RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 HSPA6P17066 643 aa12.49□□□□□ -0.41
HMGB1P39-201ENST00000366304 SRPK2P78362 688 aaKnown RBP12.49□□□□□ -0.41
HMGB1P39-201ENST00000366304 NFAT5O94916 1531 aa12.48□□□□□ -0.41
HMGB1P39-201ENST00000366304 ABCC6O95255 1503 aa12.48□□□□□ -0.41
HMGB1P39-201ENST00000366304 BRD4O60885 1362 aaPredicted RBP12.48□□□□□ -0.41
HMGB1P39-201ENST00000366304 CSB-PGBD3P0DP91 1061 aa12.48□□□□□ -0.41
HMGB1P39-201ENST00000366304 ADCY9O60503 1353 aa12.47□□□□□ -0.41
HMGB1P39-201ENST00000366304 TUBGCP6Q96RT7 1819 aa12.47□□□□□ -0.41
HMGB1P39-201ENST00000366304 SLC16A10Q8TF71 515 aa12.47□□□□□ -0.41
HMGB1P39-201ENST00000366304 CCDC7Q96M83 1385 aa12.46□□□□□ -0.41
HMGB1P39-201ENST00000366304 ZNF526Q8TF50 670 aaPredicted RBP12.46□□□□□ -0.41
HMGB1P39-201ENST00000366304 TTC21BQ7Z4L5 1316 aa12.45□□□□□ -0.42
HMGB1P39-201ENST00000366304 PRKAR2AP13861 404 aaKnown RBP12.45□□□□□ -0.42
HMGB1P39-201ENST00000366304 POLD1P28340 1107 aa12.45□□□□□ -0.42
HMGB1P39-201ENST00000366304 QSER1Q2KHR3 1735 aa12.45□□□□□ -0.42
HMGB1P39-201ENST00000366304 RAB3GAP2Q9H2M9 1393 aa12.44□□□□□ -0.42
HMGB1P39-201ENST00000366304 GRIN3BO60391 1043 aa12.44□□□□□ -0.42
HMGB1P39-201ENST00000366304 STAC3Q96MF2 364 aa12.44□□□□□ -0.42
HMGB1P39-201ENST00000366304 GPBP1L1Q9HC44 474 aaPredicted RBP12.43□□□□□ -0.42
HMGB1P39-201ENST00000366304 TFCP2L1Q9NZI6 479 aa12.43□□□□□ -0.42
HMGB1P39-201ENST00000366304 NSD2O96028 1365 aa12.43□□□□□ -0.42
HMGB1P39-201ENST00000366304 ERBB3P21860 1342 aa12.42□□□□□ -0.42
HMGB1P39-201ENST00000366304 CENPJQ9HC77 1338 aaPredicted RBP12.42□□□□□ -0.42
HMGB1P39-201ENST00000366304 SLC27A3Q5K4L6 730 aa12.42□□□□□ -0.42
HMGB1P39-201ENST00000366304 MSL1Q68DK7 614 aa12.42□□□□□ -0.42
HMGB1P39-201ENST00000366304 COL23A1Q86Y22 540 aaPredicted RBP12.42□□□□□ -0.42
HMGB1P39-201ENST00000366304 DNAJC5GQ8N7S2 189 aa12.42□□□□□ -0.42
HMGB1P39-201ENST00000366304 NLRP2Q9NX02 1062 aa12.42□□□□□ -0.42
HMGB1P39-201ENST00000366304 QRICH2Q9H0J4 1663 aa12.42□□□□□ -0.42
HMGB1P39-201ENST00000366304 KIF3CO14782 793 aa12.41□□□□□ -0.42
HMGB1P39-201ENST00000366304 IL2RBP14784 551 aa12.41□□□□□ -0.42
HMGB1P39-201ENST00000366304 CHADLQ6NUI6 762 aa12.41□□□□□ -0.42
HMGB1P39-201ENST00000366304 KCNH5Q8NCM2 988 aa12.41□□□□□ -0.42
HMGB1P39-201ENST00000366304 PRIM1P49642 420 aaKnown RBP12.39□□□□□ -0.43
HMGB1P39-201ENST00000366304 KIAA1210Q9ULL0 1709 aa12.39□□□□□ -0.43
HMGB1P39-201ENST00000366304 DDX54Q8TDD1 881 aaKnown RBP12.38□□□□□ -0.43
HMGB1P39-201ENST00000366304 WWC3Q9ULE0 1092 aa12.38□□□□□ -0.43
HMGB1P39-201ENST00000366304 COL13A1Q5TAT6 717 aaPredicted RBP12.37□□□□□ -0.43
HMGB1P39-201ENST00000366304 AMIGO3Q86WK7 504 aa12.37□□□□□ -0.43
HMGB1P39-201ENST00000366304 ANKRD24Q8TF21 1146 aa12.37□□□□□ -0.43
HMGB1P39-201ENST00000366304 LY75O60449 1722 aa12.36□□□□□ -0.43
HMGB1P39-201ENST00000366304 TTC21AQ8NDW8 1320 aa12.36□□□□□ -0.43
HMGB1P39-201ENST00000366304 SMIM5Q71RC9 77 aa12.35□□□□□ -0.43
HMGB1P39-201ENST00000366304 NME9Q86XW9 330 aa12.35□□□□□ -0.43
HMGB1P39-201ENST00000366304 SYTL4Q96C24 671 aaPredicted RBP12.35□□□□□ -0.43
HMGB1P39-201ENST00000366304 CD2APQ9Y5K6 639 aa12.35□□□□□ -0.43
HMGB1P39-201ENST00000366304 USP31Q70CQ4 1352 aa12.34□□□□□ -0.43
HMGB1P39-201ENST00000366304 ANKRD36BQ8N2N9 1353 aa12.34□□□□□ -0.43
HMGB1P39-201ENST00000366304 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.34□□□□□ -0.43
HMGB1P39-201ENST00000366304 CCNL1Q9UK58 526 aaPredicted RBP12.34□□□□□ -0.43
HMGB1P39-201ENST00000366304 KTN1Q86UP2 1357 aaKnown RBP12.33□□□□□ -0.44
HMGB1P39-201ENST00000366304 HTRA3P83110 453 aa12.33□□□□□ -0.44
HMGB1P39-201ENST00000366304 DOT1LQ8TEK3 1739 aa12.33□□□□□ -0.44
HMGB1P39-201ENST00000366304 CD163L1Q9NR16 1453 aa12.33□□□□□ -0.44
HMGB1P39-201ENST00000366304 SBNO2Q9Y2G9 1366 aa12.32□□□□□ -0.44
HMGB1P39-201ENST00000366304 APLP1P51693 650 aa12.32□□□□□ -0.44
HMGB1P39-201ENST00000366304 EVC2Q86UK5 1308 aa12.32□□□□□ -0.44
HMGB1P39-201ENST00000366304 IGSF1Q8N6C5 1336 aa12.32□□□□□ -0.44
HMGB1P39-201ENST00000366304 USP54Q70EL1 1684 aa12.31□□□□□ -0.44
HMGB1P39-201ENST00000366304 LTN1O94822 1766 aa12.3□□□□□ -0.44
HMGB1P39-201ENST00000366304 KAT6BQ8WYB5 2073 aa12.3□□□□□ -0.44
HMGB1P39-201ENST00000366304 LTV1Q96GA3 475 aaPredicted RBP12.3□□□□□ -0.44
HMGB1P39-201ENST00000366304 FAM208AQ9UK61 1670 aaKnown RBP12.29□□□□□ -0.44
HMGB1P39-201ENST00000366304 MON2Q7Z3U7 1717 aa12.29□□□□□ -0.44
HMGB1P39-201ENST00000366304 TOGARAM1Q9Y4F4 1720 aa12.29□□□□□ -0.44
HMGB1P39-201ENST00000366304 MEGF6O75095 1541 aa12.29□□□□□ -0.44
HMGB1P39-201ENST00000366304 HAX1O00165 279 aa12.28□□□□□ -0.44
HMGB1P39-201ENST00000366304 FBLN1P23142 703 aa12.28□□□□□ -0.44
HMGB1P39-201ENST00000366304 NMRK2Q9NPI5 230 aa12.28□□□□□ -0.44
HMGB1P39-201ENST00000366304 CREBZFQ9NS37 354 aa12.28□□□□□ -0.44
HMGB1P39-201ENST00000366304 CICQ96RK0 1608 aaPredicted RBP12.28□□□□□ -0.44
HMGB1P39-201ENST00000366304 C5P01031 1676 aa12.27□□□□□ -0.45
HMGB1P39-201ENST00000366304 IP6K1Q92551 441 aa12.27□□□□□ -0.45
HMGB1P39-201ENST00000366304 TOMM70O94826 608 aa12.26□□□□□ -0.45
HMGB1P39-201ENST00000366304 JMYQ8N9B5 988 aa12.26□□□□□ -0.45
HMGB1P39-201ENST00000366304 ZCRB1Q8TBF4 217 aaKnown RBP12.26□□□□□ -0.45
HMGB1P39-201ENST00000366304 PCNTO95613 3336 aa12.26□□□□□ -0.45
HMGB1P39-201ENST00000366304 USP47Q96K76 1375 aa12.26□□□□□ -0.45
HMGB1P39-201ENST00000366304 KLRG1Q96E93 195 aa12.25□□□□□ -0.45
HMGB1P39-201ENST00000366304 WDR90Q96KV7 1748 aa12.25□□□□□ -0.45
HMGB1P39-201ENST00000366304 PRELPP51888 382 aa12.24□□□□□ -0.45
HMGB1P39-201ENST00000366304 KIAA1551Q9HCM1 1747 aa12.23□□□□□ -0.45
HMGB1P39-201ENST00000366304 PXDNLA1KZ92 1463 aa12.23□□□□□ -0.45
HMGB1P39-201ENST00000366304 PALLDQ8WX93 1383 aa12.23□□□□□ -0.45
HMGB1P39-201ENST00000366304 PHF14O94880 888 aa12.23□□□□□ -0.45
HMGB1P39-201ENST00000366304 TNS4Q8IZW8 715 aa12.23□□□□□ -0.45
HMGB1P39-201ENST00000366304 SLC12A5Q9H2X9 1139 aa12.23□□□□□ -0.45
HMGB1P39-201ENST00000366304 FARP1Q9Y4F1 1045 aaPredicted RBP12.23□□□□□ -0.45
HMGB1P39-201ENST00000366304 RGPD2P0DJD1 1756 aa12.23□□□□□ -0.45
HMGB1P39-201ENST00000366304 C4BP0C0L5 1744 aa12.23□□□□□ -0.45
HMGB1P39-201ENST00000366304 MAP3K19Q56UN5 1328 aa12.22□□□□□ -0.45
HMGB1P39-201ENST00000366304 NBPF6Q5VWK0 638 aa12.22□□□□□ -0.45
HMGB1P39-201ENST00000366304 USHBP1Q8N6Y0 703 aa12.22□□□□□ -0.45
HMGB1P39-201ENST00000366304 L3MBTL2Q969R5 705 aa12.22□□□□□ -0.45
HMGB1P39-201ENST00000366304 NBPF4Q96M43 638 aa12.22□□□□□ -0.45
HMGB1P39-201ENST00000366304 TAF1LQ8IZX4 1826 aa12.22□□□□□ -0.45
HMGB1P39-201ENST00000366304 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.21□□□□□ -0.45
HMGB1P39-201ENST00000366304 HOXC9P31274 260 aa12.21□□□□□ -0.45
HMGB1P39-201ENST00000366304 FLAD1Q8NFF5 587 aa12.21□□□□□ -0.45
HMGB1P39-201ENST00000366304 EDC4Q6P2E9 1401 aaKnown RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms