RNA–Protein interactions for RNA: ENST00000364739.1

RNU4-28P-201, Transcript of RNA, U4 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU4-28P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-28P-201ENST00000364739 KDF1Q8NAX2 398 aaPredicted RBP9.66□□□□□ -0.86
RNU4-28P-201ENST00000364739 ZNF592Q92610 1267 aa9.66□□□□□ -0.86
RNU4-28P-201ENST00000364739 TSEN34Q9BSV6 310 aaKnown RBP9.66□□□□□ -0.86
RNU4-28P-201ENST00000364739 LORP23490 312 aaPredicted RBP9.64□□□□□ -0.87
RNU4-28P-201ENST00000364739 ADH1AP07327 375 aa9.63□□□□□ -0.87
RNU4-28P-201ENST00000364739 ERVK-9P63128 1117 aa9.63□□□□□ -0.87
RNU4-28P-201ENST00000364739 CC2D2BQ6DHV5 1058 aa9.63□□□□□ -0.87
RNU4-28P-201ENST00000364739 INSM2Q96T92 566 aaPredicted RBP9.63□□□□□ -0.87
RNU4-28P-201ENST00000364739 A6NJR5 290 aa9.62□□□□□ -0.87
RNU4-28P-201ENST00000364739 FIGNL2A6NMB9 653 aa9.62□□□□□ -0.87
RNU4-28P-201ENST00000364739 SOX11P35716 441 aa9.62□□□□□ -0.87
RNU4-28P-201ENST00000364739 OXLD1Q5BKU9 147 aa9.62□□□□□ -0.87
RNU4-28P-201ENST00000364739 DOLKQ9UPQ8 538 aa9.62□□□□□ -0.87
RNU4-28P-201ENST00000364739 PTGIRP43119 386 aa9.61□□□□□ -0.87
RNU4-28P-201ENST00000364739 CTSOP43234 321 aaPredicted RBP9.61□□□□□ -0.87
RNU4-28P-201ENST00000364739 OSBPL3Q9H4L5 887 aa9.61□□□□□ -0.87
RNU4-28P-201ENST00000364739 ZNF777Q9ULD5 760 aaPredicted RBP9.61□□□□□ -0.87
RNU4-28P-201ENST00000364739 ATP5J2-PTCD1G3V325 749 aa9.6□□□□□ -0.87
RNU4-28P-201ENST00000364739 SPINT1O43278 529 aa9.6□□□□□ -0.87
RNU4-28P-201ENST00000364739 STAU1O95793 577 aaKnown RBP9.6□□□□□ -0.87
RNU4-28P-201ENST00000364739 VEGFBP49765 207 aa9.6□□□□□ -0.87
RNU4-28P-201ENST00000364739 PLPP7Q8NBV4 271 aa9.6□□□□□ -0.87
RNU4-28P-201ENST00000364739 ESF1Q9H501 851 aaKnown RBP9.6□□□□□ -0.87
RNU4-28P-201ENST00000364739 SOS2Q07890 1332 aaPredicted RBP9.59□□□□□ -0.87
RNU4-28P-201ENST00000364739 ERBB4Q15303 1308 aa9.59□□□□□ -0.87
RNU4-28P-201ENST00000364739 SKIP12755 728 aa9.59□□□□□ -0.87
RNU4-28P-201ENST00000364739 POLMQ9NP87 494 aaPredicted RBP9.59□□□□□ -0.87
RNU4-28P-201ENST00000364739 DNMT3LQ9UJW3 386 aa9.59□□□□□ -0.87
RNU4-28P-201ENST00000364739 CHIC2Q9UKJ5 165 aa9.59□□□□□ -0.87
RNU4-28P-201ENST00000364739 TTLL8A6PVC2 850 aa9.58□□□□□ -0.88
RNU4-28P-201ENST00000364739 TRAK2O60296 914 aa9.58□□□□□ -0.88
RNU4-28P-201ENST00000364739 MAN1A2O60476 641 aa9.58□□□□□ -0.88
RNU4-28P-201ENST00000364739 CCDC125Q86Z20 511 aa9.58□□□□□ -0.88
RNU4-28P-201ENST00000364739 DEPDC4Q8N2C3 294 aa9.58□□□□□ -0.88
RNU4-28P-201ENST00000364739 GLMNQ92990 594 aa9.58□□□□□ -0.88
RNU4-28P-201ENST00000364739 RAB6BQ9NRW1 208 aa9.58□□□□□ -0.88
RNU4-28P-201ENST00000364739 A0A1W2PRU2 124 aa9.57□□□□□ -0.88
RNU4-28P-201ENST00000364739 MEN1O00255 615 aa9.57□□□□□ -0.88
RNU4-28P-201ENST00000364739 TBC1D9Q6ZT07 1266 aa9.57□□□□□ -0.88
RNU4-28P-201ENST00000364739 UCN2Q96RP3 112 aa9.57□□□□□ -0.88
RNU4-28P-201ENST00000364739 MYCP01106 439 aaPredicted RBP9.56□□□□□ -0.88
RNU4-28P-201ENST00000364739 VSIG8P0DPA2 414 aa9.56□□□□□ -0.88
RNU4-28P-201ENST00000364739 USP4Q13107 963 aa9.56□□□□□ -0.88
RNU4-28P-201ENST00000364739 ZMYND15Q9H091 742 aa9.56□□□□□ -0.88
RNU4-28P-201ENST00000364739 ARHGEF10LQ9HCE6 1279 aa9.56□□□□□ -0.88
RNU4-28P-201ENST00000364739 MAP7D1Q3KQU3 841 aa9.54□□□□□ -0.88
RNU4-28P-201ENST00000364739 FOXD4L5Q5VV16 416 aaPredicted RBP9.54□□□□□ -0.88
RNU4-28P-201ENST00000364739 CYP2U1Q7Z449 544 aa9.54□□□□□ -0.88
RNU4-28P-201ENST00000364739 CALR3Q96L12 384 aaKnown RBP9.54□□□□□ -0.88
RNU4-28P-201ENST00000364739 NCOA4Q13772 614 aa9.53□□□□□ -0.88
RNU4-28P-201ENST00000364739 PRICKLE2Q7Z3G6 844 aa9.52□□□□□ -0.89
RNU4-28P-201ENST00000364739 RNF217Q8TC41 542 aa9.52□□□□□ -0.89
RNU4-28P-201ENST00000364739 TRIM52Q96A61 297 aa9.52□□□□□ -0.89
RNU4-28P-201ENST00000364739 TFIP11Q9UBB9 837 aaKnown RBP9.52□□□□□ -0.89
RNU4-28P-201ENST00000364739 USP17L5A8MUK1 530 aa9.51□□□□□ -0.89
RNU4-28P-201ENST00000364739 IL2RAP01589 272 aa9.51□□□□□ -0.89
RNU4-28P-201ENST00000364739 GNRH1P01148 92 aa9.5□□□□□ -0.89
RNU4-28P-201ENST00000364739 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.5□□□□□ -0.89
RNU4-28P-201ENST00000364739 CNKSR1Q969H4 720 aa9.5□□□□□ -0.89
RNU4-28P-201ENST00000364739 NLRP3Q96P20 1036 aa9.5□□□□□ -0.89
RNU4-28P-201ENST00000364739 RHOQP17081 205 aa9.49□□□□□ -0.89
RNU4-28P-201ENST00000364739 RNF144AP50876 292 aaPredicted RBP9.49□□□□□ -0.89
RNU4-28P-201ENST00000364739 CLN3Q13286 438 aa9.49□□□□□ -0.89
RNU4-28P-201ENST00000364739 EML3Q32P44 896 aa9.49□□□□□ -0.89
RNU4-28P-201ENST00000364739 NFATC2IPQ8NCF5 419 aa9.49□□□□□ -0.89
RNU4-28P-201ENST00000364739 SIRT1Q96EB6 747 aa9.49□□□□□ -0.89
RNU4-28P-201ENST00000364739 ETNK1Q9HBU6 452 aa9.49□□□□□ -0.89
RNU4-28P-201ENST00000364739 USP17L3A6NCW0 530 aa9.48□□□□□ -0.89
RNU4-28P-201ENST00000364739 USP17L4A6NCW7 530 aa9.48□□□□□ -0.89
RNU4-28P-201ENST00000364739 ATP9BO43861 1147 aa9.48□□□□□ -0.89
RNU4-28P-201ENST00000364739 PTSQ03393 145 aa9.48□□□□□ -0.89
RNU4-28P-201ENST00000364739 USP17L2Q6R6M4 530 aa9.48□□□□□ -0.89
RNU4-28P-201ENST00000364739 USP17L1Q7RTZ2 530 aa9.48□□□□□ -0.89
RNU4-28P-201ENST00000364739 PCDHGA11Q9Y5H2 935 aa9.48□□□□□ -0.89
RNU4-28P-201ENST00000364739 PALM3A6NDB9 673 aaPredicted RBP9.47□□□□□ -0.89
RNU4-28P-201ENST00000364739 ARID3CA6NKF2 412 aa9.47□□□□□ -0.89
RNU4-28P-201ENST00000364739 CENPCQ03188 943 aa9.47□□□□□ -0.89
RNU4-28P-201ENST00000364739 SLC27A3Q5K4L6 730 aa9.47□□□□□ -0.89
RNU4-28P-201ENST00000364739 LYSMD3Q7Z3D4 306 aa9.47□□□□□ -0.89
RNU4-28P-201ENST00000364739 ESYT1Q9BSJ8 1104 aa9.47□□□□□ -0.89
RNU4-28P-201ENST00000364739 NOD1Q9Y239 953 aa9.47□□□□□ -0.89
RNU4-28P-201ENST00000364739 SCNN1DP51172 638 aa9.46□□□□□ -0.9
RNU4-28P-201ENST00000364739 GTF2IP78347 998 aa9.46□□□□□ -0.9
RNU4-28P-201ENST00000364739 POU4F2Q12837 409 aa9.46□□□□□ -0.9
RNU4-28P-201ENST00000364739 C14orf37Q86TY3 774 aa9.46□□□□□ -0.9
RNU4-28P-201ENST00000364739 XAGE2Q96GT9 111 aa9.46□□□□□ -0.9
RNU4-28P-201ENST00000364739 PPP1R12CQ9BZL4 782 aa9.46□□□□□ -0.9
RNU4-28P-201ENST00000364739 SERTAD1Q9UHV2 236 aa9.46□□□□□ -0.9
RNU4-28P-201ENST00000364739 GDF10P55107 478 aa9.45□□□□□ -0.9
RNU4-28P-201ENST00000364739 GRIP2Q9C0E4 1043 aa9.45□□□□□ -0.9
RNU4-28P-201ENST00000364739 MKRN1Q9UHC7 482 aaKnown RBP9.45□□□□□ -0.9
RNU4-28P-201ENST00000364739 HRH3Q9Y5N1 445 aa9.45□□□□□ -0.9
RNU4-28P-201ENST00000364739 TMEM229AB2RXF0 380 aa9.44□□□□□ -0.9
RNU4-28P-201ENST00000364739 PPFIA3O75145 1194 aa9.44□□□□□ -0.9
RNU4-28P-201ENST00000364739 LMOD1P29536 600 aaPredicted RBP9.44□□□□□ -0.9
RNU4-28P-201ENST00000364739 PSME1Q06323 249 aa9.44□□□□□ -0.9
RNU4-28P-201ENST00000364739 KIAA1024Q9UPX6 916 aa9.44□□□□□ -0.9
RNU4-28P-201ENST00000364739 MAFBQ9Y5Q3 323 aaPredicted RBP9.44□□□□□ -0.9
RNU4-28P-201ENST00000364739 SENP3-EIF4A1A0A087X0R7 540 aa9.43□□□□□ -0.9
RNU4-28P-201ENST00000364739 LZTS3O60299 673 aaPredicted RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms