RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 A0A0U1RQG5 324 aaPredicted RBP4.91□□□□□ -1.62
USH2A-202ENST00000366942 CCDC85CA6NKD9 419 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 TPM1P09493 284 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 IRX3P78415 501 aaPredicted RBP4.91□□□□□ -1.62
USH2A-202ENST00000366942 SF3A1Q15459 793 aaKnown RBP4.91□□□□□ -1.62
USH2A-202ENST00000366942 TPD52L1Q16890 204 aaPredicted RBP4.91□□□□□ -1.62
USH2A-202ENST00000366942 CDK5RAP3Q96JB5 506 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 SSX2IPQ9Y2D8 614 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 ATP5J2-PTCD1G3V325 749 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 FOXO3O43524 673 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 NUTM2GQ5VZR2 741 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 DZIP1Q86YF9 867 aaKnown RBP4.9□□□□□ -1.62
USH2A-202ENST00000366942 RETREG2Q8NC44 543 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 RGS22Q8NE09 1264 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 MATR3P43243 847 aaKnown RBP eCLIP4.9□□□□□ -1.62
USH2A-202ENST00000366942 CBX1P83916 185 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 AKAP4Q5JQC9 854 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 RBM26Q5T8P6 1007 aaKnown RBP4.9□□□□□ -1.62
USH2A-202ENST00000366942 TLR3O15455 904 aaKnown RBP4.9□□□□□ -1.62
USH2A-202ENST00000366942 KRT18P05783 430 aaKnown RBP4.9□□□□□ -1.62
USH2A-202ENST00000366942 RNF20Q5VTR2 975 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 FAM9BQ8IZU0 186 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 IPO7O95373 1038 aaKnown RBP4.9□□□□□ -1.63
USH2A-202ENST00000366942 NBPF1Q3BBV0 1214 aa4.9□□□□□ -1.63
USH2A-202ENST00000366942 CCDC150Q8NCX0 1101 aa4.9□□□□□ -1.63
USH2A-202ENST00000366942 POLR3DP05423 398 aaPredicted RBP4.9□□□□□ -1.63
USH2A-202ENST00000366942 MPRIPQ6WCQ1 1025 aa4.9□□□□□ -1.63
USH2A-202ENST00000366942 DPF3Q92784 378 aa4.9□□□□□ -1.63
USH2A-202ENST00000366942 CDK19Q9BWU1 502 aa4.9□□□□□ -1.63
USH2A-202ENST00000366942 BMP2KQ9NSY1 1161 aaPredicted RBP4.9□□□□□ -1.63
USH2A-202ENST00000366942 ZNHIT6Q9NWK9 470 aaKnown RBP4.9□□□□□ -1.63
USH2A-202ENST00000366942 WDR7Q9Y4E6 1490 aa4.9□□□□□ -1.63
USH2A-202ENST00000366942 RIOK3O14730 519 aaKnown RBP4.89□□□□□ -1.63
USH2A-202ENST00000366942 TTLL7Q6ZT98 887 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 NUDT16Q96DE0 195 aaKnown RBP4.89□□□□□ -1.63
USH2A-202ENST00000366942 ARID3AQ99856 593 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 AS3MTQ9HBK9 375 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 AMOTL2Q9Y2J4 779 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 GNAI1P63096 354 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 ZFYVE27Q5T4F4 411 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 FRAT1Q92837 279 aaPredicted RBP4.89□□□□□ -1.63
USH2A-202ENST00000366942 DIAPH1O60610 1272 aaKnown RBP4.89□□□□□ -1.63
USH2A-202ENST00000366942 PLCG2P16885 1265 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 DALRD3Q5D0E6 543 aaKnown RBP4.89□□□□□ -1.63
USH2A-202ENST00000366942 NEUROD6Q96NK8 337 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 IPO9Q96P70 1041 aaKnown RBP4.89□□□□□ -1.63
USH2A-202ENST00000366942 SLKQ9H2G2 1235 aaPredicted RBP4.89□□□□□ -1.63
USH2A-202ENST00000366942 CENPJQ9HC77 1338 aaPredicted RBP4.89□□□□□ -1.63
USH2A-202ENST00000366942 C1orf228Q6PIY5 440 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 NUDT18Q6ZVK8 323 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 ERC2O15083 957 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 SEC24BO95487 1268 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 FAM161AQ3B820 660 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 SLAIN2Q9P270 581 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 ERICH6BQ5W0A0 696 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 SLC16A10Q8TF71 515 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 PTCD1O75127 700 aaKnown RBP4.88□□□□□ -1.63
USH2A-202ENST00000366942 KCNA6P17658 529 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 TXLNAP40222 546 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 USP5P45974 858 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 RSPH3Q86UC2 560 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 COA7Q96BR5 231 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 RAI14Q9P0K7 980 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 CEP126Q9P2H0 1117 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 ARHGEF10O15013 1369 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 AATKQ6ZMQ8 1374 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 EPS15P42566 896 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 PDE4CQ08493 712 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 PIBF1Q8WXW3 757 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 UIMC1Q96RL1 719 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 TCHPQ9BT92 498 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 PNMA3Q9UL41 463 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 KRT23Q9C075 422 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 DNAJC5BQ9UF47 199 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 TSPYL4Q9UJ04 414 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 KIF7Q2M1P5 1343 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 ZKSCAN1P17029 563 aaPredicted RBP4.88□□□□□ -1.63
USH2A-202ENST00000366942 ZNF804AQ7Z570 1209 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 IFNL2Q8IZJ0 200 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 FERMT1Q9BQL6 677 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 LRRCC1Q9C099 1032 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 EVA1BQ9NVM1 165 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 OFD1O75665 1012 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 SLU7O95391 586 aaKnown RBP4.87□□□□□ -1.63
USH2A-202ENST00000366942 CNGA1P29973 690 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 CEBPAP49715 358 aaPredicted RBP4.87□□□□□ -1.63
USH2A-202ENST00000366942 SPATA31A6Q5VVP1 1343 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 TTC21AQ8NDW8 1320 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 MYBBP1AQ9BQG0 1328 aaKnown RBP4.87□□□□□ -1.63
USH2A-202ENST00000366942 ACTN1P12814 892 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 API5Q9BZZ5 524 aaKnown RBP4.87□□□□□ -1.63
USH2A-202ENST00000366942 DIAPH3Q9NSV4 1193 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 HAUS2Q9NVX0 235 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 HMGB1P1B2RPK0 211 aaPredicted RBP4.87□□□□□ -1.63
USH2A-202ENST00000366942 ATP6V1AP38606 617 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 SREBF2Q12772 1141 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 AIMP1Q12904 312 aaKnown RBP4.87□□□□□ -1.63
USH2A-202ENST00000366942 PTGDRQ13258 359 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 TCP11L2Q8N4U5 519 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 CCDC155Q8N6L0 562 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms