RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 CEBPAP49715 358 aaPredicted RBP24.36■■□□□ 1.49
SHROOM1-202ENST00000378676 SNX21Q969T3 373 aa24.36■■□□□ 1.49
SHROOM1-202ENST00000378676 KIAA0232Q92628 1395 aa24.36■■□□□ 1.49
SHROOM1-202ENST00000378676 PIK3C2AO00443 1686 aa24.36■■□□□ 1.49
SHROOM1-202ENST00000378676 GSPT1P15170 499 aaKnown RBP24.35■■□□□ 1.49
SHROOM1-202ENST00000378676 DDIT3P35638 169 aa24.35■■□□□ 1.49
SHROOM1-202ENST00000378676 DIP2AQ14689 1571 aa24.35■■□□□ 1.49
SHROOM1-202ENST00000378676 MAP3K19Q56UN5 1328 aa24.34■■□□□ 1.49
SHROOM1-202ENST00000378676 DCTPP1Q9H773 170 aa24.34■■□□□ 1.49
SHROOM1-202ENST00000378676 ARHGEF10O15013 1369 aa24.33■■□□□ 1.49
SHROOM1-202ENST00000378676 PLEKHM2Q8IWE5 1019 aa24.32■■□□□ 1.48
SHROOM1-202ENST00000378676 CEP170BQ9Y4F5 1589 aaPredicted RBP24.32■■□□□ 1.48
SHROOM1-202ENST00000378676 FOXO3O43524 673 aa24.32■■□□□ 1.48
SHROOM1-202ENST00000378676 CD2BP2O95400 341 aaKnown RBP24.32■■□□□ 1.48
SHROOM1-202ENST00000378676 MARF1Q9Y4F3 1742 aaKnown RBP24.32■■□□□ 1.48
SHROOM1-202ENST00000378676 ANKRD44Q8N8A2 993 aa24.31■■□□□ 1.48
SHROOM1-202ENST00000378676 CDC45O75419 566 aa24.3■■□□□ 1.48
SHROOM1-202ENST00000378676 RTL1A6NKG5 1358 aa24.3■■□□□ 1.48
SHROOM1-202ENST00000378676 SLIT1O75093 1534 aa24.3■■□□□ 1.48
SHROOM1-202ENST00000378676 MIS18AQ9NYP9 233 aa24.3■■□□□ 1.48
SHROOM1-202ENST00000378676 CEP85Q6P2H3 762 aa24.29■■□□□ 1.48
SHROOM1-202ENST00000378676 C16orf71Q8IYS4 520 aaPredicted RBP24.29■■□□□ 1.48
SHROOM1-202ENST00000378676 ARHGAP23Q9P227 1491 aa24.29■■□□□ 1.48
SHROOM1-202ENST00000378676 LRRC37A3O60309 1634 aa24.29■■□□□ 1.48
SHROOM1-202ENST00000378676 RBM42Q9BTD8 480 aaKnown RBP24.29■■□□□ 1.48
SHROOM1-202ENST00000378676 AMOTL2Q9Y2J4 779 aa24.29■■□□□ 1.48
SHROOM1-202ENST00000378676 FAM208AQ9UK61 1670 aaKnown RBP24.28■■□□□ 1.48
SHROOM1-202ENST00000378676 HAP1P54257 671 aaPredicted RBP24.28■■□□□ 1.48
SHROOM1-202ENST00000378676 MTHFSDQ2M296 383 aaKnown RBP24.28■■□□□ 1.48
SHROOM1-202ENST00000378676 PTPRCP08575 1304 aa24.28■■□□□ 1.48
SHROOM1-202ENST00000378676 TTC21AQ8NDW8 1320 aa24.28■■□□□ 1.48
SHROOM1-202ENST00000378676 SBNO1A3KN83 1393 aa24.28■■□□□ 1.48
SHROOM1-202ENST00000378676 HSP90AB1P08238 724 aaKnown RBP24.28■■□□□ 1.48
SHROOM1-202ENST00000378676 MEIS3Q99687 375 aa24.28■■□□□ 1.48
SHROOM1-202ENST00000378676 FLT4P35916 1363 aa24.27■■□□□ 1.48
SHROOM1-202ENST00000378676 OTUD7AQ8TE49 926 aaPredicted RBP24.27■■□□□ 1.48
SHROOM1-202ENST00000378676 TTC22Q5TAA0 569 aa24.27■■□□□ 1.48
SHROOM1-202ENST00000378676 XRN1Q8IZH2 1706 aaKnown RBP24.26■■□□□ 1.47
SHROOM1-202ENST00000378676 KDRP35968 1356 aa24.26■■□□□ 1.47
SHROOM1-202ENST00000378676 GZF1Q9H116 711 aaPredicted RBP24.25■■□□□ 1.47
SHROOM1-202ENST00000378676 SLC4A2P04920 1241 aa24.24■■□□□ 1.47
SHROOM1-202ENST00000378676 RPAP2Q8IXW5 612 aaPredicted RBP24.24■■□□□ 1.47
SHROOM1-202ENST00000378676 EID1Q9Y6B2 187 aa24.24■■□□□ 1.47
SHROOM1-202ENST00000378676 TRAK2O60296 914 aa24.24■■□□□ 1.47
SHROOM1-202ENST00000378676 PLPPR3Q6T4P5 718 aa24.24■■□□□ 1.47
SHROOM1-202ENST00000378676 G2E3Q7L622 706 aa24.24■■□□□ 1.47
SHROOM1-202ENST00000378676 AK9Q5TCS8 1911 aa24.24■■□□□ 1.47
SHROOM1-202ENST00000378676 SMARCA5O60264 1052 aaPredicted RBP24.23■■□□□ 1.47
SHROOM1-202ENST00000378676 TSPYL4Q9UJ04 414 aa24.23■■□□□ 1.47
SHROOM1-202ENST00000378676 IGSF1Q8N6C5 1336 aa24.22■■□□□ 1.47
SHROOM1-202ENST00000378676 L1TD1Q5T7N2 865 aaKnown RBP24.22■■□□□ 1.47
SHROOM1-202ENST00000378676 ARXQ96QS3 562 aa24.22■■□□□ 1.47
SHROOM1-202ENST00000378676 EYA1Q99502 592 aa24.22■■□□□ 1.47
SHROOM1-202ENST00000378676 FOXD4L1Q9NU39 408 aa24.22■■□□□ 1.47
SHROOM1-202ENST00000378676 APBB1O00213 710 aa24.22■■□□□ 1.47
SHROOM1-202ENST00000378676 NGDNQ8NEJ9 315 aaKnown RBP24.22■■□□□ 1.47
SHROOM1-202ENST00000378676 TNPO1Q92973 898 aaKnown RBP24.22■■□□□ 1.47
SHROOM1-202ENST00000378676 K7ELQ4 463 aaPredicted RBP24.21■■□□□ 1.47
SHROOM1-202ENST00000378676 UBE2Q2Q8WVN8 375 aa24.21■■□□□ 1.47
SHROOM1-202ENST00000378676 TUBGCP6Q96RT7 1819 aa24.2■■□□□ 1.46
SHROOM1-202ENST00000378676 RTF1Q92541 710 aaKnown RBP24.2■■□□□ 1.46
SHROOM1-202ENST00000378676 CIZ1Q9ULV3 898 aaPredicted RBP24.2■■□□□ 1.46
SHROOM1-202ENST00000378676 TBX22Q9Y458 520 aa24.2■■□□□ 1.46
SHROOM1-202ENST00000378676 USP54Q70EL1 1684 aa24.2■■□□□ 1.46
SHROOM1-202ENST00000378676 NWD1Q149M9 1564 aa24.2■■□□□ 1.46
SHROOM1-202ENST00000378676 ADAMTSL3P82987 1691 aa24.2■■□□□ 1.46
SHROOM1-202ENST00000378676 FSD2A1L4K1 749 aa24.2■■□□□ 1.46
SHROOM1-202ENST00000378676 DDX11L8A8MPP1 907 aa24.2■■□□□ 1.46
SHROOM1-202ENST00000378676 F6X3S4 739 aa24.2■■□□□ 1.46
SHROOM1-202ENST00000378676 AMPHP49418 695 aa24.19■■□□□ 1.46
SHROOM1-202ENST00000378676 N4BP2Q86UW6 1770 aaPredicted RBP24.19■■□□□ 1.46
SHROOM1-202ENST00000378676 RAB3GAP1Q15042 981 aa24.18■■□□□ 1.46
SHROOM1-202ENST00000378676 GAS2L2Q8NHY3 880 aa24.18■■□□□ 1.46
SHROOM1-202ENST00000378676 CACNA1FO60840 1977 aa24.17■■□□□ 1.46
SHROOM1-202ENST00000378676 SLC4A10Q6U841 1118 aa24.17■■□□□ 1.46
SHROOM1-202ENST00000378676 GOLGA6L3A6NEY3 463 aa24.16■■□□□ 1.46
SHROOM1-202ENST00000378676 SDSP20132 328 aa24.16■■□□□ 1.46
SHROOM1-202ENST00000378676 HSP90AA1P07900 732 aaKnown RBP24.15■■□□□ 1.46
SHROOM1-202ENST00000378676 XRCC6P12956 609 aaKnown RBP eCLIP24.15■■□□□ 1.46
SHROOM1-202ENST00000378676 THEMISQ8N1K5 641 aaPredicted RBP24.15■■□□□ 1.46
SHROOM1-202ENST00000378676 LTN1O94822 1766 aa24.14■■□□□ 1.46
SHROOM1-202ENST00000378676 NUTM2GQ5VZR2 741 aa24.14■■□□□ 1.45
SHROOM1-202ENST00000378676 USP26Q9BXU7 913 aa24.14■■□□□ 1.45
SHROOM1-202ENST00000378676 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.14■■□□□ 1.45
SHROOM1-202ENST00000378676 NLRP6P59044 892 aa24.13■■□□□ 1.45
SHROOM1-202ENST00000378676 ANKARQ7Z5J8 1434 aa24.12■■□□□ 1.45
SHROOM1-202ENST00000378676 CCT4P50991 539 aaKnown RBP24.12■■□□□ 1.45
SHROOM1-202ENST00000378676 FAM43AQ8N2R8 423 aa24.11■■□□□ 1.45
SHROOM1-202ENST00000378676 PANK2Q9BZ23 570 aa24.11■■□□□ 1.45
SHROOM1-202ENST00000378676 HOXC9P31274 260 aa24.11■■□□□ 1.45
SHROOM1-202ENST00000378676 RABEP1Q15276 862 aa24.1■■□□□ 1.45
SHROOM1-202ENST00000378676 SSFA2P28290 1259 aa24.1■■□□□ 1.45
SHROOM1-202ENST00000378676 GBP4Q96PP9 640 aa24.1■■□□□ 1.45
SHROOM1-202ENST00000378676 HMMRO75330 724 aa24.09■■□□□ 1.45
SHROOM1-202ENST00000378676 KCNA6P17658 529 aa24.08■■□□□ 1.45
SHROOM1-202ENST00000378676 NECTIN2Q92692 538 aa24.08■■□□□ 1.45
SHROOM1-202ENST00000378676 STK31Q9BXU1 1019 aa24.08■■□□□ 1.45
SHROOM1-202ENST00000378676 SETD1BQ9UPS6 1966 aaKnown RBP24.08■■□□□ 1.45
SHROOM1-202ENST00000378676 GNAT3A8MTJ3 354 aa24.07■■□□□ 1.44
SHROOM1-202ENST00000378676 EIF5BO60841 1220 aaKnown RBP24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms