RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 CABP1Q9NZU7 370 aa19.3■□□□□ 0.68
CKAP4-201ENST00000378026 SETBP1Q9Y6X0 1596 aa19.3■□□□□ 0.68
CKAP4-201ENST00000378026 PPP4R3BQ5MIZ7 849 aa19.29■□□□□ 0.68
CKAP4-201ENST00000378026 IFT172Q9UG01 1749 aa19.29■□□□□ 0.68
CKAP4-201ENST00000378026 SPDYE4A6NLX3 237 aa19.29■□□□□ 0.68
CKAP4-201ENST00000378026 ANKRD44Q8N8A2 993 aa19.29■□□□□ 0.68
CKAP4-201ENST00000378026 UPF3BQ9BZI7 483 aaKnown RBP19.29■□□□□ 0.68
CKAP4-201ENST00000378026 IFT57Q9NWB7 429 aa19.29■□□□□ 0.68
CKAP4-201ENST00000378026 VWDEQ8N2E2 1590 aa19.29■□□□□ 0.68
CKAP4-201ENST00000378026 BRD1O95696 1058 aa19.28■□□□□ 0.68
CKAP4-201ENST00000378026 ZSCAN20P17040 1043 aaPredicted RBP19.28■□□□□ 0.68
CKAP4-201ENST00000378026 CEP85Q6P2H3 762 aa19.28■□□□□ 0.68
CKAP4-201ENST00000378026 SYAP1Q96A49 352 aaPredicted RBP19.28■□□□□ 0.68
CKAP4-201ENST00000378026 ZC3H13Q5T200 1668 aaKnown RBP19.28■□□□□ 0.68
CKAP4-201ENST00000378026 PPRC1Q5VV67 1664 aaKnown RBP19.28■□□□□ 0.68
CKAP4-201ENST00000378026 HDGFL2Q7Z4V5 671 aaPredicted RBP19.28■□□□□ 0.68
CKAP4-201ENST00000378026 POLKQ9UBT6 870 aa19.28■□□□□ 0.68
CKAP4-201ENST00000378026 PALD1Q9ULE6 856 aa19.28■□□□□ 0.68
CKAP4-201ENST00000378026 ADCY5O95622 1261 aa19.28■□□□□ 0.68
CKAP4-201ENST00000378026 DMTNQ08495 405 aa19.28■□□□□ 0.68
CKAP4-201ENST00000378026 USP48Q86UV5 1035 aa19.28■□□□□ 0.68
CKAP4-201ENST00000378026 PRAM1Q96QH2 718 aa19.28■□□□□ 0.68
CKAP4-201ENST00000378026 MEIS3Q99687 375 aa19.28■□□□□ 0.68
CKAP4-201ENST00000378026 EMILIN1Q9Y6C2 1016 aa19.28■□□□□ 0.68
CKAP4-201ENST00000378026 LRRC7Q96NW7 1537 aa19.27■□□□□ 0.67
CKAP4-201ENST00000378026 IGSF3O75054 1194 aa19.26■□□□□ 0.67
CKAP4-201ENST00000378026 HCLS1P14317 486 aaPredicted RBP19.26■□□□□ 0.67
CKAP4-201ENST00000378026 ATP2B3Q16720 1220 aa19.26■□□□□ 0.67
CKAP4-201ENST00000378026 INO80Q9ULG1 1556 aaPredicted RBP19.26■□□□□ 0.67
CKAP4-201ENST00000378026 EFCAB6Q5THR3 1501 aa19.26■□□□□ 0.67
CKAP4-201ENST00000378026 VGFO15240 615 aaPredicted RBP19.26■□□□□ 0.67
CKAP4-201ENST00000378026 DTNBO60941 627 aa19.26■□□□□ 0.67
CKAP4-201ENST00000378026 PIBF1Q8WXW3 757 aa19.26■□□□□ 0.67
CKAP4-201ENST00000378026 ANO2Q9NQ90 1003 aa19.26■□□□□ 0.67
CKAP4-201ENST00000378026 PUS7Q96PZ0 661 aaKnown RBP19.26■□□□□ 0.67
CKAP4-201ENST00000378026 RILPL2Q969X0 211 aa19.25■□□□□ 0.67
CKAP4-201ENST00000378026 FANCAO15360 1455 aa19.25■□□□□ 0.67
CKAP4-201ENST00000378026 ADGRB3O60242 1522 aa19.25■□□□□ 0.67
CKAP4-201ENST00000378026 NEURL4Q96JN8 1562 aa19.24■□□□□ 0.67
CKAP4-201ENST00000378026 KIF3AQ9Y496 699 aa19.24■□□□□ 0.67
CKAP4-201ENST00000378026 SLC4A10Q6U841 1118 aa19.24■□□□□ 0.67
CKAP4-201ENST00000378026 MROH1Q8NDA8 1641 aa19.24■□□□□ 0.67
CKAP4-201ENST00000378026 RPAP2Q8IXW5 612 aaPredicted RBP19.23■□□□□ 0.67
CKAP4-201ENST00000378026 LARP6Q9BRS8 491 aaKnown RBP19.23■□□□□ 0.67
CKAP4-201ENST00000378026 ZCCHC11Q5TAX3 1644 aaKnown RBP19.23■□□□□ 0.67
CKAP4-201ENST00000378026 FAM135BQ49AJ0 1406 aa19.23■□□□□ 0.67
CKAP4-201ENST00000378026 TRIM6-TRIM34B2RNG4 842 aa19.23■□□□□ 0.67
CKAP4-201ENST00000378026 ZNF853P0CG23 659 aa19.23■□□□□ 0.67
CKAP4-201ENST00000378026 PRIMPOLQ96LW4 560 aa19.23■□□□□ 0.67
CKAP4-201ENST00000378026 GLI2P10070 1586 aa19.23■□□□□ 0.67
CKAP4-201ENST00000378026 EXOC6BQ9Y2D4 811 aa19.23■□□□□ 0.67
CKAP4-201ENST00000378026 NPATQ14207 1427 aa19.22■□□□□ 0.67
CKAP4-201ENST00000378026 PHF14O94880 888 aa19.22■□□□□ 0.67
CKAP4-201ENST00000378026 HMGN5P82970 282 aaKnown RBP19.22■□□□□ 0.67
CKAP4-201ENST00000378026 BCL2L12Q9HB09 334 aa19.22■□□□□ 0.67
CKAP4-201ENST00000378026 KNDC1Q76NI1 1749 aa19.22■□□□□ 0.67
CKAP4-201ENST00000378026 PNPLA6Q8IY17 1366 aa19.22■□□□□ 0.67
CKAP4-201ENST00000378026 PDE1AP54750 535 aa19.21■□□□□ 0.67
CKAP4-201ENST00000378026 SPC24Q8NBT2 197 aa19.21■□□□□ 0.67
CKAP4-201ENST00000378026 CDK19Q9BWU1 502 aa19.21■□□□□ 0.67
CKAP4-201ENST00000378026 MSH6P52701 1360 aa19.21■□□□□ 0.67
CKAP4-201ENST00000378026 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.21■□□□□ 0.67
CKAP4-201ENST00000378026 CNPY2Q9Y2B0 182 aa19.21■□□□□ 0.67
CKAP4-201ENST00000378026 ZRANB1Q9UGI0 708 aa19.2■□□□□ 0.66
CKAP4-201ENST00000378026 RPGRIP1LQ68CZ1 1315 aa19.2■□□□□ 0.66
CKAP4-201ENST00000378026 ATP10DQ9P241 1426 aa19.19■□□□□ 0.66
CKAP4-201ENST00000378026 BCL11BQ9C0K0 894 aaPredicted RBP19.19■□□□□ 0.66
CKAP4-201ENST00000378026 MCCP23508 829 aa19.19■□□□□ 0.66
CKAP4-201ENST00000378026 RRS1Q15050 365 aaKnown RBP19.19■□□□□ 0.66
CKAP4-201ENST00000378026 UTP14CQ5TAP6 766 aaKnown RBP19.19■□□□□ 0.66
CKAP4-201ENST00000378026 ESYT1Q9BSJ8 1104 aa19.19■□□□□ 0.66
CKAP4-201ENST00000378026 RTL1A6NKG5 1358 aa19.18■□□□□ 0.66
CKAP4-201ENST00000378026 F6X3S4 739 aa19.18■□□□□ 0.66
CKAP4-201ENST00000378026 CUL4AQ13619 759 aa19.18■□□□□ 0.66
CKAP4-201ENST00000378026 PDCL2Q8N4E4 241 aa19.18■□□□□ 0.66
CKAP4-201ENST00000378026 U2AF2P26368 475 aaKnown RBP eCLIP19.18■□□□□ 0.66
CKAP4-201ENST00000378026 GIMAP6Q6P9H5 292 aa19.18■□□□□ 0.66
CKAP4-201ENST00000378026 FIBPO43427 364 aa19.17■□□□□ 0.66
CKAP4-201ENST00000378026 MCM2P49736 904 aa19.17■□□□□ 0.66
CKAP4-201ENST00000378026 SRCIN1Q9C0H9 1055 aa19.17■□□□□ 0.66
CKAP4-201ENST00000378026 PPLO60437 1756 aa19.17■□□□□ 0.66
CKAP4-201ENST00000378026 REREQ9P2R6 1566 aa19.17■□□□□ 0.66
CKAP4-201ENST00000378026 FAM184AQ8NB25 1140 aa19.16■□□□□ 0.66
CKAP4-201ENST00000378026 CAMSAP1Q5T5Y3 1602 aa19.16■□□□□ 0.66
CKAP4-201ENST00000378026 RIOK3O14730 519 aaKnown RBP19.16■□□□□ 0.66
CKAP4-201ENST00000378026 FKBP5Q13451 457 aaPredicted RBP19.16■□□□□ 0.66
CKAP4-201ENST00000378026 CCDC183Q5T5S1 534 aa19.16■□□□□ 0.66
CKAP4-201ENST00000378026 MIS18AQ9NYP9 233 aa19.16■□□□□ 0.66
CKAP4-201ENST00000378026 PYCARDQ9ULZ3 195 aa19.16■□□□□ 0.66
CKAP4-201ENST00000378026 MCM10Q7L590 875 aa19.16■□□□□ 0.66
CKAP4-201ENST00000378026 SLC4A2P04920 1241 aa19.15■□□□□ 0.66
CKAP4-201ENST00000378026 IL13P35225 146 aa19.15■□□□□ 0.66
CKAP4-201ENST00000378026 WDR33Q9C0J8 1336 aaKnown RBP19.15■□□□□ 0.66
CKAP4-201ENST00000378026 CD163L1Q9NR16 1453 aa19.15■□□□□ 0.66
CKAP4-201ENST00000378026 ARHGEF28Q8N1W1 1705 aaKnown RBP19.15■□□□□ 0.66
CKAP4-201ENST00000378026 UVSSAQ2YD98 709 aa19.15■□□□□ 0.66
CKAP4-201ENST00000378026 HMMRO75330 724 aa19.14■□□□□ 0.66
CKAP4-201ENST00000378026 KDM4AO75164 1064 aa19.14■□□□□ 0.65
CKAP4-201ENST00000378026 GTF2F1P35269 517 aaKnown RBP eCLIP19.14■□□□□ 0.65
CKAP4-201ENST00000378026 LMOD3Q0VAK6 560 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms