RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 DIS3Q9Y2L1 958 aaKnown RBP9.74□□□□□ -0.85
USP48-203ENST00000374732 PLA2R1Q13018 1463 aa9.74□□□□□ -0.85
USP48-203ENST00000374732 TROQ12816 1431 aaPredicted RBP9.73□□□□□ -0.85
USP48-203ENST00000374732 PLEKHH2Q8IVE3 1493 aa9.73□□□□□ -0.85
USP48-203ENST00000374732 BIRC2Q13490 618 aa9.73□□□□□ -0.85
USP48-203ENST00000374732 CADPS2Q86UW7 1296 aa9.73□□□□□ -0.85
USP48-203ENST00000374732 SKAP1Q86WV1 359 aa9.73□□□□□ -0.85
USP48-203ENST00000374732 AMOTL1Q8IY63 956 aa9.73□□□□□ -0.85
USP48-203ENST00000374732 MRRFQ96E11 262 aaKnown RBP9.73□□□□□ -0.85
USP48-203ENST00000374732 MAP3K20Q9NYL2 800 aaKnown RBP9.73□□□□□ -0.85
USP48-203ENST00000374732 ZBTB47Q9UFB7 747 aaPredicted RBP9.73□□□□□ -0.85
USP48-203ENST00000374732 FBXO9Q9UK97 447 aaPredicted RBP9.73□□□□□ -0.85
USP48-203ENST00000374732 WWC3Q9ULE0 1092 aa9.73□□□□□ -0.85
USP48-203ENST00000374732 E2F5Q15329 346 aa9.72□□□□□ -0.85
USP48-203ENST00000374732 SREK1Q8WXA9 508 aaKnown RBP9.72□□□□□ -0.85
USP48-203ENST00000374732 NBPF3Q9H094 633 aa9.72□□□□□ -0.85
USP48-203ENST00000374732 GOLGA6L3A6NEY3 463 aa9.72□□□□□ -0.85
USP48-203ENST00000374732 FAM200BP0CF97 657 aa9.72□□□□□ -0.85
USP48-203ENST00000374732 SIN3AQ96ST3 1273 aa9.72□□□□□ -0.85
USP48-203ENST00000374732 COMMD10Q9Y6G5 202 aa9.72□□□□□ -0.85
USP48-203ENST00000374732 KCNJ4P48050 445 aa9.72□□□□□ -0.85
USP48-203ENST00000374732 FAM210AQ96ND0 272 aa9.72□□□□□ -0.85
USP48-203ENST00000374732 C1orf131Q8NDD1 294 aaKnown RBP9.71□□□□□ -0.85
USP48-203ENST00000374732 SMC4Q9NTJ3 1288 aa9.71□□□□□ -0.85
USP48-203ENST00000374732 DAPK1P53355 1430 aa9.71□□□□□ -0.85
USP48-203ENST00000374732 PLXNC1O60486 1568 aa9.71□□□□□ -0.85
USP48-203ENST00000374732 FRAT1Q92837 279 aaPredicted RBP9.71□□□□□ -0.86
USP48-203ENST00000374732 CXorf56Q9H5V9 222 aa9.71□□□□□ -0.86
USP48-203ENST00000374732 FAN1Q9Y2M0 1017 aa9.71□□□□□ -0.86
USP48-203ENST00000374732 DIP2CQ9Y2E4 1556 aa9.7□□□□□ -0.86
USP48-203ENST00000374732 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.7□□□□□ -0.86
USP48-203ENST00000374732 RBM46Q8TBY0 533 aaKnown RBP9.7□□□□□ -0.86
USP48-203ENST00000374732 RANBP17Q9H2T7 1088 aaKnown RBP9.7□□□□□ -0.86
USP48-203ENST00000374732 SYNPO2Q9UMS6 1093 aa9.7□□□□□ -0.86
USP48-203ENST00000374732 IQSEC3Q9UPP2 1182 aaPredicted RBP9.7□□□□□ -0.86
USP48-203ENST00000374732 DNAJC21Q5F1R6 531 aaKnown RBP9.7□□□□□ -0.86
USP48-203ENST00000374732 C16orf87Q6PH81 154 aa9.7□□□□□ -0.86
USP48-203ENST00000374732 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.7□□□□□ -0.863e-8■■■■□ 23.3
USP48-203ENST00000374732 ABCC1P33527 1531 aa9.7□□□□□ -0.86
USP48-203ENST00000374732 NYAP1Q6ZVC0 841 aa9.69□□□□□ -0.86
USP48-203ENST00000374732 ABCC5O15440 1437 aa9.69□□□□□ -0.86
USP48-203ENST00000374732 COPB2P35606 906 aa9.69□□□□□ -0.86
USP48-203ENST00000374732 DUSP27Q5VZP5 1158 aa9.69□□□□□ -0.86
USP48-203ENST00000374732 ILDR1Q86SU0 546 aaPredicted RBP9.69□□□□□ -0.86
USP48-203ENST00000374732 RSPH1Q8WYR4 309 aa9.69□□□□□ -0.86
USP48-203ENST00000374732 PHF8Q9UPP1 1060 aa9.69□□□□□ -0.86
USP48-203ENST00000374732 TONSLQ96HA7 1378 aa9.69□□□□□ -0.86
USP48-203ENST00000374732 ADGBQ8N7X0 1667 aa9.69□□□□□ -0.86
USP48-203ENST00000374732 PPP4CP60510 307 aa9.69□□□□□ -0.86
USP48-203ENST00000374732 C22orf23Q9BZE7 217 aa9.69□□□□□ -0.86
USP48-203ENST00000374732 SETD1BQ9UPS6 1966 aaKnown RBP9.68□□□□□ -0.86
USP48-203ENST00000374732 HSP90AB2PQ58FF8 381 aa9.68□□□□□ -0.86
USP48-203ENST00000374732 ICE2Q659A1 982 aa9.68□□□□□ -0.86
USP48-203ENST00000374732 NCAPGQ9BPX3 1015 aa9.68□□□□□ -0.86
USP48-203ENST00000374732 HMGB1P1B2RPK0 211 aaPredicted RBP9.68□□□□□ -0.86
USP48-203ENST00000374732 IPO7O95373 1038 aaKnown RBP9.68□□□□□ -0.86
USP48-203ENST00000374732 ABCD1P33897 745 aa9.68□□□□□ -0.86
USP48-203ENST00000374732 FLT3P36888 993 aa9.68□□□□□ -0.86
USP48-203ENST00000374732 EVA1CP58658 441 aa9.68□□□□□ -0.86
USP48-203ENST00000374732 FAM161AQ3B820 660 aa9.68□□□□□ -0.86
USP48-203ENST00000374732 CCDC70Q6NSX1 233 aa9.68□□□□□ -0.86
USP48-203ENST00000374732 KIAA1107Q9UPP5 1409 aa9.68□□□□□ -0.86
USP48-203ENST00000374732 ADGRL2O95490 1459 aa9.67□□□□□ -0.86
USP48-203ENST00000374732 MKRN1Q9UHC7 482 aaKnown RBP9.67□□□□□ -0.86
USP48-203ENST00000374732 GPATCH8Q9UKJ3 1502 aaKnown RBP9.67□□□□□ -0.86
USP48-203ENST00000374732 SBNO2Q9Y2G9 1366 aa9.67□□□□□ -0.86
USP48-203ENST00000374732 CROCC2H7BZ55 1655 aa9.67□□□□□ -0.86
USP48-203ENST00000374732 SKILP12757 684 aa9.67□□□□□ -0.86
USP48-203ENST00000374732 ENOX1Q8TC92 643 aaKnown RBP9.67□□□□□ -0.86
USP48-203ENST00000374732 INO80Q9ULG1 1556 aaPredicted RBP9.67□□□□□ -0.86
USP48-203ENST00000374732 YEATS2Q9ULM3 1422 aa9.67□□□□□ -0.86
USP48-203ENST00000374732 TPM3P06753 285 aa9.66□□□□□ -0.86
USP48-203ENST00000374732 STRCQ7RTU9 1775 aa9.66□□□□□ -0.86
USP48-203ENST00000374732 EFCC1Q9HA90 598 aa9.66□□□□□ -0.86
USP48-203ENST00000374732 KDM5AP29375 1690 aaKnown RBP9.66□□□□□ -0.86
USP48-203ENST00000374732 KIF16BQ96L93 1317 aa9.66□□□□□ -0.86
USP48-203ENST00000374732 PPP1R12AO14974 1030 aaPredicted RBP9.66□□□□□ -0.86
USP48-203ENST00000374732 MECOMQ03112 1051 aa9.66□□□□□ -0.86
USP48-203ENST00000374732 SF3B2Q13435 895 aaKnown RBP9.66□□□□□ -0.86
USP48-203ENST00000374732 C4orf46Q504U0 113 aa9.66□□□□□ -0.86
USP48-203ENST00000374732 NUCKS1Q9H1E3 243 aaKnown RBP9.66□□□□□ -0.86
USP48-203ENST00000374732 RMI1Q9H9A7 625 aa9.66□□□□□ -0.86
USP48-203ENST00000374732 ZC3H13Q5T200 1668 aaKnown RBP9.65□□□□□ -0.86
USP48-203ENST00000374732 IPO9Q96P70 1041 aaKnown RBP9.65□□□□□ -0.86
USP48-203ENST00000374732 CHPF2Q9P2E5 772 aa9.65□□□□□ -0.86
USP48-203ENST00000374732 CAMSAP2Q08AD1 1489 aa9.65□□□□□ -0.86
USP48-203ENST00000374732 CTAGE5O15320 804 aa9.65□□□□□ -0.86
USP48-203ENST00000374732 NEUROD6Q96NK8 337 aa9.65□□□□□ -0.86
USP48-203ENST00000374732 RRP7BPQ9NSQ0 103 aa9.65□□□□□ -0.86
USP48-203ENST00000374732 G3BP2Q9UN86 482 aaKnown RBP9.65□□□□□ -0.86
USP48-203ENST00000374732 C3P01024 1663 aa9.65□□□□□ -0.87
USP48-203ENST00000374732 DEPDC5O75140 1603 aa9.65□□□□□ -0.87
USP48-203ENST00000374732 SIGLEC1Q9BZZ2 1709 aa9.65□□□□□ -0.87
USP48-203ENST00000374732 ECEL1O95672 775 aa9.64□□□□□ -0.87
USP48-203ENST00000374732 CD151P48509 253 aa9.64□□□□□ -0.87
USP48-203ENST00000374732 OGFOD1Q8N543 542 aa9.64□□□□□ -0.87
USP48-203ENST00000374732 LTBP4Q8N2S1 1624 aa9.64□□□□□ -0.87
USP48-203ENST00000374732 IPO5O00410 1097 aaKnown RBP9.64□□□□□ -0.87
USP48-203ENST00000374732 SHANK2Q9UPX8 1470 aa9.64□□□□□ -0.87
USP48-203ENST00000374732 KLHL33A6NCF5 533 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms