RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 RBM28Q9NW13 759 aaKnown RBP10.52□□□□□ -0.72
SYNE1-209ENST00000367257 ABCC11Q96J66 1382 aa10.52□□□□□ -0.72
SYNE1-209ENST00000367257 RBM25P49756 843 aaKnown RBP10.52□□□□□ -0.73
SYNE1-209ENST00000367257 PPFIBP1Q86W92 1011 aa10.52□□□□□ -0.73
SYNE1-209ENST00000367257 CCAR1Q8IX12 1150 aaKnown RBP10.52□□□□□ -0.73
SYNE1-209ENST00000367257 PAIP2Q9BPZ3 127 aaKnown RBP10.52□□□□□ -0.73
SYNE1-209ENST00000367257 STK38Q15208 465 aa10.52□□□□□ -0.73
SYNE1-209ENST00000367257 SYCP1Q15431 976 aa10.52□□□□□ -0.73
SYNE1-209ENST00000367257 NEMFO60524 1076 aa10.52□□□□□ -0.73
SYNE1-209ENST00000367257 MCM5P33992 734 aa10.52□□□□□ -0.73
SYNE1-209ENST00000367257 CCDC94Q9BW85 323 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-209ENST00000367257 RPAP2Q8IXW5 612 aaPredicted RBP10.51□□□□□ -0.73
SYNE1-209ENST00000367257 CEP57L1Q8IYX8 460 aa10.51□□□□□ -0.73
SYNE1-209ENST00000367257 DYDC1Q8WWB3 177 aa10.51□□□□□ -0.73
SYNE1-209ENST00000367257 NACAP1Q9BZK3 213 aa10.51□□□□□ -0.73
SYNE1-209ENST00000367257 MINK1Q8N4C8 1332 aaPredicted RBP10.51□□□□□ -0.73
SYNE1-209ENST00000367257 TCOF1Q13428 1488 aaKnown RBP10.51□□□□□ -0.73
SYNE1-209ENST00000367257 GPRASP1Q5JY77 1395 aa10.51□□□□□ -0.73
SYNE1-209ENST00000367257 EIF2S2P20042 333 aaKnown RBP10.51□□□□□ -0.73
SYNE1-209ENST00000367257 CDK5RAP3Q96JB5 506 aa10.51□□□□□ -0.73
SYNE1-209ENST00000367257 BACH2Q9BYV9 841 aa10.51□□□□□ -0.73
SYNE1-209ENST00000367257 ATAD2Q6PL18 1390 aa10.51□□□□□ -0.73
SYNE1-209ENST00000367257 ELL2O00472 640 aaPredicted RBP10.51□□□□□ -0.73
SYNE1-209ENST00000367257 CCDC57Q2TAC2 916 aa10.51□□□□□ -0.73
SYNE1-209ENST00000367257 KLHL34Q8N239 644 aa10.51□□□□□ -0.73
SYNE1-209ENST00000367257 RBM33Q96EV2 1170 aaKnown RBP10.51□□□□□ -0.73
SYNE1-209ENST00000367257 SMC2O95347 1197 aa10.5□□□□□ -0.73
SYNE1-209ENST00000367257 MEX3CQ5U5Q3 659 aaKnown RBP10.5□□□□□ -0.73
SYNE1-209ENST00000367257 ANKRD30BQ9BXX2 1392 aa10.5□□□□□ -0.73
SYNE1-209ENST00000367257 FRMPD1Q5SYB0 1578 aa10.5□□□□□ -0.73
SYNE1-209ENST00000367257 CAVIN2O95810 425 aa10.5□□□□□ -0.73
SYNE1-209ENST00000367257 PPP2R1AP30153 589 aa10.5□□□□□ -0.73
SYNE1-209ENST00000367257 PDILTQ8N807 584 aa10.5□□□□□ -0.73
SYNE1-209ENST00000367257 WASHC4Q2M389 1173 aa10.5□□□□□ -0.73
SYNE1-209ENST00000367257 PLCD4Q9BRC7 762 aa10.5□□□□□ -0.73
SYNE1-209ENST00000367257 POTEB2H3BUK9 544 aa10.5□□□□□ -0.73
SYNE1-209ENST00000367257 PSME1Q06323 249 aa10.5□□□□□ -0.73
SYNE1-209ENST00000367257 CCDC158Q5M9N0 1113 aa10.5□□□□□ -0.73
SYNE1-209ENST00000367257 CYB5RLQ6IPT4 315 aa10.5□□□□□ -0.73
SYNE1-209ENST00000367257 CEP131Q9UPN4 1083 aa10.5□□□□□ -0.73
SYNE1-209ENST00000367257 PDZRN3Q9UPQ7 1066 aa10.5□□□□□ -0.73
SYNE1-209ENST00000367257 DESP17661 470 aa10.49□□□□□ -0.73
SYNE1-209ENST00000367257 WWC2Q6AWC2 1192 aa10.49□□□□□ -0.73
SYNE1-209ENST00000367257 PLB1Q6P1J6 1458 aa10.49□□□□□ -0.73
SYNE1-209ENST00000367257 EZRP15311 586 aaKnown RBP10.49□□□□□ -0.73
SYNE1-209ENST00000367257 NEK4P51957 841 aa10.49□□□□□ -0.73
SYNE1-209ENST00000367257 ITSN2Q9NZM3 1697 aa10.49□□□□□ -0.73
SYNE1-209ENST00000367257 RICTORQ6R327 1708 aa10.49□□□□□ -0.73
SYNE1-209ENST00000367257 GCC2Q8IWJ2 1684 aa10.49□□□□□ -0.73
SYNE1-209ENST00000367257 TNMDQ9H2S6 317 aa10.49□□□□□ -0.73
SYNE1-209ENST00000367257 ATP10BO94823 1461 aa10.49□□□□□ -0.73
SYNE1-209ENST00000367257 MAP9Q49MG5 647 aa10.49□□□□□ -0.73
SYNE1-209ENST00000367257 TCP11L2Q8N4U5 519 aa10.49□□□□□ -0.73
SYNE1-209ENST00000367257 LRRCC1Q9C099 1032 aa10.49□□□□□ -0.73
SYNE1-209ENST00000367257 DNAI2Q9GZS0 605 aa10.49□□□□□ -0.73
SYNE1-209ENST00000367257 DIP2BQ9P265 1576 aa10.49□□□□□ -0.73
SYNE1-209ENST00000367257 SUPT6HQ7KZ85 1726 aaKnown RBP10.49□□□□□ -0.73
SYNE1-209ENST00000367257 DHX37Q8IY37 1157 aaKnown RBP10.48□□□□□ -0.73
SYNE1-209ENST00000367257 ZNF622Q969S3 477 aaKnown RBP eCLIP10.48□□□□□ -0.73
SYNE1-209ENST00000367257 MYO5CQ9NQX4 1742 aa10.48□□□□□ -0.73
SYNE1-209ENST00000367257 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.48□□□□□ -0.73
SYNE1-209ENST00000367257 CCDC141Q6ZP82 1450 aa10.48□□□□□ -0.73
SYNE1-209ENST00000367257 CTAGE5O15320 804 aa10.48□□□□□ -0.73
SYNE1-209ENST00000367257 ZSCAN12O43309 604 aa10.48□□□□□ -0.73
SYNE1-209ENST00000367257 MVPQ14764 893 aaKnown RBP10.48□□□□□ -0.73
SYNE1-209ENST00000367257 KIF6Q6ZMV9 814 aa10.48□□□□□ -0.73
SYNE1-209ENST00000367257 PHAXQ9H814 394 aaKnown RBP10.48□□□□□ -0.73
SYNE1-209ENST00000367257 TWISTNBQ3B726 338 aaPredicted RBP10.47□□□□□ -0.73
SYNE1-209ENST00000367257 CCDC181Q5TID7 509 aa10.47□□□□□ -0.73
SYNE1-209ENST00000367257 MAST1Q9Y2H9 1570 aa10.47□□□□□ -0.73
SYNE1-209ENST00000367257 SURF6O75683 361 aaKnown RBP10.47□□□□□ -0.73
SYNE1-209ENST00000367257 MCM4P33991 863 aa10.47□□□□□ -0.73
SYNE1-209ENST00000367257 CCDC83Q8IWF9 413 aa10.47□□□□□ -0.73
SYNE1-209ENST00000367257 DDX11Q96FC9 970 aa10.47□□□□□ -0.73
SYNE1-209ENST00000367257 BCCIPQ9P287 314 aaKnown RBP eCLIP10.47□□□□□ -0.73
SYNE1-209ENST00000367257 CDK13Q14004 1512 aaKnown RBP10.47□□□□□ -0.73
SYNE1-209ENST00000367257 PRPF40AO75400 957 aaKnown RBP10.47□□□□□ -0.73
SYNE1-209ENST00000367257 SERPINC1P01008 464 aa10.47□□□□□ -0.73
SYNE1-209ENST00000367257 RNF214Q8ND24 703 aa10.47□□□□□ -0.73
SYNE1-209ENST00000367257 ADGBQ8N7X0 1667 aa10.46□□□□□ -0.73
SYNE1-209ENST00000367257 RAB11FIP3O75154 756 aa10.46□□□□□ -0.73
SYNE1-209ENST00000367257 TUBB4AP04350 444 aa10.46□□□□□ -0.73
SYNE1-209ENST00000367257 BANK1Q8NDB2 785 aa10.46□□□□□ -0.73
SYNE1-209ENST00000367257 PYM1Q9BRP8 204 aaKnown RBP10.46□□□□□ -0.73
SYNE1-209ENST00000367257 BMP2KQ9NSY1 1161 aaPredicted RBP10.46□□□□□ -0.73
SYNE1-209ENST00000367257 GOLGA6L9A6NEM1 432 aa10.46□□□□□ -0.73
SYNE1-209ENST00000367257 ATF7IPQ6VMQ6 1270 aa10.46□□□□□ -0.73
SYNE1-209ENST00000367257 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.46□□□□□ -0.73
SYNE1-209ENST00000367257 SH2B1Q9NRF2 756 aaPredicted RBP10.46□□□□□ -0.73
SYNE1-209ENST00000367257 CCDC91Q7Z6B0 441 aa10.46□□□□□ -0.74
SYNE1-209ENST00000367257 CCDC148Q8NFR7 591 aa10.46□□□□□ -0.74
SYNE1-209ENST00000367257 PANK1Q8TE04 598 aa10.46□□□□□ -0.74
SYNE1-209ENST00000367257 SLC52A1Q9NWF4 448 aa10.46□□□□□ -0.74
SYNE1-209ENST00000367257 JAKMIP3Q5VZ66 844 aa10.46□□□□□ -0.74
SYNE1-209ENST00000367257 NEUROD6Q96NK8 337 aa10.46□□□□□ -0.74
SYNE1-209ENST00000367257 ADAMTS8Q9UP79 889 aa10.46□□□□□ -0.74
SYNE1-209ENST00000367257 ARHGAP5Q13017 1502 aa10.46□□□□□ -0.74
SYNE1-209ENST00000367257 POLR3GO15318 223 aaPredicted RBP10.45□□□□□ -0.74
SYNE1-209ENST00000367257 GTF2F1P35269 517 aaKnown RBP eCLIP10.45□□□□□ -0.74
SYNE1-209ENST00000367257 SARNPP82979 210 aaKnown RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms