RNA–Protein interactions for RNA: ENST00000381575.6

SHOX-202, Transcript of short stature homeobox, humanhuman

TSL 1 (best) BASIC

Gene SHOX, Length 1,351 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-202ENST00000381575 TIMELESSQ9UNS1 1208 aa19.7■□□□□ 0.74
SHOX-202ENST00000381575 SYTL4Q96C24 671 aaPredicted RBP19.69■□□□□ 0.74
SHOX-202ENST00000381575 ATF5Q9Y2D1 282 aaPredicted RBP19.69■□□□□ 0.74
SHOX-202ENST00000381575 EMILIN1Q9Y6C2 1016 aa19.69■□□□□ 0.74
SHOX-202ENST00000381575 TUBGCP6Q96RT7 1819 aa19.68■□□□□ 0.74
SHOX-202ENST00000381575 SMG6Q86US8 1419 aaKnown RBP19.68■□□□□ 0.74
SHOX-202ENST00000381575 ZCRB1Q8TBF4 217 aaKnown RBP19.68■□□□□ 0.74
SHOX-202ENST00000381575 LRRC4BQ9NT99 713 aa19.68■□□□□ 0.74
SHOX-202ENST00000381575 ZNF827Q17R98 1081 aa19.67■□□□□ 0.74
SHOX-202ENST00000381575 FLT4P35916 1363 aa19.66■□□□□ 0.74
SHOX-202ENST00000381575 ANKRD26Q9UPS8 1709 aa19.66■□□□□ 0.74
SHOX-202ENST00000381575 PRIM1P49642 420 aaKnown RBP19.66■□□□□ 0.74
SHOX-202ENST00000381575 KCNQ4P56696 695 aa19.66■□□□□ 0.74
SHOX-202ENST00000381575 INSRP06213 1382 aa19.66■□□□□ 0.74
SHOX-202ENST00000381575 LY75O60449 1722 aa19.65■□□□□ 0.74
SHOX-202ENST00000381575 CCER1Q8TC90 406 aaPredicted RBP19.65■□□□□ 0.74
SHOX-202ENST00000381575 NSD2O96028 1365 aa19.65■□□□□ 0.74
SHOX-202ENST00000381575 PPM1GO15355 546 aaPredicted RBP19.64■□□□□ 0.73
SHOX-202ENST00000381575 PTGER2P43116 358 aa19.63■□□□□ 0.73
SHOX-202ENST00000381575 RAPGEF4Q8WZA2 1011 aa19.63■□□□□ 0.73
SHOX-202ENST00000381575 HSPA5P11021 654 aaKnown RBP19.62■□□□□ 0.73
SHOX-202ENST00000381575 TATP17735 454 aaPredicted RBP19.61■□□□□ 0.73
SHOX-202ENST00000381575 ITGB4P16144 1822 aa19.61■□□□□ 0.73
SHOX-202ENST00000381575 TOGARAM1Q9Y4F4 1720 aa19.61■□□□□ 0.73
SHOX-202ENST00000381575 QSER1Q2KHR3 1735 aa19.6■□□□□ 0.73
SHOX-202ENST00000381575 PKD1L3Q7Z443 1732 aa19.6■□□□□ 0.73
SHOX-202ENST00000381575 UTRNP46939 3433 aa19.6■□□□□ 0.73
SHOX-202ENST00000381575 KIF24Q5T7B8 1368 aa19.6■□□□□ 0.73
SHOX-202ENST00000381575 CGNL1Q0VF96 1302 aa19.59■□□□□ 0.73
SHOX-202ENST00000381575 TNNT2P45379 298 aaPredicted RBP19.59■□□□□ 0.73
SHOX-202ENST00000381575 EIF4G2P78344 907 aaKnown RBP eCLIP19.58■□□□□ 0.73
SHOX-202ENST00000381575 MTFR1LQ9H019 292 aa19.58■□□□□ 0.73
SHOX-202ENST00000381575 AKT1S1Q96B36 256 aa19.57■□□□□ 0.72
SHOX-202ENST00000381575 PCDH11XQ9BZA7 1347 aa19.56■□□□□ 0.72
SHOX-202ENST00000381575 PCDH11YQ9BZA8 1340 aa19.56■□□□□ 0.72
SHOX-202ENST00000381575 SLC27A3Q5K4L6 730 aa19.56■□□□□ 0.72
SHOX-202ENST00000381575 SGIP1Q9BQI5 828 aa19.56■□□□□ 0.72
SHOX-202ENST00000381575 CYP27B1O15528 508 aa19.55■□□□□ 0.72
SHOX-202ENST00000381575 FHDC1Q9C0D6 1143 aaPredicted RBP19.55■□□□□ 0.72
SHOX-202ENST00000381575 CCNL1Q9UK58 526 aaPredicted RBP19.55■□□□□ 0.72
SHOX-202ENST00000381575 TAF1LQ8IZX4 1826 aa19.54■□□□□ 0.72
SHOX-202ENST00000381575 C5P01031 1676 aa19.54■□□□□ 0.72
SHOX-202ENST00000381575 PNPLA7Q6ZV29 1317 aa19.54■□□□□ 0.72
SHOX-202ENST00000381575 POLKQ9UBT6 870 aa19.54■□□□□ 0.72
SHOX-202ENST00000381575 NCAPD2Q15021 1401 aa19.53■□□□□ 0.72
SHOX-202ENST00000381575 PANK3Q9H999 370 aa19.53■□□□□ 0.72
SHOX-202ENST00000381575 TFCP2L1Q9NZI6 479 aa19.53■□□□□ 0.72
SHOX-202ENST00000381575 GOLGB1Q14789 3259 aaKnown RBP19.53■□□□□ 0.72
SHOX-202ENST00000381575 WASHC2AQ641Q2 1341 aa19.52■□□□□ 0.72
SHOX-202ENST00000381575 MPRIPQ6WCQ1 1025 aa19.52■□□□□ 0.72
SHOX-202ENST00000381575 EYA1Q99502 592 aa19.52■□□□□ 0.72
SHOX-202ENST00000381575 YY1P25490 414 aa19.51■□□□□ 0.71
SHOX-202ENST00000381575 SYT17Q9BSW7 474 aa19.51■□□□□ 0.71
SHOX-202ENST00000381575 COL24A1Q17RW2 1714 aa19.51■□□□□ 0.71
SHOX-202ENST00000381575 DCAF8L1A6NGE4 600 aa19.5■□□□□ 0.71
SHOX-202ENST00000381575 ARXQ96QS3 562 aa19.5■□□□□ 0.71
SHOX-202ENST00000381575 EIF4A2Q14240 407 aaKnown RBP19.49■□□□□ 0.71
SHOX-202ENST00000381575 PALLDQ8WX93 1383 aa19.48■□□□□ 0.71
SHOX-202ENST00000381575 KLHL34Q8N239 644 aa19.48■□□□□ 0.71
SHOX-202ENST00000381575 MSH5O43196 834 aa19.47■□□□□ 0.71
SHOX-202ENST00000381575 SPG7Q9UQ90 795 aa19.46■□□□□ 0.71
SHOX-202ENST00000381575 CHD4Q14839 1912 aa19.46■□□□□ 0.71
SHOX-202ENST00000381575 C4BP0C0L5 1744 aa19.45■□□□□ 0.7
SHOX-202ENST00000381575 COL23A1Q86Y22 540 aaPredicted RBP19.44■□□□□ 0.7
SHOX-202ENST00000381575 PIGBQ92521 554 aa19.44■□□□□ 0.7
SHOX-202ENST00000381575 MSL1Q68DK7 614 aa19.44■□□□□ 0.7
SHOX-202ENST00000381575 SLC16A10Q8TF71 515 aa19.44■□□□□ 0.7
SHOX-202ENST00000381575 UBR3Q6ZT12 1888 aa19.43■□□□□ 0.7
SHOX-202ENST00000381575 POLD1P28340 1107 aa19.43■□□□□ 0.7
SHOX-202ENST00000381575 SMIM5Q71RC9 77 aa19.43■□□□□ 0.7
SHOX-202ENST00000381575 PHKG2P15735 406 aa19.42■□□□□ 0.7
SHOX-202ENST00000381575 NKX1-1Q15270 411 aaPredicted RBP19.42■□□□□ 0.7
SHOX-202ENST00000381575 MORC1Q86VD1 984 aa19.42■□□□□ 0.7
SHOX-202ENST00000381575 AMIGO3Q86WK7 504 aa19.41■□□□□ 0.7
SHOX-202ENST00000381575 IGSF1Q8N6C5 1336 aa19.41■□□□□ 0.7
SHOX-202ENST00000381575 MAP3K5Q99683 1374 aa19.41■□□□□ 0.7
SHOX-202ENST00000381575 TMOD3Q9NYL9 352 aa19.4■□□□□ 0.7
SHOX-202ENST00000381575 KIF7Q2M1P5 1343 aa19.4■□□□□ 0.7
SHOX-202ENST00000381575 IFNL2Q8IZJ0 200 aa19.39■□□□□ 0.69
SHOX-202ENST00000381575 NLGN2Q8NFZ4 835 aa19.39■□□□□ 0.69
SHOX-202ENST00000381575 SMARCC1Q92922 1105 aaPredicted RBP19.39■□□□□ 0.69
SHOX-202ENST00000381575 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.39■□□□□ 0.69
SHOX-202ENST00000381575 ASAP1Q9ULH1 1129 aa19.39■□□□□ 0.69
SHOX-202ENST00000381575 KNSTRNQ9Y448 316 aa19.39■□□□□ 0.69
SHOX-202ENST00000381575 AEBP1Q8IUX7 1158 aa19.38■□□□□ 0.69
SHOX-202ENST00000381575 PHF14O94880 888 aa19.37■□□□□ 0.69
SHOX-202ENST00000381575 PELP1Q8IZL8 1130 aaKnown RBP19.37■□□□□ 0.69
SHOX-202ENST00000381575 AK7Q96M32 723 aa19.37■□□□□ 0.69
SHOX-202ENST00000381575 LINC00116Q8NCU8 138 aa19.36■□□□□ 0.69
SHOX-202ENST00000381575 LOC102724428A0A0B4J2F2 783 aa19.35■□□□□ 0.69
SHOX-202ENST00000381575 SIK1P57059 783 aa19.35■□□□□ 0.69
SHOX-202ENST00000381575 ITPK1Q13572 414 aa19.34■□□□□ 0.69
SHOX-202ENST00000381575 GPR162Q16538 588 aa19.34■□□□□ 0.69
SHOX-202ENST00000381575 AMER1Q5JTC6 1135 aaPredicted RBP19.34■□□□□ 0.69
SHOX-202ENST00000381575 ZNF530Q6P9A1 599 aaPredicted RBP19.34■□□□□ 0.69
SHOX-202ENST00000381575 KDM6AO15550 1401 aaPredicted RBP19.34■□□□□ 0.69
SHOX-202ENST00000381575 VIRMAQ69YN4 1812 aaKnown RBP19.34■□□□□ 0.69
SHOX-202ENST00000381575 ATG3Q9NT62 314 aa19.33■□□□□ 0.69
SHOX-202ENST00000381575 CNGB1Q14028 1251 aaPredicted RBP19.32■□□□□ 0.68
SHOX-202ENST00000381575 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms