RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 SBF2Q86WG5 1849 aa19.95■□□□□ 0.78
COL9A1-204ENST00000370496 FAM196AQ6ZSG2 479 aa19.95■□□□□ 0.78
COL9A1-204ENST00000370496 DOT1LQ8TEK3 1739 aa19.94■□□□□ 0.78
COL9A1-204ENST00000370496 UPF1Q92900 1129 aaKnown RBP eCLIP19.94■□□□□ 0.78
COL9A1-204ENST00000370496 MYBBP1AQ9BQG0 1328 aaKnown RBP19.93■□□□□ 0.78
COL9A1-204ENST00000370496 MARCH10Q8NA82 808 aaPredicted RBP19.93■□□□□ 0.78
COL9A1-204ENST00000370496 ZCRB1Q8TBF4 217 aaKnown RBP19.93■□□□□ 0.78
COL9A1-204ENST00000370496 NHSQ6T4R5 1651 aa19.93■□□□□ 0.78
COL9A1-204ENST00000370496 PCDH11XQ9BZA7 1347 aa19.92■□□□□ 0.78
COL9A1-204ENST00000370496 PCDH11YQ9BZA8 1340 aa19.92■□□□□ 0.78
COL9A1-204ENST00000370496 KDRP35968 1356 aa19.92■□□□□ 0.78
COL9A1-204ENST00000370496 PLEKHG2Q9H7P9 1386 aa19.92■□□□□ 0.78
COL9A1-204ENST00000370496 U2SURPO15042 1029 aaKnown RBP19.92■□□□□ 0.78
COL9A1-204ENST00000370496 SULT6B1Q6IMI4 303 aa19.92■□□□□ 0.78
COL9A1-204ENST00000370496 AEBP1Q8IUX7 1158 aa19.92■□□□□ 0.78
COL9A1-204ENST00000370496 DDX54Q8TDD1 881 aaKnown RBP19.92■□□□□ 0.78
COL9A1-204ENST00000370496 SF3B2Q13435 895 aaKnown RBP19.91■□□□□ 0.78
COL9A1-204ENST00000370496 PRKRIP1Q9H875 184 aaPredicted RBP19.9■□□□□ 0.78
COL9A1-204ENST00000370496 BCL9O00512 1426 aa19.9■□□□□ 0.78
COL9A1-204ENST00000370496 SPG7Q9UQ90 795 aa19.89■□□□□ 0.77
COL9A1-204ENST00000370496 NUDCQ9Y266 331 aa19.89■□□□□ 0.77
COL9A1-204ENST00000370496 HMOX1P09601 288 aa19.88■□□□□ 0.77
COL9A1-204ENST00000370496 TRIM37O94972 964 aa19.87■□□□□ 0.77
COL9A1-204ENST00000370496 CCDC125Q86Z20 511 aa19.87■□□□□ 0.77
COL9A1-204ENST00000370496 TOGARAM1Q9Y4F4 1720 aa19.86■□□□□ 0.77
COL9A1-204ENST00000370496 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.85■□□□□ 0.77
COL9A1-204ENST00000370496 BTAF1O14981 1849 aa19.84■□□□□ 0.77
COL9A1-204ENST00000370496 KAT6BQ8WYB5 2073 aa19.84■□□□□ 0.77
COL9A1-204ENST00000370496 RGPD3A6NKT7 1758 aaPredicted RBP19.84■□□□□ 0.77
COL9A1-204ENST00000370496 RGPD4Q7Z3J3 1758 aa19.84■□□□□ 0.77
COL9A1-204ENST00000370496 ANP32CO43423 234 aa19.83■□□□□ 0.77
COL9A1-204ENST00000370496 U2AF1L5P0DN76 240 aaPredicted RBP19.83■□□□□ 0.77
COL9A1-204ENST00000370496 U2AF1Q01081 240 aaKnown RBP eCLIP19.83■□□□□ 0.77
COL9A1-204ENST00000370496 PLEKHO1Q53GL0 409 aaPredicted RBP19.83■□□□□ 0.77
COL9A1-204ENST00000370496 ACSBG1Q96GR2 724 aa19.83■□□□□ 0.77
COL9A1-204ENST00000370496 BAG6P46379 1132 aa19.83■□□□□ 0.76
COL9A1-204ENST00000370496 AMOTQ4VCS5 1084 aa19.83■□□□□ 0.76
COL9A1-204ENST00000370496 CYP27B1O15528 508 aa19.82■□□□□ 0.76
COL9A1-204ENST00000370496 ZNF530Q6P9A1 599 aaPredicted RBP19.82■□□□□ 0.76
COL9A1-204ENST00000370496 IFNL2Q8IZJ0 200 aa19.81■□□□□ 0.76
COL9A1-204ENST00000370496 ITGB4P16144 1822 aa19.8■□□□□ 0.76
COL9A1-204ENST00000370496 VIRMAQ69YN4 1812 aaKnown RBP19.8■□□□□ 0.76
COL9A1-204ENST00000370496 PHKG2P15735 406 aa19.8■□□□□ 0.76
COL9A1-204ENST00000370496 C1orf141Q5JVX7 400 aa19.8■□□□□ 0.76
COL9A1-204ENST00000370496 SYTL4Q96C24 671 aaPredicted RBP19.8■□□□□ 0.76
COL9A1-204ENST00000370496 BCL11BQ9C0K0 894 aaPredicted RBP19.8■□□□□ 0.76
COL9A1-204ENST00000370496 APBA3O96018 575 aa19.79■□□□□ 0.76
COL9A1-204ENST00000370496 PRKAR2BP31323 418 aa19.79■□□□□ 0.76
COL9A1-204ENST00000370496 RREB1Q92766 1687 aa19.78■□□□□ 0.76
COL9A1-204ENST00000370496 DEFB132Q7Z7B7 95 aa19.78■□□□□ 0.76
COL9A1-204ENST00000370496 RSPH6AQ9H0K4 717 aa19.78■□□□□ 0.76
COL9A1-204ENST00000370496 KCNQ2O43526 872 aa19.77■□□□□ 0.76
COL9A1-204ENST00000370496 SCN11AQ9UI33 1791 aa19.77■□□□□ 0.76
COL9A1-204ENST00000370496 HSP90AB1P08238 724 aaKnown RBP19.76■□□□□ 0.75
COL9A1-204ENST00000370496 WDR43Q15061 677 aaKnown RBP eCLIP19.76■□□□□ 0.75
COL9A1-204ENST00000370496 PRIM1P49642 420 aaKnown RBP19.75■□□□□ 0.75
COL9A1-204ENST00000370496 EN1Q05925 392 aaPredicted RBP19.75■□□□□ 0.75
COL9A1-204ENST00000370496 PTF1AQ7RTS3 328 aa19.75■□□□□ 0.75
COL9A1-204ENST00000370496 KDM6AO15550 1401 aaPredicted RBP19.75■□□□□ 0.75
COL9A1-204ENST00000370496 NUP188Q5SRE5 1749 aa19.75■□□□□ 0.75
COL9A1-204ENST00000370496 FCHSD2O94868 740 aa19.74■□□□□ 0.75
COL9A1-204ENST00000370496 NEFMP07197 916 aa19.74■□□□□ 0.75
COL9A1-204ENST00000370496 NKX1-1Q15270 411 aaPredicted RBP19.74■□□□□ 0.75
COL9A1-204ENST00000370496 MTHFSDQ2M296 383 aaKnown RBP19.73■□□□□ 0.75
COL9A1-204ENST00000370496 GAS2L2Q8NHY3 880 aa19.73■□□□□ 0.75
COL9A1-204ENST00000370496 AKAP4Q5JQC9 854 aa19.72■□□□□ 0.75
COL9A1-204ENST00000370496 DCAF5Q96JK2 942 aa19.72■□□□□ 0.75
COL9A1-204ENST00000370496 MAPK8IP3Q9UPT6 1336 aa19.72■□□□□ 0.75
COL9A1-204ENST00000370496 MAP3K5Q99683 1374 aa19.72■□□□□ 0.75
COL9A1-204ENST00000370496 ADAMTS7Q9UKP4 1686 aa19.71■□□□□ 0.75
COL9A1-204ENST00000370496 LY75O60449 1722 aa19.7■□□□□ 0.74
COL9A1-204ENST00000370496 EZH2Q15910 746 aaKnown RBP19.7■□□□□ 0.74
COL9A1-204ENST00000370496 MPRIPQ6WCQ1 1025 aa19.7■□□□□ 0.74
COL9A1-204ENST00000370496 PNNQ9H307 717 aaKnown RBP19.7■□□□□ 0.74
COL9A1-204ENST00000370496 TMOD3Q9NYL9 352 aa19.7■□□□□ 0.74
COL9A1-204ENST00000370496 DLG5Q8TDM6 1919 aa19.7■□□□□ 0.74
COL9A1-204ENST00000370496 PHACTR3Q96KR7 559 aa19.7■□□□□ 0.74
COL9A1-204ENST00000370496 MRC1P22897 1456 aa19.69■□□□□ 0.74
COL9A1-204ENST00000370496 CAMKK2Q96RR4 588 aa19.69■□□□□ 0.74
COL9A1-204ENST00000370496 MRS2Q9HD23 443 aa19.69■□□□□ 0.74
COL9A1-204ENST00000370496 PLSCR1O15162 318 aa19.68■□□□□ 0.74
COL9A1-204ENST00000370496 ERVV-2B6SEH9 535 aa19.67■□□□□ 0.74
COL9A1-204ENST00000370496 GNAT3A8MTJ3 354 aa19.66■□□□□ 0.74
COL9A1-204ENST00000370496 CABP4P57796 275 aa19.66■□□□□ 0.74
COL9A1-204ENST00000370496 PALLDQ8WX93 1383 aa19.66■□□□□ 0.74
COL9A1-204ENST00000370496 CCDC184Q52MB2 194 aa19.65■□□□□ 0.74
COL9A1-204ENST00000370496 PIGBQ92521 554 aa19.65■□□□□ 0.74
COL9A1-204ENST00000370496 PAPPAQ13219 1627 aa19.64■□□□□ 0.74
COL9A1-204ENST00000370496 SIPA1L3O60292 1781 aaPredicted RBP19.64■□□□□ 0.73
COL9A1-204ENST00000370496 PLEKHF1Q96S99 279 aa19.64■□□□□ 0.73
COL9A1-204ENST00000370496 C5P01031 1676 aa19.64■□□□□ 0.73
COL9A1-204ENST00000370496 RNMTO43148 476 aaKnown RBP19.63■□□□□ 0.73
COL9A1-204ENST00000370496 TXNRD1Q16881 649 aa19.63■□□□□ 0.73
COL9A1-204ENST00000370496 CCDC146Q8IYE0 955 aa19.63■□□□□ 0.73
COL9A1-204ENST00000370496 RTF1Q92541 710 aaKnown RBP19.63■□□□□ 0.73
COL9A1-204ENST00000370496 SMARCC1Q92922 1105 aaPredicted RBP19.62■□□□□ 0.73
COL9A1-204ENST00000370496 ADAMTS8Q9UP79 889 aa19.62■□□□□ 0.73
COL9A1-204ENST00000370496 DIEXFQ68CQ4 756 aaKnown RBP19.61■□□□□ 0.73
COL9A1-204ENST00000370496 SLC52A2Q9HAB3 445 aa19.61■□□□□ 0.73
COL9A1-204ENST00000370496 LGR6Q9HBX8 967 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms