RNA–Protein interactions for RNA: ENST00000381089.7

VCX3A-201, Transcript of variable charge X-linked 3A, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VCX3A, Length 995 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-201ENST00000381089 TESK2Q96S53 571 aa22.45■■□□□ 1.18
VCX3A-201ENST00000381089 RTL1A6NKG5 1358 aa22.45■■□□□ 1.18
VCX3A-201ENST00000381089 KLHL34Q8N239 644 aa22.44■■□□□ 1.18
VCX3A-201ENST00000381089 SMG6Q86US8 1419 aaKnown RBP22.43■■□□□ 1.18
VCX3A-201ENST00000381089 DOT1LQ8TEK3 1739 aa22.43■■□□□ 1.18
VCX3A-201ENST00000381089 CGNL1Q0VF96 1302 aa22.42■■□□□ 1.18
VCX3A-201ENST00000381089 PNPLA7Q6ZV29 1317 aa22.42■■□□□ 1.18
VCX3A-201ENST00000381089 HMGB2P26583 209 aaKnown RBP22.41■■□□□ 1.18
VCX3A-201ENST00000381089 RAPGEF4Q8WZA2 1011 aa22.4■■□□□ 1.18
VCX3A-201ENST00000381089 CCNL1Q9UK58 526 aaPredicted RBP22.4■■□□□ 1.18
VCX3A-201ENST00000381089 USP47Q96K76 1375 aa22.39■■□□□ 1.18
VCX3A-201ENST00000381089 TMF1P82094 1093 aa22.39■■□□□ 1.17
VCX3A-201ENST00000381089 MEGF6O75095 1541 aa22.39■■□□□ 1.17
VCX3A-201ENST00000381089 LY75O60449 1722 aa22.38■■□□□ 1.17
VCX3A-201ENST00000381089 FBLN1P23142 703 aa22.38■■□□□ 1.17
VCX3A-201ENST00000381089 RGPD2P0DJD1 1756 aa22.38■■□□□ 1.17
VCX3A-201ENST00000381089 NSD2O96028 1365 aa22.38■■□□□ 1.17
VCX3A-201ENST00000381089 MSH5O43196 834 aa22.37■■□□□ 1.17
VCX3A-201ENST00000381089 KCNQ4P56696 695 aa22.37■■□□□ 1.17
VCX3A-201ENST00000381089 RRS1Q15050 365 aaKnown RBP22.37■■□□□ 1.17
VCX3A-201ENST00000381089 PELP1Q8IZL8 1130 aaKnown RBP22.37■■□□□ 1.17
VCX3A-201ENST00000381089 SHANK3Q9BYB0 1731 aa22.37■■□□□ 1.17
VCX3A-201ENST00000381089 TATP17735 454 aaPredicted RBP22.36■■□□□ 1.17
VCX3A-201ENST00000381089 COL24A1Q17RW2 1714 aa22.35■■□□□ 1.17
VCX3A-201ENST00000381089 CDCA8Q53HL2 280 aa22.35■■□□□ 1.17
VCX3A-201ENST00000381089 NBPF6Q5VWK0 638 aa22.35■■□□□ 1.17
VCX3A-201ENST00000381089 NBPF4Q96M43 638 aa22.35■■□□□ 1.17
VCX3A-201ENST00000381089 GGNBP2Q9H3C7 697 aa22.35■■□□□ 1.17
VCX3A-201ENST00000381089 TUBGCP6Q96RT7 1819 aa22.35■■□□□ 1.17
VCX3A-201ENST00000381089 FYB1O15117 783 aa22.34■■□□□ 1.17
VCX3A-201ENST00000381089 PCDH11XQ9BZA7 1347 aa22.33■■□□□ 1.17
VCX3A-201ENST00000381089 PCDH11YQ9BZA8 1340 aa22.33■■□□□ 1.17
VCX3A-201ENST00000381089 USHBP1Q8N6Y0 703 aa22.33■■□□□ 1.17
VCX3A-201ENST00000381089 KIF24Q5T7B8 1368 aa22.32■■□□□ 1.16
VCX3A-201ENST00000381089 INSRP06213 1382 aa22.31■■□□□ 1.16
VCX3A-201ENST00000381089 FLT4P35916 1363 aa22.31■■□□□ 1.16
VCX3A-201ENST00000381089 C1QTNF8P60827 252 aa22.31■■□□□ 1.16
VCX3A-201ENST00000381089 SENP3-EIF4A1A0A087X0R7 540 aa22.3■■□□□ 1.16
VCX3A-201ENST00000381089 GRIN3BO60391 1043 aa22.3■■□□□ 1.16
VCX3A-201ENST00000381089 COL23A1Q86Y22 540 aaPredicted RBP22.29■■□□□ 1.16
VCX3A-201ENST00000381089 FLAD1Q8NFF5 587 aa22.29■■□□□ 1.16
VCX3A-201ENST00000381089 NLGN2Q8NFZ4 835 aa22.29■■□□□ 1.16
VCX3A-201ENST00000381089 KIF20BQ96Q89 1820 aa22.29■■□□□ 1.16
VCX3A-201ENST00000381089 GOLGB1Q14789 3259 aaKnown RBP22.28■■□□□ 1.16
VCX3A-201ENST00000381089 HSP90AB2PQ58FF8 381 aa22.28■■□□□ 1.16
VCX3A-201ENST00000381089 GIGYF1O75420 1035 aaPredicted RBP22.27■■□□□ 1.16
VCX3A-201ENST00000381089 PALLDQ8WX93 1383 aa22.26■■□□□ 1.15
VCX3A-201ENST00000381089 MPRIPQ6WCQ1 1025 aa22.26■■□□□ 1.15
VCX3A-201ENST00000381089 C5P01031 1676 aa22.26■■□□□ 1.15
VCX3A-201ENST00000381089 SMARCC1Q92922 1105 aaPredicted RBP22.25■■□□□ 1.15
VCX3A-201ENST00000381089 MSL1Q68DK7 614 aa22.24■■□□□ 1.15
VCX3A-201ENST00000381089 AK7Q96M32 723 aa22.22■■□□□ 1.15
VCX3A-201ENST00000381089 CD2APQ9Y5K6 639 aa22.22■■□□□ 1.15
VCX3A-201ENST00000381089 NSD3Q9BZ95 1437 aa22.21■■□□□ 1.15
VCX3A-201ENST00000381089 PPM1GO15355 546 aaPredicted RBP22.2■■□□□ 1.14
VCX3A-201ENST00000381089 CYP27B1O15528 508 aa22.2■■□□□ 1.14
VCX3A-201ENST00000381089 SPG7Q9UQ90 795 aa22.2■■□□□ 1.14
VCX3A-201ENST00000381089 YBX3P16989 372 aaKnown RBP eCLIP22.19■■□□□ 1.14
VCX3A-201ENST00000381089 EMILIN1Q9Y6C2 1016 aa22.19■■□□□ 1.14
VCX3A-201ENST00000381089 TAF1LQ8IZX4 1826 aa22.19■■□□□ 1.14
VCX3A-201ENST00000381089 PKD1L3Q7Z443 1732 aa22.17■■□□□ 1.14
VCX3A-201ENST00000381089 C4BP0C0L5 1744 aa22.17■■□□□ 1.14
VCX3A-201ENST00000381089 ITGB4P16144 1822 aa22.16■■□□□ 1.14
VCX3A-201ENST00000381089 NKX1-1Q15270 411 aaPredicted RBP22.15■■□□□ 1.14
VCX3A-201ENST00000381089 CARD14Q9BXL6 1004 aa22.15■■□□□ 1.14
VCX3A-201ENST00000381089 TOGARAM1Q9Y4F4 1720 aa22.14■■□□□ 1.14
VCX3A-201ENST00000381089 PIGBQ92521 554 aa22.14■■□□□ 1.13
VCX3A-201ENST00000381089 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.14■■□□□ 1.13
VCX3A-201ENST00000381089 NCAPD2Q15021 1401 aa22.14■■□□□ 1.13
VCX3A-201ENST00000381089 WASHC2AQ641Q2 1341 aa22.13■■□□□ 1.13
VCX3A-201ENST00000381089 PHF14O94880 888 aa22.13■■□□□ 1.13
VCX3A-201ENST00000381089 SSFA2P28290 1259 aa22.13■■□□□ 1.13
VCX3A-201ENST00000381089 TMOD3Q9NYL9 352 aa22.13■■□□□ 1.13
VCX3A-201ENST00000381089 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.12■■□□□ 1.13
VCX3A-201ENST00000381089 LOC102724428A0A0B4J2F2 783 aa22.11■■□□□ 1.13
VCX3A-201ENST00000381089 SIK1P57059 783 aa22.11■■□□□ 1.13
VCX3A-201ENST00000381089 ANKRD26Q9UPS8 1709 aa22.11■■□□□ 1.13
VCX3A-201ENST00000381089 TRIM26Q12899 539 aaPredicted RBP22.1■■□□□ 1.13
VCX3A-201ENST00000381089 IFNL2Q8IZJ0 200 aa22.1■■□□□ 1.13
VCX3A-201ENST00000381089 ATP10DQ9P241 1426 aa22.1■■□□□ 1.13
VCX3A-201ENST00000381089 UBR3Q6ZT12 1888 aa22.09■■□□□ 1.13
VCX3A-201ENST00000381089 EYA1Q99502 592 aa22.09■■□□□ 1.13
VCX3A-201ENST00000381089 GPBP1L1Q9HC44 474 aaPredicted RBP22.09■■□□□ 1.13
VCX3A-201ENST00000381089 TIMELESSQ9UNS1 1208 aa22.09■■□□□ 1.13
VCX3A-201ENST00000381089 MAP2P11137 1827 aaKnown RBP22.08■■□□□ 1.13
VCX3A-201ENST00000381089 IGSF1Q8N6C5 1336 aa22.07■■□□□ 1.12
VCX3A-201ENST00000381089 ATP6V1AP38606 617 aa22.07■■□□□ 1.12
VCX3A-201ENST00000381089 LINC00116Q8NCU8 138 aa22.07■■□□□ 1.12
VCX3A-201ENST00000381089 GNPATO15228 680 aa22.06■■□□□ 1.12
VCX3A-201ENST00000381089 PHKG2P15735 406 aa22.06■■□□□ 1.12
VCX3A-201ENST00000381089 PLEKHG2Q9H7P9 1386 aa22.06■■□□□ 1.12
VCX3A-201ENST00000381089 AMIGO3Q86WK7 504 aa22.05■■□□□ 1.12
VCX3A-201ENST00000381089 POLR3GLQ9BT43 218 aa22.05■■□□□ 1.12
VCX3A-201ENST00000381089 POLKQ9UBT6 870 aa22.05■■□□□ 1.12
VCX3A-201ENST00000381089 ASAP1Q9ULH1 1129 aa22.05■■□□□ 1.12
VCX3A-201ENST00000381089 HSP90AB1P08238 724 aaKnown RBP22.02■■□□□ 1.12
VCX3A-201ENST00000381089 SMIM5Q71RC9 77 aa22.02■■□□□ 1.12
VCX3A-201ENST00000381089 ADCY9O60503 1353 aa22.01■■□□□ 1.11
VCX3A-201ENST00000381089 TNNT2P45379 298 aaPredicted RBP22.01■■□□□ 1.11
VCX3A-201ENST00000381089 ITPK1Q13572 414 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms