RNA–Protein interactions for RNA: ENST00000375661.5

LSM2-208, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM2, Length 876 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM2-208ENST00000375661 SLC24A1O60721 1099 aa17.05■□□□□ 0.32
LSM2-208ENST00000375661 C1QTNF8P60827 252 aa17.05■□□□□ 0.32
LSM2-208ENST00000375661 TFCP2L1Q9NZI6 479 aa17.04■□□□□ 0.32
LSM2-208ENST00000375661 UTRNP46939 3433 aa17.03■□□□□ 0.32
LSM2-208ENST00000375661 HMGB2P26583 209 aaKnown RBP17.03■□□□□ 0.32
LSM2-208ENST00000375661 COG3Q96JB2 828 aa17.03■□□□□ 0.32
LSM2-208ENST00000375661 RTL1A6NKG5 1358 aa17.02■□□□□ 0.32
LSM2-208ENST00000375661 NSD2O96028 1365 aa17.02■□□□□ 0.32
LSM2-208ENST00000375661 MAP3K19Q56UN5 1328 aa17.02■□□□□ 0.32
LSM2-208ENST00000375661 HOXC9P31274 260 aa17.02■□□□□ 0.32
LSM2-208ENST00000375661 PRIM1P49642 420 aaKnown RBP17.02■□□□□ 0.32
LSM2-208ENST00000375661 ZCRB1Q8TBF4 217 aaKnown RBP17.02■□□□□ 0.32
LSM2-208ENST00000375661 LTV1Q96GA3 475 aaPredicted RBP17.02■□□□□ 0.32
LSM2-208ENST00000375661 CGNL1Q0VF96 1302 aa17.01■□□□□ 0.31
LSM2-208ENST00000375661 SENP3-EIF4A1A0A087X0R7 540 aa17.01■□□□□ 0.31
LSM2-208ENST00000375661 AMPHP49418 695 aa17.01■□□□□ 0.31
LSM2-208ENST00000375661 SYTL4Q96C24 671 aaPredicted RBP17.01■□□□□ 0.31
LSM2-208ENST00000375661 C5P01031 1676 aa17.01■□□□□ 0.31
LSM2-208ENST00000375661 KLHL34Q8N239 644 aa17■□□□□ 0.31
LSM2-208ENST00000375661 MEGF6O75095 1541 aa17■□□□□ 0.31
LSM2-208ENST00000375661 TAF1LQ8IZX4 1826 aa16.99■□□□□ 0.31
LSM2-208ENST00000375661 GIGYF1O75420 1035 aaPredicted RBP16.98■□□□□ 0.31
LSM2-208ENST00000375661 TESK2Q96S53 571 aa16.98■□□□□ 0.31
LSM2-208ENST00000375661 CCNL1Q9UK58 526 aaPredicted RBP16.98■□□□□ 0.31
LSM2-208ENST00000375661 USP47Q96K76 1375 aa16.98■□□□□ 0.31
LSM2-208ENST00000375661 GRIN3BO60391 1043 aa16.97■□□□□ 0.31
LSM2-208ENST00000375661 SMG6Q86US8 1419 aaKnown RBP16.96■□□□□ 0.31
LSM2-208ENST00000375661 KIF20BQ96Q89 1820 aa16.96■□□□□ 0.31
LSM2-208ENST00000375661 KCNQ4P56696 695 aa16.96■□□□□ 0.31
LSM2-208ENST00000375661 PELP1Q8IZL8 1130 aaKnown RBP16.96■□□□□ 0.31
LSM2-208ENST00000375661 NLGN2Q8NFZ4 835 aa16.95■□□□□ 0.3
LSM2-208ENST00000375661 ITGB4P16144 1822 aa16.94■□□□□ 0.3
LSM2-208ENST00000375661 ST20-MTHFSA0A0A6YYL1 179 aa16.94■□□□□ 0.3
LSM2-208ENST00000375661 NBPF6Q5VWK0 638 aa16.94■□□□□ 0.3
LSM2-208ENST00000375661 COL23A1Q86Y22 540 aaPredicted RBP16.94■□□□□ 0.3
LSM2-208ENST00000375661 RAPGEF4Q8WZA2 1011 aa16.94■□□□□ 0.3
LSM2-208ENST00000375661 NBPF4Q96M43 638 aa16.94■□□□□ 0.3
LSM2-208ENST00000375661 KIF24Q5T7B8 1368 aa16.93■□□□□ 0.3
LSM2-208ENST00000375661 FLAD1Q8NFF5 587 aa16.93■□□□□ 0.3
LSM2-208ENST00000375661 INSRP06213 1382 aa16.92■□□□□ 0.3
LSM2-208ENST00000375661 MSH5O43196 834 aa16.92■□□□□ 0.3
LSM2-208ENST00000375661 TATP17735 454 aaPredicted RBP16.92■□□□□ 0.3
LSM2-208ENST00000375661 FBLN1P23142 703 aa16.92■□□□□ 0.3
LSM2-208ENST00000375661 PKD1L3Q7Z443 1732 aa16.92■□□□□ 0.3
LSM2-208ENST00000375661 PCDH11XQ9BZA7 1347 aa16.92■□□□□ 0.3
LSM2-208ENST00000375661 PCDH11YQ9BZA8 1340 aa16.92■□□□□ 0.3
LSM2-208ENST00000375661 FYB1O15117 783 aa16.91■□□□□ 0.3
LSM2-208ENST00000375661 YBX3P16989 372 aaKnown RBP eCLIP16.91■□□□□ 0.32e-9■■□□□ 14.2
LSM2-208ENST00000375661 C4BP0C0L5 1744 aa16.9■□□□□ 0.3
LSM2-208ENST00000375661 RRS1Q15050 365 aaKnown RBP16.9■□□□□ 0.3
LSM2-208ENST00000375661 CD2APQ9Y5K6 639 aa16.9■□□□□ 0.3
LSM2-208ENST00000375661 UBR3Q6ZT12 1888 aa16.9■□□□□ 0.3
LSM2-208ENST00000375661 TOGARAM1Q9Y4F4 1720 aa16.9■□□□□ 0.3
LSM2-208ENST00000375661 FLT4P35916 1363 aa16.89■□□□□ 0.29
LSM2-208ENST00000375661 PALLDQ8WX93 1383 aa16.89■□□□□ 0.29
LSM2-208ENST00000375661 NSD3Q9BZ95 1437 aa16.88■□□□□ 0.29
LSM2-208ENST00000375661 SMARCC1Q92922 1105 aaPredicted RBP16.88■□□□□ 0.29
LSM2-208ENST00000375661 GGNBP2Q9H3C7 697 aa16.88■□□□□ 0.29
LSM2-208ENST00000375661 TMF1P82094 1093 aa16.87■□□□□ 0.29
LSM2-208ENST00000375661 USHBP1Q8N6Y0 703 aa16.87■□□□□ 0.29
LSM2-208ENST00000375661 ANKRD26Q9UPS8 1709 aa16.87■□□□□ 0.29
LSM2-208ENST00000375661 CDCA8Q53HL2 280 aa16.86■□□□□ 0.29
LSM2-208ENST00000375661 MSL1Q68DK7 614 aa16.86■□□□□ 0.29
LSM2-208ENST00000375661 MAP2P11137 1827 aaKnown RBP16.86■□□□□ 0.29
LSM2-208ENST00000375661 HSP90AB2PQ58FF8 381 aa16.85■□□□□ 0.29
LSM2-208ENST00000375661 NCAPD2Q15021 1401 aa16.85■□□□□ 0.29
LSM2-208ENST00000375661 ATP10DQ9P241 1426 aa16.85■□□□□ 0.29
LSM2-208ENST00000375661 GOLGB1Q14789 3259 aaKnown RBP16.84■□□□□ 0.29
LSM2-208ENST00000375661 ZEB1P37275 1124 aaPredicted RBP16.84■□□□□ 0.29
LSM2-208ENST00000375661 MPRIPQ6WCQ1 1025 aa16.84■□□□□ 0.29
LSM2-208ENST00000375661 CYP27B1O15528 508 aa16.83■□□□□ 0.28
LSM2-208ENST00000375661 ADCY9O60503 1353 aa16.83■□□□□ 0.28
LSM2-208ENST00000375661 HSPA5P11021 654 aaKnown RBP16.83■□□□□ 0.28
LSM2-208ENST00000375661 EIF4G2P78344 907 aaKnown RBP eCLIP16.83■□□□□ 0.28
LSM2-208ENST00000375661 AK7Q96M32 723 aa16.83■□□□□ 0.28
LSM2-208ENST00000375661 NKX1-1Q15270 411 aaPredicted RBP16.82■□□□□ 0.28
LSM2-208ENST00000375661 SSFA2P28290 1259 aa16.8■□□□□ 0.28
LSM2-208ENST00000375661 GPBP1L1Q9HC44 474 aaPredicted RBP16.8■□□□□ 0.28
LSM2-208ENST00000375661 SPG7Q9UQ90 795 aa16.8■□□□□ 0.28
LSM2-208ENST00000375661 KIF13BQ9NQT8 1826 aa16.8■□□□□ 0.28
LSM2-208ENST00000375661 IFFO2Q5TF58 517 aa16.79■□□□□ 0.28
LSM2-208ENST00000375661 PIGBQ92521 554 aa16.79■□□□□ 0.28
LSM2-208ENST00000375661 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.79■□□□□ 0.28
LSM2-208ENST00000375661 ZNF831Q5JPB2 1677 aa16.78■□□□□ 0.28
LSM2-208ENST00000375661 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.78■□□□□ 0.28
LSM2-208ENST00000375661 CICQ96RK0 1608 aaPredicted RBP16.78■□□□□ 0.28
LSM2-208ENST00000375661 PLEKHG2Q9H7P9 1386 aa16.77■□□□□ 0.28
LSM2-208ENST00000375661 IGSF1Q8N6C5 1336 aa16.77■□□□□ 0.28
LSM2-208ENST00000375661 LOC102724428A0A0B4J2F2 783 aa16.77■□□□□ 0.28
LSM2-208ENST00000375661 SIK1P57059 783 aa16.77■□□□□ 0.28
LSM2-208ENST00000375661 WASHC2AQ641Q2 1341 aa16.76■□□□□ 0.27
LSM2-208ENST00000375661 PHF14O94880 888 aa16.76■□□□□ 0.27
LSM2-208ENST00000375661 AMIGO3Q86WK7 504 aa16.76■□□□□ 0.27
LSM2-208ENST00000375661 CARD14Q9BXL6 1004 aa16.76■□□□□ 0.27
LSM2-208ENST00000375661 EMILIN1Q9Y6C2 1016 aa16.76■□□□□ 0.27
LSM2-208ENST00000375661 TMOD3Q9NYL9 352 aa16.75■□□□□ 0.27
LSM2-208ENST00000375661 HSPA6P17066 643 aa16.74■□□□□ 0.27
LSM2-208ENST00000375661 LINC00116Q8NCU8 138 aa16.74■□□□□ 0.27
LSM2-208ENST00000375661 KIAA1551Q9HCM1 1747 aa16.73■□□□□ 0.27
LSM2-208ENST00000375661 IFNL2Q8IZJ0 200 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms