RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 A0A0U1RQG5 324 aaPredicted RBP4.91□□□□□ -1.62
USH2A-202ENST00000366942 CCDC85CA6NKD9 419 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 TPM1P09493 284 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 IRX3P78415 501 aaPredicted RBP4.91□□□□□ -1.62
USH2A-202ENST00000366942 SF3A1Q15459 793 aaKnown RBP4.91□□□□□ -1.62
USH2A-202ENST00000366942 TPD52L1Q16890 204 aaPredicted RBP4.91□□□□□ -1.62
USH2A-202ENST00000366942 CDK5RAP3Q96JB5 506 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 SSX2IPQ9Y2D8 614 aa4.91□□□□□ -1.62
USH2A-202ENST00000366942 ATP5J2-PTCD1G3V325 749 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 FOXO3O43524 673 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 NUTM2GQ5VZR2 741 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 DZIP1Q86YF9 867 aaKnown RBP4.9□□□□□ -1.62
USH2A-202ENST00000366942 RETREG2Q8NC44 543 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 RGS22Q8NE09 1264 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 MATR3P43243 847 aaKnown RBP eCLIP4.9□□□□□ -1.62
USH2A-202ENST00000366942 CBX1P83916 185 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 AKAP4Q5JQC9 854 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 RBM26Q5T8P6 1007 aaKnown RBP4.9□□□□□ -1.62
USH2A-202ENST00000366942 TLR3O15455 904 aaKnown RBP4.9□□□□□ -1.62
USH2A-202ENST00000366942 KRT18P05783 430 aaKnown RBP4.9□□□□□ -1.62
USH2A-202ENST00000366942 RNF20Q5VTR2 975 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 FAM9BQ8IZU0 186 aa4.9□□□□□ -1.62
USH2A-202ENST00000366942 IPO7O95373 1038 aaKnown RBP4.9□□□□□ -1.63
USH2A-202ENST00000366942 NBPF1Q3BBV0 1214 aa4.9□□□□□ -1.63
USH2A-202ENST00000366942 CCDC150Q8NCX0 1101 aa4.9□□□□□ -1.63
USH2A-202ENST00000366942 POLR3DP05423 398 aaPredicted RBP4.9□□□□□ -1.63
USH2A-202ENST00000366942 MPRIPQ6WCQ1 1025 aa4.9□□□□□ -1.63
USH2A-202ENST00000366942 DPF3Q92784 378 aa4.9□□□□□ -1.63
USH2A-202ENST00000366942 CDK19Q9BWU1 502 aa4.9□□□□□ -1.63
USH2A-202ENST00000366942 BMP2KQ9NSY1 1161 aaPredicted RBP4.9□□□□□ -1.63
USH2A-202ENST00000366942 ZNHIT6Q9NWK9 470 aaKnown RBP4.9□□□□□ -1.63
USH2A-202ENST00000366942 WDR7Q9Y4E6 1490 aa4.9□□□□□ -1.63
USH2A-202ENST00000366942 RIOK3O14730 519 aaKnown RBP4.89□□□□□ -1.63
USH2A-202ENST00000366942 TTLL7Q6ZT98 887 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 NUDT16Q96DE0 195 aaKnown RBP4.89□□□□□ -1.63
USH2A-202ENST00000366942 ARID3AQ99856 593 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 AS3MTQ9HBK9 375 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 AMOTL2Q9Y2J4 779 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 GNAI1P63096 354 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 ZFYVE27Q5T4F4 411 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 FRAT1Q92837 279 aaPredicted RBP4.89□□□□□ -1.63
USH2A-202ENST00000366942 DIAPH1O60610 1272 aaKnown RBP4.89□□□□□ -1.63
USH2A-202ENST00000366942 PLCG2P16885 1265 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 DALRD3Q5D0E6 543 aaKnown RBP4.89□□□□□ -1.63
USH2A-202ENST00000366942 NEUROD6Q96NK8 337 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 IPO9Q96P70 1041 aaKnown RBP4.89□□□□□ -1.63
USH2A-202ENST00000366942 SLKQ9H2G2 1235 aaPredicted RBP4.89□□□□□ -1.63
USH2A-202ENST00000366942 CENPJQ9HC77 1338 aaPredicted RBP4.89□□□□□ -1.63
USH2A-202ENST00000366942 C1orf228Q6PIY5 440 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 NUDT18Q6ZVK8 323 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 ERC2O15083 957 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 SEC24BO95487 1268 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 FAM161AQ3B820 660 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 SLAIN2Q9P270 581 aa4.89□□□□□ -1.63
USH2A-202ENST00000366942 ERICH6BQ5W0A0 696 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 SLC16A10Q8TF71 515 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 PTCD1O75127 700 aaKnown RBP4.88□□□□□ -1.63
USH2A-202ENST00000366942 KCNA6P17658 529 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 TXLNAP40222 546 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 USP5P45974 858 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 RSPH3Q86UC2 560 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 COA7Q96BR5 231 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 RAI14Q9P0K7 980 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 CEP126Q9P2H0 1117 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 ARHGEF10O15013 1369 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 AATKQ6ZMQ8 1374 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 EPS15P42566 896 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 PDE4CQ08493 712 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 PIBF1Q8WXW3 757 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 UIMC1Q96RL1 719 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 TCHPQ9BT92 498 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 PNMA3Q9UL41 463 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 KRT23Q9C075 422 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 DNAJC5BQ9UF47 199 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 TSPYL4Q9UJ04 414 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 KIF7Q2M1P5 1343 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 ZKSCAN1P17029 563 aaPredicted RBP4.88□□□□□ -1.63
USH2A-202ENST00000366942 ZNF804AQ7Z570 1209 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 IFNL2Q8IZJ0 200 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 FERMT1Q9BQL6 677 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 LRRCC1Q9C099 1032 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 EVA1BQ9NVM1 165 aa4.88□□□□□ -1.63
USH2A-202ENST00000366942 OFD1O75665 1012 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 SLU7O95391 586 aaKnown RBP4.87□□□□□ -1.63
USH2A-202ENST00000366942 CNGA1P29973 690 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 CEBPAP49715 358 aaPredicted RBP4.87□□□□□ -1.63
USH2A-202ENST00000366942 SPATA31A6Q5VVP1 1343 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 TTC21AQ8NDW8 1320 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 MYBBP1AQ9BQG0 1328 aaKnown RBP4.87□□□□□ -1.63
USH2A-202ENST00000366942 ACTN1P12814 892 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 API5Q9BZZ5 524 aaKnown RBP4.87□□□□□ -1.63
USH2A-202ENST00000366942 DIAPH3Q9NSV4 1193 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 HAUS2Q9NVX0 235 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 HMGB1P1B2RPK0 211 aaPredicted RBP4.87□□□□□ -1.63
USH2A-202ENST00000366942 ATP6V1AP38606 617 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 SREBF2Q12772 1141 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 AIMP1Q12904 312 aaKnown RBP4.87□□□□□ -1.63
USH2A-202ENST00000366942 PTGDRQ13258 359 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 TCP11L2Q8N4U5 519 aa4.87□□□□□ -1.63
USH2A-202ENST00000366942 CCDC155Q8N6L0 562 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms