RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 KIAA0754O94854 1291 aa13.92□□□□□ -0.18
NPHP4-202ENST00000378161 RBM27Q9P2N5 1060 aaKnown RBP13.92□□□□□ -0.18
NPHP4-202ENST00000378161 GOLGA6L19H0YKK7 550 aa13.92□□□□□ -0.18
NPHP4-202ENST00000378161 HMMRO75330 724 aa13.92□□□□□ -0.18
NPHP4-202ENST00000378161 EIF3JO75822 258 aaKnown RBP13.92□□□□□ -0.18
NPHP4-202ENST00000378161 SMC2O95347 1197 aa13.92□□□□□ -0.18
NPHP4-202ENST00000378161 NBPF9Q3BBW0 867 aa13.92□□□□□ -0.18
NPHP4-202ENST00000378161 GORABQ5T7V8 394 aa13.92□□□□□ -0.18
NPHP4-202ENST00000378161 TRIM5Q9C035 493 aa13.92□□□□□ -0.18
NPHP4-202ENST00000378161 HDGFP51858 240 aaKnown RBP13.92□□□□□ -0.18
NPHP4-202ENST00000378161 ANKRD45Q5TZF3 282 aa13.92□□□□□ -0.18
NPHP4-202ENST00000378161 RRP15Q9Y3B9 282 aaKnown RBP13.92□□□□□ -0.18
NPHP4-202ENST00000378161 SEC24BO95487 1268 aa13.92□□□□□ -0.18
NPHP4-202ENST00000378161 SEMA3FQ13275 785 aa13.92□□□□□ -0.18
NPHP4-202ENST00000378161 CCDC34Q96HJ3 373 aa13.92□□□□□ -0.18
NPHP4-202ENST00000378161 CWC22Q9HCG8 908 aaKnown RBP13.92□□□□□ -0.18
NPHP4-202ENST00000378161 IBSPP21815 317 aaPredicted RBP13.91□□□□□ -0.18
NPHP4-202ENST00000378161 C17orf53Q8N3J3 647 aaPredicted RBP13.91□□□□□ -0.18
NPHP4-202ENST00000378161 JARID2Q92833 1246 aaPredicted RBP13.91□□□□□ -0.18
NPHP4-202ENST00000378161 PPP1R12AO14974 1030 aaPredicted RBP13.91□□□□□ -0.18
NPHP4-202ENST00000378161 TCP11L2Q8N4U5 519 aa13.91□□□□□ -0.18
NPHP4-202ENST00000378161 CFAP43Q8NDM7 1665 aa13.91□□□□□ -0.18
NPHP4-202ENST00000378161 IFT140Q96RY7 1462 aa13.91□□□□□ -0.18
NPHP4-202ENST00000378161 UGGT2Q9NYU1 1516 aa13.91□□□□□ -0.18
NPHP4-202ENST00000378161 A0A1B0GUA9 196 aa13.9□□□□□ -0.18
NPHP4-202ENST00000378161 IPO7O95373 1038 aaKnown RBP13.9□□□□□ -0.18
NPHP4-202ENST00000378161 PRR29P0C7W0 189 aa13.9□□□□□ -0.18
NPHP4-202ENST00000378161 KIAA1328Q86T90 577 aa13.9□□□□□ -0.18
NPHP4-202ENST00000378161 PLEKHH2Q8IVE3 1493 aa13.9□□□□□ -0.18
NPHP4-202ENST00000378161 SCAPERQ9BY12 1400 aa13.9□□□□□ -0.18
NPHP4-202ENST00000378161 BCAR3O75815 825 aa13.9□□□□□ -0.18
NPHP4-202ENST00000378161 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.9□□□□□ -0.18
NPHP4-202ENST00000378161 CAMSAP2Q08AD1 1489 aa13.9□□□□□ -0.18
NPHP4-202ENST00000378161 KIF3CO14782 793 aa13.9□□□□□ -0.19
NPHP4-202ENST00000378161 CEP135Q66GS9 1140 aa13.9□□□□□ -0.19
NPHP4-202ENST00000378161 ZNF710Q8N1W2 664 aa13.9□□□□□ -0.19
NPHP4-202ENST00000378161 NEFHP12036 1026 aa13.89□□□□□ -0.19
NPHP4-202ENST00000378161 CAPN2P17655 700 aa13.89□□□□□ -0.19
NPHP4-202ENST00000378161 STK31Q9BXU1 1019 aa13.89□□□□□ -0.19
NPHP4-202ENST00000378161 TRDNQ13061 729 aa13.89□□□□□ -0.19
NPHP4-202ENST00000378161 FKBP5Q13451 457 aaPredicted RBP13.89□□□□□ -0.19
NPHP4-202ENST00000378161 RBBP5Q15291 538 aaKnown RBP13.89□□□□□ -0.19
NPHP4-202ENST00000378161 IRAK4Q9NWZ3 460 aa13.89□□□□□ -0.19
NPHP4-202ENST00000378161 CCDC97Q96F63 343 aaPredicted RBP13.89□□□□□ -0.19
NPHP4-202ENST00000378161 CENPHQ9H3R5 247 aa13.89□□□□□ -0.19
NPHP4-202ENST00000378161 SLFN5Q08AF3 891 aa13.88□□□□□ -0.19
NPHP4-202ENST00000378161 SMC5Q8IY18 1101 aa13.88□□□□□ -0.19
NPHP4-202ENST00000378161 MYO6Q9UM54 1294 aa13.88□□□□□ -0.19
NPHP4-202ENST00000378161 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.88□□□□□ -0.19
NPHP4-202ENST00000378161 MORC2Q9Y6X9 1032 aaPredicted RBP13.88□□□□□ -0.19
NPHP4-202ENST00000378161 SYCP1Q15431 976 aa13.88□□□□□ -0.19
NPHP4-202ENST00000378161 NUTM2DQ5VT03 806 aaPredicted RBP13.88□□□□□ -0.19
NPHP4-202ENST00000378161 NBPF11Q86T75 865 aa13.88□□□□□ -0.19
NPHP4-202ENST00000378161 SPATS2LQ9NUQ6 558 aaKnown RBP13.88□□□□□ -0.19
NPHP4-202ENST00000378161 CTNNA3Q9UI47 895 aa13.88□□□□□ -0.19
NPHP4-202ENST00000378161 ARHGAP5Q13017 1502 aa13.88□□□□□ -0.19
NPHP4-202ENST00000378161 CFAP70Q5T0N1 1121 aa13.87□□□□□ -0.19
NPHP4-202ENST00000378161 ATP2B1P20020 1258 aa13.87□□□□□ -0.19
NPHP4-202ENST00000378161 SNAPC4Q5SXM2 1469 aa13.87□□□□□ -0.19
NPHP4-202ENST00000378161 MTHFSP49914 203 aa13.87□□□□□ -0.19
NPHP4-202ENST00000378161 GOLGA5Q8TBA6 731 aa13.87□□□□□ -0.19
NPHP4-202ENST00000378161 RNF217Q8TC41 542 aa13.87□□□□□ -0.19
NPHP4-202ENST00000378161 NBPF3Q9H094 633 aa13.87□□□□□ -0.19
NPHP4-202ENST00000378161 DIAPH1O60610 1272 aaKnown RBP13.86□□□□□ -0.19
NPHP4-202ENST00000378161 SLU7O95391 586 aaKnown RBP13.86□□□□□ -0.19
NPHP4-202ENST00000378161 ATP6V1DQ9Y5K8 247 aa13.86□□□□□ -0.19
NPHP4-202ENST00000378161 ANKRD18AQ8IVF6 992 aa13.86□□□□□ -0.19
NPHP4-202ENST00000378161 LAMC3Q9Y6N6 1575 aa13.86□□□□□ -0.19
NPHP4-202ENST00000378161 IBTKQ9P2D0 1353 aaPredicted RBP13.86□□□□□ -0.19
NPHP4-202ENST00000378161 KDM2BQ8NHM5 1336 aa13.86□□□□□ -0.19
NPHP4-202ENST00000378161 BECN2A8MW95 431 aa13.85□□□□□ -0.19
NPHP4-202ENST00000378161 MAGEA9P43362 315 aa13.85□□□□□ -0.19
NPHP4-202ENST00000378161 NAP1L1P55209 391 aaKnown RBP13.85□□□□□ -0.19
NPHP4-202ENST00000378161 MMS22LQ6ZRQ5 1243 aa13.85□□□□□ -0.19
NPHP4-202ENST00000378161 ERCC4Q92889 916 aaPredicted RBP13.85□□□□□ -0.19
NPHP4-202ENST00000378161 ERO1AQ96HE7 468 aa13.85□□□□□ -0.19
NPHP4-202ENST00000378161 MED4Q9NPJ6 270 aa13.85□□□□□ -0.19
NPHP4-202ENST00000378161 WDR63Q8IWG1 891 aa13.85□□□□□ -0.19
NPHP4-202ENST00000378161 NOC3LQ8WTT2 800 aaKnown RBP13.85□□□□□ -0.19
NPHP4-202ENST00000378161 ELL2O00472 640 aaPredicted RBP13.84□□□□□ -0.19
NPHP4-202ENST00000378161 PDLIM2Q96JY6 352 aa13.84□□□□□ -0.19
NPHP4-202ENST00000378161 LNPKQ9C0E8 428 aa13.84□□□□□ -0.19
NPHP4-202ENST00000378161 TCOF1Q13428 1488 aaKnown RBP13.84□□□□□ -0.19
NPHP4-202ENST00000378161 ERC1Q8IUD2 1116 aa13.84□□□□□ -0.19
NPHP4-202ENST00000378161 RPUSD2Q8IZ73 545 aaKnown RBP13.84□□□□□ -0.19
NPHP4-202ENST00000378161 TULP2O00295 520 aa13.84□□□□□ -0.19
NPHP4-202ENST00000378161 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.84□□□□□ -0.19
NPHP4-202ENST00000378161 API5Q9BZZ5 524 aaKnown RBP13.84□□□□□ -0.19
NPHP4-202ENST00000378161 VEZTQ9HBM0 779 aa13.84□□□□□ -0.19
NPHP4-202ENST00000378161 GYS2P54840 703 aa13.83□□□□□ -0.19
NPHP4-202ENST00000378161 SNX21Q969T3 373 aa13.83□□□□□ -0.19
NPHP4-202ENST00000378161 TMX4Q9H1E5 349 aaPredicted RBP13.83□□□□□ -0.19
NPHP4-202ENST00000378161 GCKP35557 465 aa13.83□□□□□ -0.2
NPHP4-202ENST00000378161 ARMCX6Q7L4S7 300 aa13.83□□□□□ -0.2
NPHP4-202ENST00000378161 URB2Q14146 1524 aaKnown RBP13.83□□□□□ -0.2
NPHP4-202ENST00000378161 GOLGA6L10A6NI86 522 aa13.83□□□□□ -0.2
NPHP4-202ENST00000378161 GBP2P32456 591 aaPredicted RBP13.83□□□□□ -0.2
NPHP4-202ENST00000378161 CYP2C19P33261 490 aa13.83□□□□□ -0.2
NPHP4-202ENST00000378161 JAKMIP3Q5VZ66 844 aa13.83□□□□□ -0.2
NPHP4-202ENST00000378161 DYDC1Q8WWB3 177 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms