RNA–Protein interactions for RNA: ENST00000376061.8

PDPN-203, Transcript of podoplanin, humanhuman

TSL 1 (best) BASIC

Gene PDPN, Length 1,368 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-203ENST00000376061 PKD1L3Q7Z443 1732 aa13.75□□□□□ -0.21
PDPN-203ENST00000376061 WNK3Q9BYP7 1800 aa13.75□□□□□ -0.21
PDPN-203ENST00000376061 CDCA7LQ96GN5 454 aa13.74□□□□□ -0.21
PDPN-203ENST00000376061 TRIM35Q9UPQ4 493 aa13.74□□□□□ -0.21
PDPN-203ENST00000376061 VIRMAQ69YN4 1812 aaKnown RBP13.74□□□□□ -0.21
PDPN-203ENST00000376061 FAM83GA6ND36 823 aa13.73□□□□□ -0.21
PDPN-203ENST00000376061 RIPK4P57078 832 aa13.73□□□□□ -0.21
PDPN-203ENST00000376061 WDR17Q8IZU2 1322 aa13.73□□□□□ -0.21
PDPN-203ENST00000376061 MEGF6O75095 1541 aa13.73□□□□□ -0.21
PDPN-203ENST00000376061 CSB-PGBD3P0DP91 1061 aa13.72□□□□□ -0.21
PDPN-203ENST00000376061 GOLGA2Q08379 1002 aa13.72□□□□□ -0.21
PDPN-203ENST00000376061 LRP6O75581 1613 aa13.71□□□□□ -0.21
PDPN-203ENST00000376061 NLRP2Q9NX02 1062 aa13.71□□□□□ -0.21
PDPN-203ENST00000376061 HSPA1LP34931 641 aa13.71□□□□□ -0.22
PDPN-203ENST00000376061 MTHFSDQ2M296 383 aaKnown RBP13.71□□□□□ -0.22
PDPN-203ENST00000376061 WDR63Q8IWG1 891 aa13.71□□□□□ -0.22
PDPN-203ENST00000376061 SHANK3Q9BYB0 1731 aa13.7□□□□□ -0.22
PDPN-203ENST00000376061 PLEKHG2Q9H7P9 1386 aa13.7□□□□□ -0.22
PDPN-203ENST00000376061 NUTM2BA6NNL0 878 aaPredicted RBP13.7□□□□□ -0.22
PDPN-203ENST00000376061 NUTM2EB1AL46 878 aaPredicted RBP13.7□□□□□ -0.22
PDPN-203ENST00000376061 ADAMTS2O95450 1211 aa13.7□□□□□ -0.22
PDPN-203ENST00000376061 SLFN5Q08AF3 891 aa13.7□□□□□ -0.22
PDPN-203ENST00000376061 LMOD3Q0VAK6 560 aa13.7□□□□□ -0.22
PDPN-203ENST00000376061 NUTM2AQ8IVF1 878 aaPredicted RBP13.7□□□□□ -0.22
PDPN-203ENST00000376061 GAS2L2Q8NHY3 880 aa13.7□□□□□ -0.22
PDPN-203ENST00000376061 ADAMTS7Q9UKP4 1686 aa13.69□□□□□ -0.22
PDPN-203ENST00000376061 CRB1P82279 1406 aa13.69□□□□□ -0.22
PDPN-203ENST00000376061 MAP3K5Q99683 1374 aa13.69□□□□□ -0.22
PDPN-203ENST00000376061 E9PSI1 815 aa13.69□□□□□ -0.22
PDPN-203ENST00000376061 DUSP27Q5VZP5 1158 aa13.69□□□□□ -0.22
PDPN-203ENST00000376061 TRMT2AQ8IZ69 625 aaKnown RBP13.69□□□□□ -0.22
PDPN-203ENST00000376061 BTG4Q9NY30 223 aa13.69□□□□□ -0.22
PDPN-203ENST00000376061 SLIT2O94813 1529 aa13.68□□□□□ -0.22
PDPN-203ENST00000376061 OVOS2A0A0G2JMS6 1433 aa13.68□□□□□ -0.22
PDPN-203ENST00000376061 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.68□□□□□ -0.22
PDPN-203ENST00000376061 IL16Q14005 1332 aa13.68□□□□□ -0.22
PDPN-203ENST00000376061 SPATA31A6Q5VVP1 1343 aa13.68□□□□□ -0.22
PDPN-203ENST00000376061 LARP1Q6PKG0 1096 aaKnown RBP13.68□□□□□ -0.22
PDPN-203ENST00000376061 TOM1L2Q6ZVM7 507 aa13.68□□□□□ -0.22
PDPN-203ENST00000376061 AKT1S1Q96B36 256 aa13.68□□□□□ -0.22
PDPN-203ENST00000376061 STRN4Q9NRL3 753 aa13.68□□□□□ -0.22
PDPN-203ENST00000376061 THUMPD2Q9BTF0 503 aaKnown RBP13.67□□□□□ -0.22
PDPN-203ENST00000376061 CARD10Q9BWT7 1032 aa13.67□□□□□ -0.22
PDPN-203ENST00000376061 SCN11AQ9UI33 1791 aa13.66□□□□□ -0.22
PDPN-203ENST00000376061 EVA1CP58658 441 aa13.66□□□□□ -0.22
PDPN-203ENST00000376061 RAPGEF4Q8WZA2 1011 aa13.66□□□□□ -0.22
PDPN-203ENST00000376061 SIPA1L3O60292 1781 aaPredicted RBP13.65□□□□□ -0.22
PDPN-203ENST00000376061 DCTN1Q14203 1278 aa13.65□□□□□ -0.22
PDPN-203ENST00000376061 AMOTQ4VCS5 1084 aa13.65□□□□□ -0.22
PDPN-203ENST00000376061 FANCIQ9NVI1 1328 aa13.64□□□□□ -0.23
PDPN-203ENST00000376061 TATP17735 454 aaPredicted RBP13.64□□□□□ -0.23
PDPN-203ENST00000376061 CALD1Q05682 793 aaKnown RBP13.64□□□□□ -0.23
PDPN-203ENST00000376061 PLEKHO1Q53GL0 409 aaPredicted RBP13.64□□□□□ -0.23
PDPN-203ENST00000376061 ZNF530Q6P9A1 599 aaPredicted RBP13.64□□□□□ -0.23
PDPN-203ENST00000376061 DISP2A7MBM2 1401 aa13.64□□□□□ -0.23
PDPN-203ENST00000376061 GNAT3A8MTJ3 354 aa13.63□□□□□ -0.23
PDPN-203ENST00000376061 HTATSF1O43719 755 aaKnown RBP13.63□□□□□ -0.23
PDPN-203ENST00000376061 MCM10Q7L590 875 aa13.63□□□□□ -0.23
PDPN-203ENST00000376061 MYH16Q9H6N6 1097 aa13.63□□□□□ -0.23
PDPN-203ENST00000376061 KDM3BQ7LBC6 1761 aa13.63□□□□□ -0.23
PDPN-203ENST00000376061 RTF1Q92541 710 aaKnown RBP13.62□□□□□ -0.23
PDPN-203ENST00000376061 TSR2Q969E8 191 aaKnown RBP13.62□□□□□ -0.23
PDPN-203ENST00000376061 IFT57Q9NWB7 429 aa13.62□□□□□ -0.23
PDPN-203ENST00000376061 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.62□□□□□ -0.23
PDPN-203ENST00000376061 CEMIPQ8WUJ3 1361 aa13.62□□□□□ -0.23
PDPN-203ENST00000376061 ZNF853P0CG23 659 aa13.61□□□□□ -0.23
PDPN-203ENST00000376061 AKAP4Q5JQC9 854 aa13.61□□□□□ -0.23
PDPN-203ENST00000376061 BCL9LQ86UU0 1499 aa13.61□□□□□ -0.23
PDPN-203ENST00000376061 KDM6AO15550 1401 aaPredicted RBP13.61□□□□□ -0.23
PDPN-203ENST00000376061 IL2RBP14784 551 aa13.6□□□□□ -0.23
PDPN-203ENST00000376061 GNAI1P63096 354 aa13.6□□□□□ -0.23
PDPN-203ENST00000376061 C1orf141Q5JVX7 400 aa13.6□□□□□ -0.23
PDPN-203ENST00000376061 C8orf37Q96NL8 207 aa13.6□□□□□ -0.23
PDPN-203ENST00000376061 RCAN3Q9UKA8 241 aa13.6□□□□□ -0.23
PDPN-203ENST00000376061 SPG7Q9UQ90 795 aa13.6□□□□□ -0.23
PDPN-203ENST00000376061 MRC1P22897 1456 aa13.6□□□□□ -0.23
PDPN-203ENST00000376061 TOGARAM1Q9Y4F4 1720 aa13.6□□□□□ -0.23
PDPN-203ENST00000376061 PIP4P2Q8N4L2 257 aa13.59□□□□□ -0.23
PDPN-203ENST00000376061 IL17REQ8NFR9 667 aa13.59□□□□□ -0.23
PDPN-203ENST00000376061 CFAP44Q96MT7 982 aa13.59□□□□□ -0.23
PDPN-203ENST00000376061 LAS1LQ9Y4W2 734 aaKnown RBP13.59□□□□□ -0.23
PDPN-203ENST00000376061 SUPT16HQ9Y5B9 1047 aaKnown RBP13.59□□□□□ -0.23
PDPN-203ENST00000376061 SPATA31A1Q5TZJ5 1347 aa13.59□□□□□ -0.23
PDPN-203ENST00000376061 PHKG2P15735 406 aa13.58□□□□□ -0.23
PDPN-203ENST00000376061 NGLY1Q96IV0 654 aa13.58□□□□□ -0.23
PDPN-203ENST00000376061 MBIPQ9NS73 344 aa13.58□□□□□ -0.23
PDPN-203ENST00000376061 USP35Q9P2H5 1018 aa13.58□□□□□ -0.23
PDPN-203ENST00000376061 TNS2Q63HR2 1409 aa13.58□□□□□ -0.24
PDPN-203ENST00000376061 SPATA31A5Q5VU36 1347 aa13.58□□□□□ -0.24
PDPN-203ENST00000376061 SPATA31A7Q8IWB4 1347 aa13.58□□□□□ -0.24
PDPN-203ENST00000376061 PCDH11XQ9BZA7 1347 aa13.58□□□□□ -0.24
PDPN-203ENST00000376061 PCDH11YQ9BZA8 1340 aa13.58□□□□□ -0.24
PDPN-203ENST00000376061 CYP27B1O15528 508 aa13.58□□□□□ -0.24
PDPN-203ENST00000376061 UNC5CLQ8IV45 518 aa13.58□□□□□ -0.24
PDPN-203ENST00000376061 FNBP4Q8N3X1 1017 aaPredicted RBP13.58□□□□□ -0.24
PDPN-203ENST00000376061 DAXXQ9UER7 740 aaPredicted RBP13.58□□□□□ -0.24
PDPN-203ENST00000376061 RNF123Q5XPI4 1314 aa13.57□□□□□ -0.24
PDPN-203ENST00000376061 CHL1O00533 1208 aa13.57□□□□□ -0.24
PDPN-203ENST00000376061 EXOSC9Q06265 439 aaKnown RBP13.57□□□□□ -0.24
PDPN-203ENST00000376061 MPRIPQ6WCQ1 1025 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms