RNA–Protein interactions for RNA: ENST00000372232.7

ATG4A-203, Transcript of autophagy related 4A cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4A, Length 2,315 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-203ENST00000372232 SIGLEC1Q9BZZ2 1709 aa11.06□□□□□ -0.64
ATG4A-203ENST00000372232 WDR43Q15061 677 aaKnown RBP eCLIP11.06□□□□□ -0.64
ATG4A-203ENST00000372232 TMEM132EQ6IEE7 984 aa11.06□□□□□ -0.64
ATG4A-203ENST00000372232 PIK3C2BO00750 1634 aa11.06□□□□□ -0.64
ATG4A-203ENST00000372232 CARNS1A5YM72 827 aa11.06□□□□□ -0.64
ATG4A-203ENST00000372232 IDI1Q13907 227 aa11.06□□□□□ -0.64
ATG4A-203ENST00000372232 SNRKQ9NRH2 765 aa11.06□□□□□ -0.64
ATG4A-203ENST00000372232 POLR3EQ9NVU0 708 aa11.06□□□□□ -0.64
ATG4A-203ENST00000372232 BCCIPQ9P287 314 aaKnown RBP eCLIP11.06□□□□□ -0.64
ATG4A-203ENST00000372232 UQCRHLA0A096LP55 91 aa11.05□□□□□ -0.64
ATG4A-203ENST00000372232 UQCRHP07919 91 aa11.05□□□□□ -0.64
ATG4A-203ENST00000372232 MCM4P33991 863 aa11.05□□□□□ -0.64
ATG4A-203ENST00000372232 SLC20A2Q08357 652 aa11.05□□□□□ -0.64
ATG4A-203ENST00000372232 BECN1Q14457 450 aa11.05□□□□□ -0.64
ATG4A-203ENST00000372232 KDM2BQ8NHM5 1336 aa11.04□□□□□ -0.64
ATG4A-203ENST00000372232 IRX3P78415 501 aaPredicted RBP11.04□□□□□ -0.64
ATG4A-203ENST00000372232 HIC1Q14526 733 aa11.04□□□□□ -0.64
ATG4A-203ENST00000372232 SKAP1Q86WV1 359 aa11.04□□□□□ -0.64
ATG4A-203ENST00000372232 SLC52A1Q9NWF4 448 aa11.04□□□□□ -0.64
ATG4A-203ENST00000372232 CDK11BP21127 795 aaKnown RBP11.04□□□□□ -0.64
ATG4A-203ENST00000372232 OSBPP22059 807 aa11.03□□□□□ -0.64
ATG4A-203ENST00000372232 NUTM2DQ5VT03 806 aaPredicted RBP11.03□□□□□ -0.64
ATG4A-203ENST00000372232 ZC3H13Q5T200 1668 aaKnown RBP11.03□□□□□ -0.64
ATG4A-203ENST00000372232 NEXMIFQ5QGS0 1516 aa11.03□□□□□ -0.64
ATG4A-203ENST00000372232 PPP1R9BQ96SB3 815 aa11.03□□□□□ -0.64
ATG4A-203ENST00000372232 R3HCC1Q9Y3T6 440 aaKnown RBP11.03□□□□□ -0.64
ATG4A-203ENST00000372232 PITPNM1O00562 1244 aa11.02□□□□□ -0.65
ATG4A-203ENST00000372232 CCDC173Q0VFZ6 552 aa11.02□□□□□ -0.65
ATG4A-203ENST00000372232 DNTTIP2Q5QJE6 756 aaKnown RBP11.02□□□□□ -0.65
ATG4A-203ENST00000372232 FBXO31Q5XUX0 539 aaPredicted RBP11.02□□□□□ -0.65
ATG4A-203ENST00000372232 ZFYVE9O95405 1425 aa11.02□□□□□ -0.65
ATG4A-203ENST00000372232 PLEKHH1Q9ULM0 1364 aa11.01□□□□□ -0.65
ATG4A-203ENST00000372232 USP19O94966 1318 aa11.01□□□□□ -0.65
ATG4A-203ENST00000372232 SLC12A5Q9H2X9 1139 aa11.01□□□□□ -0.65
ATG4A-203ENST00000372232 ZNF521Q96K83 1311 aa11.01□□□□□ -0.65
ATG4A-203ENST00000372232 PRIM1P49642 420 aaKnown RBP11.01□□□□□ -0.65
ATG4A-203ENST00000372232 SKIV2LQ15477 1246 aaKnown RBP11.01□□□□□ -0.65
ATG4A-203ENST00000372232 SLKQ9H2G2 1235 aaPredicted RBP11.01□□□□□ -0.65
ATG4A-203ENST00000372232 MSNP26038 577 aaKnown RBP11□□□□□ -0.65
ATG4A-203ENST00000372232 CENPQQ7L2Z9 268 aaPredicted RBP11□□□□□ -0.65
ATG4A-203ENST00000372232 PUS7Q96PZ0 661 aaKnown RBP11□□□□□ -0.65
ATG4A-203ENST00000372232 QRICH2Q9H0J4 1663 aa11□□□□□ -0.65
ATG4A-203ENST00000372232 NSD3Q9BZ95 1437 aa11□□□□□ -0.65
ATG4A-203ENST00000372232 ZNF500O60304 480 aaPredicted RBP11□□□□□ -0.65
ATG4A-203ENST00000372232 FCHSD2O94868 740 aa11□□□□□ -0.65
ATG4A-203ENST00000372232 ARHGEF40Q8TER5 1519 aa10.99□□□□□ -0.65
ATG4A-203ENST00000372232 MMP14P50281 582 aa10.99□□□□□ -0.65
ATG4A-203ENST00000372232 FARP1Q9Y4F1 1045 aaPredicted RBP10.99□□□□□ -0.65
ATG4A-203ENST00000372232 EVC2Q86UK5 1308 aa10.99□□□□□ -0.65
ATG4A-203ENST00000372232 SPDYE5A6NIY4 337 aa10.98□□□□□ -0.65
ATG4A-203ENST00000372232 POM121CA8CG34 1229 aa10.98□□□□□ -0.65
ATG4A-203ENST00000372232 HS1BP3Q53T59 392 aa10.98□□□□□ -0.65
ATG4A-203ENST00000372232 DUSP27Q5VZP5 1158 aa10.98□□□□□ -0.65
ATG4A-203ENST00000372232 POLR3AO14802 1390 aaPredicted RBP10.97□□□□□ -0.65
ATG4A-203ENST00000372232 GOLGA2Q08379 1002 aa10.97□□□□□ -0.65
ATG4A-203ENST00000372232 CCDC146Q8IYE0 955 aa10.97□□□□□ -0.65
ATG4A-203ENST00000372232 DDX12PQ92771 950 aa10.97□□□□□ -0.65
ATG4A-203ENST00000372232 PHOX2BQ99453 314 aa10.97□□□□□ -0.65
ATG4A-203ENST00000372232 GDPD2Q9HCC8 539 aa10.97□□□□□ -0.65
ATG4A-203ENST00000372232 PREX1Q8TCU6 1659 aa10.97□□□□□ -0.65
ATG4A-203ENST00000372232 MDM2Q00987 491 aaPredicted RBP10.97□□□□□ -0.65
ATG4A-203ENST00000372232 MORC1Q86VD1 984 aa10.97□□□□□ -0.65
ATG4A-203ENST00000372232 KIF12Q96FN5 646 aa10.97□□□□□ -0.65
ATG4A-203ENST00000372232 TMEM131LA2VDJ0 1609 aa10.96□□□□□ -0.65
ATG4A-203ENST00000372232 IRX5P78411 483 aaPredicted RBP10.96□□□□□ -0.65
ATG4A-203ENST00000372232 SASS6Q6UVJ0 657 aa10.96□□□□□ -0.65
ATG4A-203ENST00000372232 CALR3Q96L12 384 aaKnown RBP10.96□□□□□ -0.65
ATG4A-203ENST00000372232 DNAJC2Q99543 621 aaKnown RBP10.96□□□□□ -0.65
ATG4A-203ENST00000372232 TULP4Q9NRJ4 1543 aa10.96□□□□□ -0.66
ATG4A-203ENST00000372232 APAF1O14727 1248 aa10.96□□□□□ -0.66
ATG4A-203ENST00000372232 PLIN1O60240 522 aa10.96□□□□□ -0.66
ATG4A-203ENST00000372232 CSPP1Q1MSJ5 1256 aa10.96□□□□□ -0.66
ATG4A-203ENST00000372232 CRBNQ96SW2 442 aa10.96□□□□□ -0.66
ATG4A-203ENST00000372232 CGNL1Q0VF96 1302 aa10.95□□□□□ -0.66
ATG4A-203ENST00000372232 NLRP1Q9C000 1473 aa10.95□□□□□ -0.66
ATG4A-203ENST00000372232 ARHGEF28Q8N1W1 1705 aaKnown RBP10.95□□□□□ -0.66
ATG4A-203ENST00000372232 SLFN5Q08AF3 891 aa10.95□□□□□ -0.66
ATG4A-203ENST00000372232 BEGAINQ9BUH8 593 aa10.95□□□□□ -0.66
ATG4A-203ENST00000372232 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.95□□□□□ -0.66
ATG4A-203ENST00000372232 CGNQ9P2M7 1197 aaKnown RBP10.95□□□□□ -0.66
ATG4A-203ENST00000372232 AGLP35573 1532 aa10.95□□□□□ -0.66
ATG4A-203ENST00000372232 REREQ9P2R6 1566 aa10.95□□□□□ -0.66
ATG4A-203ENST00000372232 DDX11L8A8MPP1 907 aa10.95□□□□□ -0.66
ATG4A-203ENST00000372232 PTGDRQ13258 359 aa10.95□□□□□ -0.66
ATG4A-203ENST00000372232 TRMT2AQ8IZ69 625 aaKnown RBP10.95□□□□□ -0.66
ATG4A-203ENST00000372232 STK26Q9P289 416 aa10.95□□□□□ -0.66
ATG4A-203ENST00000372232 ANKRD36BQ8N2N9 1353 aa10.94□□□□□ -0.66
ATG4A-203ENST00000372232 SAFB2Q14151 953 aaKnown RBP eCLIP10.94□□□□□ -0.66
ATG4A-203ENST00000372232 GAS2L3Q86XJ1 694 aa10.94□□□□□ -0.66
ATG4A-203ENST00000372232 NGEFQ8N5V2 710 aa10.94□□□□□ -0.66
ATG4A-203ENST00000372232 NLRP7Q8WX94 980 aa10.93□□□□□ -0.66
ATG4A-203ENST00000372232 GLMNQ92990 594 aa10.93□□□□□ -0.66
ATG4A-203ENST00000372232 TMUB1Q9BVT8 246 aa10.93□□□□□ -0.66
ATG4A-203ENST00000372232 SSTR3P32745 418 aaPredicted RBP10.93□□□□□ -0.66
ATG4A-203ENST00000372232 CBX1P83916 185 aa10.93□□□□□ -0.66
ATG4A-203ENST00000372232 NOL7Q9UMY1 257 aaKnown RBP10.93□□□□□ -0.66
ATG4A-203ENST00000372232 USP32Q8NFA0 1604 aa10.93□□□□□ -0.66
ATG4A-203ENST00000372232 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.92□□□□□ -0.66
ATG4A-203ENST00000372232 PTPRMP28827 1452 aa10.92□□□□□ -0.66
ATG4A-203ENST00000372232 MYO5BQ9ULV0 1848 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms