RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 LTBP4Q8N2S1 1624 aa17.78■□□□□ 0.44
PTPRF-202ENST00000372405 PANK1Q8TE04 598 aa17.78■□□□□ 0.44
PTPRF-202ENST00000372405 ERBB3P21860 1342 aa17.77■□□□□ 0.44
PTPRF-202ENST00000372405 CHL1O00533 1208 aa17.77■□□□□ 0.44
PTPRF-202ENST00000372405 VAMP4O75379 141 aa17.77■□□□□ 0.44
PTPRF-202ENST00000372405 RLBP1P12271 317 aa17.77■□□□□ 0.44
PTPRF-202ENST00000372405 ABCA3Q99758 1704 aa17.77■□□□□ 0.44
PTPRF-202ENST00000372405 CANXP27824 592 aaKnown RBP17.77■□□□□ 0.43
PTPRF-202ENST00000372405 SMC4Q9NTJ3 1288 aa17.77■□□□□ 0.43
PTPRF-202ENST00000372405 C8orf58Q8NAV2 365 aa17.76■□□□□ 0.43
PTPRF-202ENST00000372405 ABCC6O95255 1503 aa17.75■□□□□ 0.43
PTPRF-202ENST00000372405 CPDO75976 1380 aa17.75■□□□□ 0.43
PTPRF-202ENST00000372405 MAP3K5Q99683 1374 aa17.75■□□□□ 0.43
PTPRF-202ENST00000372405 FAM208AQ9UK61 1670 aaKnown RBP17.74■□□□□ 0.43
PTPRF-202ENST00000372405 KIAA0232Q92628 1395 aa17.74■□□□□ 0.43
PTPRF-202ENST00000372405 GNAT3A8MTJ3 354 aa17.74■□□□□ 0.43
PTPRF-202ENST00000372405 HTATSF1O43719 755 aaKnown RBP17.74■□□□□ 0.43
PTPRF-202ENST00000372405 ALDH1L2Q3SY69 923 aa17.74■□□□□ 0.43
PTPRF-202ENST00000372405 RTF1Q92541 710 aaKnown RBP17.74■□□□□ 0.43
PTPRF-202ENST00000372405 COG6Q9Y2V7 657 aa17.74■□□□□ 0.43
PTPRF-202ENST00000372405 ELL2O00472 640 aaPredicted RBP17.73■□□□□ 0.43
PTPRF-202ENST00000372405 CHRNA2Q15822 529 aa17.73■□□□□ 0.43
PTPRF-202ENST00000372405 IL17REQ8NFR9 667 aa17.73■□□□□ 0.43
PTPRF-202ENST00000372405 KRT24Q2M2I5 525 aa17.73■□□□□ 0.43
PTPRF-202ENST00000372405 TWISTNBQ3B726 338 aaPredicted RBP17.73■□□□□ 0.43
PTPRF-202ENST00000372405 ZNF428Q96B54 188 aa17.73■□□□□ 0.43
PTPRF-202ENST00000372405 ZKSCAN2Q63HK3 967 aa17.72■□□□□ 0.43
PTPRF-202ENST00000372405 CLUAP1Q96AJ1 413 aa17.72■□□□□ 0.43
PTPRF-202ENST00000372405 MIS18AQ9NYP9 233 aa17.72■□□□□ 0.43
PTPRF-202ENST00000372405 VIRMAQ69YN4 1812 aaKnown RBP17.72■□□□□ 0.43
PTPRF-202ENST00000372405 ROBO1Q9Y6N7 1651 aa17.72■□□□□ 0.43
PTPRF-202ENST00000372405 TRIM27P14373 513 aa17.71■□□□□ 0.43
PTPRF-202ENST00000372405 NOB1Q9ULX3 412 aaKnown RBP17.71■□□□□ 0.43
PTPRF-202ENST00000372405 BRPF1P55201 1214 aaPredicted RBP17.71■□□□□ 0.43
PTPRF-202ENST00000372405 TSHZ2Q9NRE2 1034 aa17.71■□□□□ 0.43
PTPRF-202ENST00000372405 CEMIPQ8WUJ3 1361 aa17.7■□□□□ 0.42
PTPRF-202ENST00000372405 MRPL50Q8N5N7 158 aaKnown RBP17.7■□□□□ 0.42
PTPRF-202ENST00000372405 ATF7IPQ6VMQ6 1270 aa17.69■□□□□ 0.42
PTPRF-202ENST00000372405 KDM2BQ8NHM5 1336 aa17.69■□□□□ 0.42
PTPRF-202ENST00000372405 KIF16BQ96L93 1317 aa17.69■□□□□ 0.42
PTPRF-202ENST00000372405 DZIP1LQ8IYY4 767 aaKnown RBP17.68■□□□□ 0.42
PTPRF-202ENST00000372405 TCERG1O14776 1098 aaKnown RBP17.68■□□□□ 0.42
PTPRF-202ENST00000372405 TSPYL4Q9UJ04 414 aa17.68■□□□□ 0.42
PTPRF-202ENST00000372405 NLRP2Q9NX02 1062 aa17.67■□□□□ 0.42
PTPRF-202ENST00000372405 MVPQ14764 893 aaKnown RBP17.66■□□□□ 0.42
PTPRF-202ENST00000372405 AMOTQ4VCS5 1084 aa17.66■□□□□ 0.42
PTPRF-202ENST00000372405 PLEKHO1Q53GL0 409 aaPredicted RBP17.66■□□□□ 0.42
PTPRF-202ENST00000372405 ZNF530Q6P9A1 599 aaPredicted RBP17.66■□□□□ 0.42
PTPRF-202ENST00000372405 LGR6Q9HBX8 967 aa17.66■□□□□ 0.42
PTPRF-202ENST00000372405 AHDC1Q5TGY3 1603 aaPredicted RBP17.66■□□□□ 0.42
PTPRF-202ENST00000372405 MEGF6O75095 1541 aa17.65■□□□□ 0.42
PTPRF-202ENST00000372405 AKAP4Q5JQC9 854 aa17.65■□□□□ 0.42
PTPRF-202ENST00000372405 FTSJ3Q8IY81 847 aaKnown RBP17.65■□□□□ 0.42
PTPRF-202ENST00000372405 ADAMTS7Q9UKP4 1686 aa17.65■□□□□ 0.42
PTPRF-202ENST00000372405 PRDM11Q9NQV5 511 aa17.64■□□□□ 0.41
PTPRF-202ENST00000372405 KDM3BQ7LBC6 1761 aa17.64■□□□□ 0.41
PTPRF-202ENST00000372405 IPO8O15397 1037 aaKnown RBP17.64■□□□□ 0.41
PTPRF-202ENST00000372405 TAF7Q15545 349 aaPredicted RBP17.64■□□□□ 0.41
PTPRF-202ENST00000372405 CSB-PGBD3P0DP91 1061 aa17.63■□□□□ 0.41
PTPRF-202ENST00000372405 MS4A1P11836 297 aa17.63■□□□□ 0.41
PTPRF-202ENST00000372405 TMEM57Q8N5G2 664 aa17.63■□□□□ 0.41
PTPRF-202ENST00000372405 COL5A2P05997 1499 aaPredicted RBP17.63■□□□□ 0.41
PTPRF-202ENST00000372405 MPRIPQ6WCQ1 1025 aa17.62■□□□□ 0.41
PTPRF-202ENST00000372405 ARHGAP45Q92619 1136 aa17.62■□□□□ 0.41
PTPRF-202ENST00000372405 SIPA1L3O60292 1781 aaPredicted RBP17.62■□□□□ 0.41
PTPRF-202ENST00000372405 BABAM1Q9NWV8 329 aa17.62■□□□□ 0.41
PTPRF-202ENST00000372405 PKD1L3Q7Z443 1732 aa17.62■□□□□ 0.41
PTPRF-202ENST00000372405 IGHDP01880 384 aa17.6■□□□□ 0.41
PTPRF-202ENST00000372405 CENPQQ7L2Z9 268 aaPredicted RBP17.6■□□□□ 0.41
PTPRF-202ENST00000372405 RAPGEF4Q8WZA2 1011 aa17.6■□□□□ 0.41
PTPRF-202ENST00000372405 PCDHB15Q9Y5E8 787 aa17.6■□□□□ 0.41
PTPRF-202ENST00000372405 COL22A1Q8NFW1 1626 aaPredicted RBP17.6■□□□□ 0.41
PTPRF-202ENST00000372405 OVOS2A0A0G2JMS6 1433 aa17.6■□□□□ 0.41
PTPRF-202ENST00000372405 WDR17Q8IZU2 1322 aa17.6■□□□□ 0.41
PTPRF-202ENST00000372405 RNMTO43148 476 aaKnown RBP17.6■□□□□ 0.41
PTPRF-202ENST00000372405 HAP1P54257 671 aaPredicted RBP17.6■□□□□ 0.41
PTPRF-202ENST00000372405 AAMPQ13685 434 aa17.6■□□□□ 0.41
PTPRF-202ENST00000372405 C1orf141Q5JVX7 400 aa17.6■□□□□ 0.41
PTPRF-202ENST00000372405 SKAP1Q86WV1 359 aa17.6■□□□□ 0.41
PTPRF-202ENST00000372405 SCN11AQ9UI33 1791 aa17.59■□□□□ 0.41
PTPRF-202ENST00000372405 ITPRIPQ8IWB1 547 aa17.59■□□□□ 0.41
PTPRF-202ENST00000372405 RGS12O14924 1447 aa17.59■□□□□ 0.41
PTPRF-202ENST00000372405 ABCC4O15439 1325 aa17.59■□□□□ 0.41
PTPRF-202ENST00000372405 TATP17735 454 aaPredicted RBP17.59■□□□□ 0.41
PTPRF-202ENST00000372405 PLEKHG2Q9H7P9 1386 aa17.58■□□□□ 0.4
PTPRF-202ENST00000372405 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.57■□□□□ 0.4
PTPRF-202ENST00000372405 DDX19BQ9UMR2 479 aa17.57■□□□□ 0.4
PTPRF-202ENST00000372405 KDM6AO15550 1401 aaPredicted RBP17.57■□□□□ 0.4
PTPRF-202ENST00000372405 COL16A1Q07092 1604 aaPredicted RBP17.57■□□□□ 0.4
PTPRF-202ENST00000372405 PARP4Q9UKK3 1724 aaKnown RBP17.56■□□□□ 0.4
PTPRF-202ENST00000372405 KCNQ3O43525 872 aa17.56■□□□□ 0.4
PTPRF-202ENST00000372405 PHLPP1O60346 1717 aa17.56■□□□□ 0.4
PTPRF-202ENST00000372405 PHKG2P15735 406 aa17.55■□□□□ 0.4
PTPRF-202ENST00000372405 TEFQ10587 303 aa17.55■□□□□ 0.4
PTPRF-202ENST00000372405 ZBTB40Q9NUA8 1239 aa17.55■□□□□ 0.4
PTPRF-202ENST00000372405 CACNA1FO60840 1977 aa17.55■□□□□ 0.4
PTPRF-202ENST00000372405 EIF4A1P60842 406 aaKnown RBP17.55■□□□□ 0.4
PTPRF-202ENST00000372405 TOM1L2Q6ZVM7 507 aa17.55■□□□□ 0.4
PTPRF-202ENST00000372405 CYP27B1O15528 508 aa17.54■□□□□ 0.4
PTPRF-202ENST00000372405 SLC4A2P04920 1241 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms