RNA–Protein interactions for RNA: ENST00000378034.7

CKAP2-202, Transcript of cytoskeleton associated protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CKAP2, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP2-202ENST00000378034 CCDC125Q86Z20 511 aa17.78■□□□□ 0.44
CKAP2-202ENST00000378034 MARCH10Q8NA82 808 aaPredicted RBP17.78■□□□□ 0.44
CKAP2-202ENST00000378034 NUDCQ9Y266 331 aa17.78■□□□□ 0.44
CKAP2-202ENST00000378034 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.77■□□□□ 0.446e-7■■■■□ 20.8
CKAP2-202ENST00000378034 PKD1L3Q7Z443 1732 aa17.77■□□□□ 0.44
CKAP2-202ENST00000378034 SULT6B1Q6IMI4 303 aa17.77■□□□□ 0.43
CKAP2-202ENST00000378034 UPF1Q92900 1129 aaKnown RBP eCLIP17.76■□□□□ 0.43
CKAP2-202ENST00000378034 SHANK3Q9BYB0 1731 aa17.76■□□□□ 0.43
CKAP2-202ENST00000378034 FAM182BQ5T319 152 aa17.75■□□□□ 0.43
CKAP2-202ENST00000378034 SPG7Q9UQ90 795 aa17.75■□□□□ 0.43
CKAP2-202ENST00000378034 PCDH11XQ9BZA7 1347 aa17.74■□□□□ 0.43
CKAP2-202ENST00000378034 PCDH11YQ9BZA8 1340 aa17.74■□□□□ 0.43
CKAP2-202ENST00000378034 U2SURPO15042 1029 aaKnown RBP17.74■□□□□ 0.43
CKAP2-202ENST00000378034 AEBP1Q8IUX7 1158 aa17.73■□□□□ 0.43
CKAP2-202ENST00000378034 DDX54Q8TDD1 881 aaKnown RBP17.73■□□□□ 0.43
CKAP2-202ENST00000378034 ANP32CO43423 234 aa17.73■□□□□ 0.43
CKAP2-202ENST00000378034 AMOTQ4VCS5 1084 aa17.73■□□□□ 0.43
CKAP2-202ENST00000378034 PLEKHO1Q53GL0 409 aaPredicted RBP17.72■□□□□ 0.43
CKAP2-202ENST00000378034 SBF2Q86WG5 1849 aa17.72■□□□□ 0.43
CKAP2-202ENST00000378034 HMOX1P09601 288 aa17.71■□□□□ 0.43
CKAP2-202ENST00000378034 SF3B2Q13435 895 aaKnown RBP17.7■□□□□ 0.42
CKAP2-202ENST00000378034 EP400Q96L91 3159 aa17.69■□□□□ 0.42
CKAP2-202ENST00000378034 U2AF1L5P0DN76 240 aaPredicted RBP17.69■□□□□ 0.42
CKAP2-202ENST00000378034 U2AF1Q01081 240 aaKnown RBP eCLIP17.69■□□□□ 0.42
CKAP2-202ENST00000378034 CYP27B1O15528 508 aa17.68■□□□□ 0.42
CKAP2-202ENST00000378034 FCHSD2O94868 740 aa17.68■□□□□ 0.42
CKAP2-202ENST00000378034 TRIM37O94972 964 aa17.68■□□□□ 0.42
CKAP2-202ENST00000378034 IFNL2Q8IZJ0 200 aa17.68■□□□□ 0.42
CKAP2-202ENST00000378034 NKX1-1Q15270 411 aaPredicted RBP17.68■□□□□ 0.42
CKAP2-202ENST00000378034 BCL11BQ9C0K0 894 aaPredicted RBP17.68■□□□□ 0.42
CKAP2-202ENST00000378034 TNS1Q9HBL0 1735 aaKnown RBP17.67■□□□□ 0.42
CKAP2-202ENST00000378034 NHSQ6T4R5 1651 aa17.67■□□□□ 0.42
CKAP2-202ENST00000378034 PHKG2P15735 406 aa17.66■□□□□ 0.42
CKAP2-202ENST00000378034 RSPH6AQ9H0K4 717 aa17.66■□□□□ 0.42
CKAP2-202ENST00000378034 HSP90AB1P08238 724 aaKnown RBP17.66■□□□□ 0.42
CKAP2-202ENST00000378034 PNNQ9H307 717 aaKnown RBP17.66■□□□□ 0.42
CKAP2-202ENST00000378034 ZNF530Q6P9A1 599 aaPredicted RBP17.65■□□□□ 0.42
CKAP2-202ENST00000378034 BAG6P46379 1132 aa17.64■□□□□ 0.41
CKAP2-202ENST00000378034 DOT1LQ8TEK3 1739 aa17.64■□□□□ 0.41
CKAP2-202ENST00000378034 PRKAR2BP31323 418 aa17.64■□□□□ 0.41
CKAP2-202ENST00000378034 C1orf141Q5JVX7 400 aa17.64■□□□□ 0.41
CKAP2-202ENST00000378034 AKAP4Q5JQC9 854 aa17.62■□□□□ 0.41
CKAP2-202ENST00000378034 ACSBG1Q96GR2 724 aa17.62■□□□□ 0.41
CKAP2-202ENST00000378034 APBA3O96018 575 aa17.62■□□□□ 0.41
CKAP2-202ENST00000378034 GAS2L2Q8NHY3 880 aa17.62■□□□□ 0.41
CKAP2-202ENST00000378034 DCAF5Q96JK2 942 aa17.62■□□□□ 0.41
CKAP2-202ENST00000378034 KCNQ2O43526 872 aa17.61■□□□□ 0.41
CKAP2-202ENST00000378034 NEFMP07197 916 aa17.61■□□□□ 0.41
CKAP2-202ENST00000378034 MTHFSDQ2M296 383 aaKnown RBP17.61■□□□□ 0.41
CKAP2-202ENST00000378034 KAT6BQ8WYB5 2073 aa17.61■□□□□ 0.41
CKAP2-202ENST00000378034 RGPD3A6NKT7 1758 aaPredicted RBP17.61■□□□□ 0.41
CKAP2-202ENST00000378034 RGPD4Q7Z3J3 1758 aa17.61■□□□□ 0.41
CKAP2-202ENST00000378034 PRIM1P49642 420 aaKnown RBP17.6■□□□□ 0.41
CKAP2-202ENST00000378034 WDR43Q15061 677 aaKnown RBP eCLIP17.6■□□□□ 0.41
CKAP2-202ENST00000378034 PLSCR1O15162 318 aa17.6■□□□□ 0.41
CKAP2-202ENST00000378034 TOGARAM1Q9Y4F4 1720 aa17.6■□□□□ 0.41
CKAP2-202ENST00000378034 BTAF1O14981 1849 aa17.59■□□□□ 0.41
CKAP2-202ENST00000378034 PHACTR3Q96KR7 559 aa17.59■□□□□ 0.41
CKAP2-202ENST00000378034 ERVV-2B6SEH9 535 aa17.59■□□□□ 0.41
CKAP2-202ENST00000378034 PTF1AQ7RTS3 328 aa17.59■□□□□ 0.41
CKAP2-202ENST00000378034 SYTL4Q96C24 671 aaPredicted RBP17.59■□□□□ 0.41
CKAP2-202ENST00000378034 PLEKHF1Q96S99 279 aa17.59■□□□□ 0.41
CKAP2-202ENST00000378034 ITGB4P16144 1822 aa17.59■□□□□ 0.41
CKAP2-202ENST00000378034 DEFB132Q7Z7B7 95 aa17.58■□□□□ 0.4
CKAP2-202ENST00000378034 SCN11AQ9UI33 1791 aa17.57■□□□□ 0.4
CKAP2-202ENST00000378034 EN1Q05925 392 aaPredicted RBP17.57■□□□□ 0.4
CKAP2-202ENST00000378034 CAMKK2Q96RR4 588 aa17.57■□□□□ 0.4
CKAP2-202ENST00000378034 KDM6AO15550 1401 aaPredicted RBP17.57■□□□□ 0.4
CKAP2-202ENST00000378034 ADAMTS7Q9UKP4 1686 aa17.56■□□□□ 0.4
CKAP2-202ENST00000378034 GNAT3A8MTJ3 354 aa17.56■□□□□ 0.4
CKAP2-202ENST00000378034 MAP3K5Q99683 1374 aa17.56■□□□□ 0.4
CKAP2-202ENST00000378034 MAPK8IP3Q9UPT6 1336 aa17.56■□□□□ 0.4
CKAP2-202ENST00000378034 MPRIPQ6WCQ1 1025 aa17.55■□□□□ 0.4
CKAP2-202ENST00000378034 MRS2Q9HD23 443 aa17.55■□□□□ 0.4
CKAP2-202ENST00000378034 TMOD3Q9NYL9 352 aa17.55■□□□□ 0.4
CKAP2-202ENST00000378034 ADAMTS8Q9UP79 889 aa17.55■□□□□ 0.4
CKAP2-202ENST00000378034 CCDC184Q52MB2 194 aa17.55■□□□□ 0.4
CKAP2-202ENST00000378034 VIRMAQ69YN4 1812 aaKnown RBP17.54■□□□□ 0.4
CKAP2-202ENST00000378034 DIEXFQ68CQ4 756 aaKnown RBP17.54■□□□□ 0.4
CKAP2-202ENST00000378034 RNMTO43148 476 aaKnown RBP17.53■□□□□ 0.4
CKAP2-202ENST00000378034 HTATSF1O43719 755 aaKnown RBP17.53■□□□□ 0.4
CKAP2-202ENST00000378034 EZH2Q15910 746 aaKnown RBP17.53■□□□□ 0.4
CKAP2-202ENST00000378034 PIGBQ92521 554 aa17.53■□□□□ 0.4
CKAP2-202ENST00000378034 RREB1Q92766 1687 aa17.53■□□□□ 0.4
CKAP2-202ENST00000378034 CABP4P57796 275 aa17.53■□□□□ 0.4
CKAP2-202ENST00000378034 RUNDC1Q96C34 613 aa17.53■□□□□ 0.4
CKAP2-202ENST00000378034 NFE2L2Q16236 605 aa17.52■□□□□ 0.4
CKAP2-202ENST00000378034 PNISRQ8TF01 805 aaKnown RBP17.52■□□□□ 0.4
CKAP2-202ENST00000378034 SMARCC1Q92922 1105 aaPredicted RBP17.52■□□□□ 0.4
CKAP2-202ENST00000378034 MRC1P22897 1456 aa17.52■□□□□ 0.39
CKAP2-202ENST00000378034 LGR6Q9HBX8 967 aa17.51■□□□□ 0.39
CKAP2-202ENST00000378034 RTF1Q92541 710 aaKnown RBP17.51■□□□□ 0.39
CKAP2-202ENST00000378034 LY75O60449 1722 aa17.51■□□□□ 0.39
CKAP2-202ENST00000378034 SLC52A2Q9HAB3 445 aa17.5■□□□□ 0.39
CKAP2-202ENST00000378034 DLG5Q8TDM6 1919 aa17.5■□□□□ 0.39
CKAP2-202ENST00000378034 HMGB2P26583 209 aaKnown RBP17.49■□□□□ 0.39
CKAP2-202ENST00000378034 TXNRD1Q16881 649 aa17.49■□□□□ 0.39
CKAP2-202ENST00000378034 SLC27A3Q5K4L6 730 aa17.49■□□□□ 0.39
CKAP2-202ENST00000378034 NFATC2IPQ8NCF5 419 aa17.49■□□□□ 0.39
CKAP2-202ENST00000378034 CEMIPQ8WUJ3 1361 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 108.1 ms