted RBP15.93■□□□□ 0.14
CIITA-202ENST00000381835 ZCRB1Q8TBF4 217 aaKnown RBP15.93■□□□□ 0.14
CIITA-202ENST00000381835 C8orf58Q8NAV2 365 aa15.93■□□□□ 0.14
CIITA-202ENST00000381835 EXOC6Q8TAG9 804 aa15.93■□□□□ 0.14
CIITA-202ENST00000381835 NWD2Q9ULI1 1742 aa15.92■□□□□ 0.14
CIITA-202ENST00000381835 PLEKHG2Q9H7P9 1386 aa15.92■□□□□ 0.14
CIITA-202ENST00000381835 KRT24Q2M2I5 525 aa15.92■□□□□ 0.14
CIITA-202ENST00000381835 LRP6O75581 1613 aa15.92■□□□□ 0.14
CIITA-202ENST00000381835 TWISTNBQ3B726 338 aaPredicted RBP15.91■□□□□ 0.14
CIITA-202ENST00000381835 CCDC9Q9Y3X0 531 aaKnown RBP15.91■□□□□ 0.14
CIITA-202ENST00000381835 SLIT2O94813 1529 aa15.91■□□□□ 0.14
CIITA-202ENST00000381835 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.91■□□□□ 0.14
CIITA-202ENST00000381835 PCDH11XQ9BZA7 1347 aa15.9■□□□□ 0.14
CIITA-202ENST00000381835 PCDH11YQ9BZA8 1340 aa15.9■□□□□ 0.14
CIITA-202ENST00000381835 VAMP4O75379 141 aa15.9■□□□□ 0.14
CIITA-202ENST00000381835 RTL5Q5HYW3 569 aaPredicted RBP15.9■□□□□ 0.14
CIITA-202ENST00000381835 DDX54Q8TDD1 881 aaKnown RBP15.9■□□□□ 0.14
CIITA-202ENST00000381835 SCN11AQ9UI33 1791 aa15.9■□□□□ 0.14
CIITA-202ENST00000381835 FRAT1Q92837 279 aaPredicted RBP15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms