RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 NPATQ14207 1427 aa11.28□□□□□ -0.6
UBR4-201ENST00000375218 NGEFQ8N5V2 710 aa11.28□□□□□ -0.6
UBR4-201ENST00000375218 COMMD10Q9Y6G5 202 aa11.28□□□□□ -0.6
UBR4-201ENST00000375218 CLTCQ00610 1675 aaKnown RBP11.28□□□□□ -0.6
UBR4-201ENST00000375218 MSL3Q8N5Y2 521 aaKnown RBP11.28□□□□□ -0.6
UBR4-201ENST00000375218 PUF60Q9UHX1 559 aaKnown RBP11.28□□□□□ -0.6
UBR4-201ENST00000375218 ZNF16P17020 682 aaPredicted RBP11.27□□□□□ -0.6
UBR4-201ENST00000375218 C9orf131Q5VYM1 1079 aa11.27□□□□□ -0.6
UBR4-201ENST00000375218 RAPGEF3O95398 923 aa11.27□□□□□ -0.61
UBR4-201ENST00000375218 PDILTQ8N807 584 aa11.27□□□□□ -0.61
UBR4-201ENST00000375218 PRAG1Q86YV5 1406 aa11.27□□□□□ -0.61
UBR4-201ENST00000375218 BIRC2Q13490 618 aa11.27□□□□□ -0.61
UBR4-201ENST00000375218 MAP3K20Q9NYL2 800 aaKnown RBP11.27□□□□□ -0.61
UBR4-201ENST00000375218 MYO3AQ8NEV4 1616 aa11.27□□□□□ -0.61
UBR4-201ENST00000375218 ANKRD30AQ9BXX3 1397 aa11.26□□□□□ -0.61
UBR4-201ENST00000375218 GYS2P54840 703 aa11.26□□□□□ -0.61
UBR4-201ENST00000375218 TXNDC2Q86VQ3 553 aa11.26□□□□□ -0.61
UBR4-201ENST00000375218 CCDC85AQ96PX6 553 aaPredicted RBP11.26□□□□□ -0.61
UBR4-201ENST00000375218 NEXMIFQ5QGS0 1516 aa11.26□□□□□ -0.61
UBR4-201ENST00000375218 DNTTIP2Q5QJE6 756 aaKnown RBP11.26□□□□□ -0.61
UBR4-201ENST00000375218 HSCBQ8IWL3 235 aa11.25□□□□□ -0.61
UBR4-201ENST00000375218 KIF1BO60333 1816 aa11.25□□□□□ -0.61
UBR4-201ENST00000375218 AMOTL1Q8IY63 956 aa11.25□□□□□ -0.61
UBR4-201ENST00000375218 FNBP4Q8N3X1 1017 aaPredicted RBP11.25□□□□□ -0.61
UBR4-201ENST00000375218 RALGAPBQ86X10 1494 aa11.25□□□□□ -0.61
UBR4-201ENST00000375218 KIAA1210Q9ULL0 1709 aa11.25□□□□□ -0.61
UBR4-201ENST00000375218 LRRC27Q9C0I9 530 aa11.25□□□□□ -0.61
UBR4-201ENST00000375218 NEO1Q92859 1461 aa11.25□□□□□ -0.61
UBR4-201ENST00000375218 ARHGEF28Q8N1W1 1705 aaKnown RBP11.25□□□□□ -0.61
UBR4-201ENST00000375218 TNNT2P45379 298 aaPredicted RBP11.25□□□□□ -0.61
UBR4-201ENST00000375218 USP5P45974 858 aa11.25□□□□□ -0.61
UBR4-201ENST00000375218 KLF15Q9UIH9 416 aa11.25□□□□□ -0.61
UBR4-201ENST00000375218 ZNF330Q9Y3S2 320 aaPredicted RBP11.25□□□□□ -0.61
UBR4-201ENST00000375218 DHX29Q7Z478 1369 aaKnown RBP11.24□□□□□ -0.61
UBR4-201ENST00000375218 ZRANB2O95218 330 aaKnown RBP eCLIP11.24□□□□□ -0.61
UBR4-201ENST00000375218 CYB5RLQ6IPT4 315 aa11.24□□□□□ -0.61
UBR4-201ENST00000375218 NUB1Q9Y5A7 615 aa11.24□□□□□ -0.61
UBR4-201ENST00000375218 HOXA2O43364 376 aa11.24□□□□□ -0.61
UBR4-201ENST00000375218 PSME1Q06323 249 aa11.24□□□□□ -0.61
UBR4-201ENST00000375218 RPS6KC1Q96S38 1066 aa11.24□□□□□ -0.61
UBR4-201ENST00000375218 NRBP1Q9UHY1 535 aa11.24□□□□□ -0.61
UBR4-201ENST00000375218 ZC3H6P61129 1189 aaKnown RBP11.24□□□□□ -0.61
UBR4-201ENST00000375218 PTPROQ16827 1216 aa11.24□□□□□ -0.61
UBR4-201ENST00000375218 NBPF6Q5VWK0 638 aa11.23□□□□□ -0.61
UBR4-201ENST00000375218 NBPF5PQ86XG9 351 aaPredicted RBP11.23□□□□□ -0.61
UBR4-201ENST00000375218 C1orf131Q8NDD1 294 aaKnown RBP11.23□□□□□ -0.61
UBR4-201ENST00000375218 NBPF4Q96M43 638 aa11.23□□□□□ -0.61
UBR4-201ENST00000375218 BCL2L13Q9BXK5 485 aa11.23□□□□□ -0.61
UBR4-201ENST00000375218 MRVI1Q9Y6F6 885 aa11.23□□□□□ -0.61
UBR4-201ENST00000375218 LMNB1P20700 586 aa11.23□□□□□ -0.61
UBR4-201ENST00000375218 PUS10Q3MIT2 529 aaKnown RBP11.23□□□□□ -0.61
UBR4-201ENST00000375218 NUP155O75694 1391 aa11.23□□□□□ -0.61
UBR4-201ENST00000375218 DYTNA2CJ06 578 aa11.23□□□□□ -0.61
UBR4-201ENST00000375218 ZRSR2Q15696 482 aaKnown RBP11.23□□□□□ -0.61
UBR4-201ENST00000375218 ENOX2Q16206 610 aaKnown RBP11.23□□□□□ -0.61
UBR4-201ENST00000375218 TMA7Q9Y2S6 64 aaKnown RBP11.22□□□□□ -0.61
UBR4-201ENST00000375218 ARHGEF40Q8TER5 1519 aa11.22□□□□□ -0.61
UBR4-201ENST00000375218 HSP90AB2PQ58FF8 381 aa11.22□□□□□ -0.61
UBR4-201ENST00000375218 NOS1P29475 1434 aa11.22□□□□□ -0.61
UBR4-201ENST00000375218 EXOC5O00471 708 aa11.22□□□□□ -0.61
UBR4-201ENST00000375218 LARGE2Q8N3Y3 721 aa11.22□□□□□ -0.61
UBR4-201ENST00000375218 HSP90AA1P07900 732 aaKnown RBP11.21□□□□□ -0.61
UBR4-201ENST00000375218 NEXNQ0ZGT2 675 aa11.21□□□□□ -0.61
UBR4-201ENST00000375218 RPAINQ86UA6 219 aa11.21□□□□□ -0.61
UBR4-201ENST00000375218 UTRNP46939 3433 aa11.21□□□□□ -0.61
UBR4-201ENST00000375218 PTPRMP28827 1452 aa11.21□□□□□ -0.62
UBR4-201ENST00000375218 MAP2K1Q02750 393 aaPredicted RBP11.21□□□□□ -0.62
UBR4-201ENST00000375218 MYCBPQ99417 103 aaPredicted RBP11.21□□□□□ -0.62
UBR4-201ENST00000375218 STK26Q9P289 416 aa11.21□□□□□ -0.62
UBR4-201ENST00000375218 SKAP1Q86WV1 359 aa11.2□□□□□ -0.62
UBR4-201ENST00000375218 MPHOSPH6Q99547 160 aaKnown RBP11.2□□□□□ -0.62
UBR4-201ENST00000375218 LNPKQ9C0E8 428 aa11.2□□□□□ -0.62
UBR4-201ENST00000375218 ERICH4A6NGS2 130 aa11.2□□□□□ -0.62
UBR4-201ENST00000375218 DIEXFQ68CQ4 756 aaKnown RBP11.2□□□□□ -0.62
UBR4-201ENST00000375218 IQSEC3Q9UPP2 1182 aaPredicted RBP11.2□□□□□ -0.62
UBR4-201ENST00000375218 PDZRN3Q9UPQ7 1066 aa11.2□□□□□ -0.62
UBR4-201ENST00000375218 DIS3Q9Y2L1 958 aaKnown RBP11.2□□□□□ -0.62
UBR4-201ENST00000375218 NEUROD6Q96NK8 337 aa11.19□□□□□ -0.62
UBR4-201ENST00000375218 SPACA7Q96KW9 195 aa11.19□□□□□ -0.62
UBR4-201ENST00000375218 MKRN1Q9UHC7 482 aaKnown RBP11.19□□□□□ -0.62
UBR4-201ENST00000375218 CC2D1AQ6P1N0 951 aaPredicted RBP11.19□□□□□ -0.62
UBR4-201ENST00000375218 CALR3Q96L12 384 aaKnown RBP11.19□□□□□ -0.62
UBR4-201ENST00000375218 GPRASP1Q5JY77 1395 aa11.19□□□□□ -0.62
UBR4-201ENST00000375218 C3P01024 1663 aa11.19□□□□□ -0.62
UBR4-201ENST00000375218 EVA1CP58658 441 aa11.19□□□□□ -0.62
UBR4-201ENST00000375218 PROM2Q8N271 834 aa11.19□□□□□ -0.62
UBR4-201ENST00000375218 BANK1Q8NDB2 785 aa11.19□□□□□ -0.62
UBR4-201ENST00000375218 DHX38Q92620 1227 aaKnown RBP11.18□□□□□ -0.62
UBR4-201ENST00000375218 PES1O00541 588 aaKnown RBP11.18□□□□□ -0.62
UBR4-201ENST00000375218 UBR1Q8IWV7 1749 aa11.18□□□□□ -0.62
UBR4-201ENST00000375218 IPO8O15397 1037 aaKnown RBP11.17□□□□□ -0.62
UBR4-201ENST00000375218 TDO2P48775 406 aa11.17□□□□□ -0.62
UBR4-201ENST00000375218 C4orf46Q504U0 113 aa11.17□□□□□ -0.62
UBR4-201ENST00000375218 MFSD4BQ5TF39 518 aa11.17□□□□□ -0.62
UBR4-201ENST00000375218 TAGLNQ01995 201 aaKnown RBP11.17□□□□□ -0.62
UBR4-201ENST00000375218 EP400Q96L91 3159 aa11.16□□□□□ -0.62
UBR4-201ENST00000375218 TESK2Q96S53 571 aa11.16□□□□□ -0.62
UBR4-201ENST00000375218 NAP1L1P55209 391 aaKnown RBP11.16□□□□□ -0.62
UBR4-201ENST00000375218 SPATA31D1Q6ZQQ2 1576 aa11.15□□□□□ -0.62
UBR4-201ENST00000375218 CFAP69A5D8W1 941 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms