RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PTCH1Q13635 1447 aa14.95□□□□□ -0.02
CLIP3-201ENST00000360535 MSH6P52701 1360 aa14.95□□□□□ -0.02
CLIP3-201ENST00000360535 PRPF40AO75400 957 aaKnown RBP14.94□□□□□ -0.02
CLIP3-201ENST00000360535 ANP32BQ92688 251 aaKnown RBP14.94□□□□□ -0.02
CLIP3-201ENST00000360535 USP26Q9BXU7 913 aa14.94□□□□□ -0.02
CLIP3-201ENST00000360535 NASPP49321 788 aaPredicted RBP14.94□□□□□ -0.02
CLIP3-201ENST00000360535 RABEP1Q15276 862 aa14.94□□□□□ -0.02
CLIP3-201ENST00000360535 ANKRD44Q8N8A2 993 aa14.94□□□□□ -0.02
CLIP3-201ENST00000360535 MED14O60244 1454 aa14.94□□□□□ -0.02
CLIP3-201ENST00000360535 NUTM2GQ5VZR2 741 aa14.94□□□□□ -0.02
CLIP3-201ENST00000360535 RILPL2Q969X0 211 aa14.94□□□□□ -0.02
CLIP3-201ENST00000360535 TSPYL4Q9UJ04 414 aa14.94□□□□□ -0.02
CLIP3-201ENST00000360535 NCOA3Q9Y6Q9 1424 aa14.94□□□□□ -0.02
CLIP3-201ENST00000360535 CLCN1P35523 988 aa14.93□□□□□ -0.02
CLIP3-201ENST00000360535 RTF1Q92541 710 aaKnown RBP14.93□□□□□ -0.02
CLIP3-201ENST00000360535 RBM27Q9P2N5 1060 aaKnown RBP14.93□□□□□ -0.02
CLIP3-201ENST00000360535 KIF20BQ96Q89 1820 aa14.93□□□□□ -0.02
CLIP3-201ENST00000360535 NEO1Q92859 1461 aa14.93□□□□□ -0.02
CLIP3-201ENST00000360535 TRIM6-TRIM34B2RNG4 842 aa14.93□□□□□ -0.02
CLIP3-201ENST00000360535 PREX1Q8TCU6 1659 aa14.93□□□□□ -0.02
CLIP3-201ENST00000360535 ZBTB7CA1YPR0 619 aa14.93□□□□□ -0.02
CLIP3-201ENST00000360535 LTV1Q96GA3 475 aaPredicted RBP14.93□□□□□ -0.02
CLIP3-201ENST00000360535 EDC4Q6P2E9 1401 aaKnown RBP14.92□□□□□ -0.02
CLIP3-201ENST00000360535 ST18O60284 1047 aa14.91□□□□□ -0.02
CLIP3-201ENST00000360535 NEK4P51957 841 aa14.91□□□□□ -0.02
CLIP3-201ENST00000360535 PRR36Q9H6K5 1346 aa14.91□□□□□ -0.02
CLIP3-201ENST00000360535 SLC26A8Q96RN1 970 aa14.91□□□□□ -0.02
CLIP3-201ENST00000360535 ANKRD26Q9UPS8 1709 aa14.91□□□□□ -0.02
CLIP3-201ENST00000360535 CPS1P31327 1500 aa14.91□□□□□ -0.02
CLIP3-201ENST00000360535 RPAP2Q8IXW5 612 aaPredicted RBP14.91□□□□□ -0.02
CLIP3-201ENST00000360535 ACEP12821 1306 aa14.9□□□□□ -0.02
CLIP3-201ENST00000360535 PIK3R4Q99570 1358 aa14.9□□□□□ -0.02
CLIP3-201ENST00000360535 FKBP5Q13451 457 aaPredicted RBP14.9□□□□□ -0.02
CLIP3-201ENST00000360535 CHL1O00533 1208 aa14.89□□□□□ -0.03
CLIP3-201ENST00000360535 DLG5Q8TDM6 1919 aa14.89□□□□□ -0.03
CLIP3-201ENST00000360535 C14orf37Q86TY3 774 aa14.89□□□□□ -0.03
CLIP3-201ENST00000360535 MAP4K4O95819 1239 aaPredicted RBP14.88□□□□□ -0.03
CLIP3-201ENST00000360535 AMPHP49418 695 aa14.88□□□□□ -0.03
CLIP3-201ENST00000360535 NUCB2P80303 420 aa14.88□□□□□ -0.03
CLIP3-201ENST00000360535 ANO2Q9NQ90 1003 aa14.88□□□□□ -0.03
CLIP3-201ENST00000360535 TSPOAP1O95153 1857 aa14.88□□□□□ -0.03
CLIP3-201ENST00000360535 ATP7BP35670 1465 aa14.88□□□□□ -0.03
CLIP3-201ENST00000360535 RTL1A6NKG5 1358 aa14.88□□□□□ -0.03
CLIP3-201ENST00000360535 REC8O95072 547 aa14.88□□□□□ -0.03
CLIP3-201ENST00000360535 TTC21BQ7Z4L5 1316 aa14.88□□□□□ -0.03
CLIP3-201ENST00000360535 HMMRO75330 724 aa14.88□□□□□ -0.03
CLIP3-201ENST00000360535 MTHFSDQ2M296 383 aaKnown RBP14.88□□□□□ -0.03
CLIP3-201ENST00000360535 RNF214Q8ND24 703 aa14.88□□□□□ -0.03
CLIP3-201ENST00000360535 ERC2O15083 957 aa14.87□□□□□ -0.03
CLIP3-201ENST00000360535 DTNBO60941 627 aa14.87□□□□□ -0.03
CLIP3-201ENST00000360535 KLHL40Q2TBA0 621 aa14.87□□□□□ -0.03
CLIP3-201ENST00000360535 STK31Q9BXU1 1019 aa14.87□□□□□ -0.03
CLIP3-201ENST00000360535 IL1RAPL2Q9NP60 686 aa14.87□□□□□ -0.03
CLIP3-201ENST00000360535 UPF3BQ9BZI7 483 aaKnown RBP14.87□□□□□ -0.03
CLIP3-201ENST00000360535 A2ML1A8K2U0 1454 aa14.86□□□□□ -0.03
CLIP3-201ENST00000360535 CPSF1Q10570 1443 aaKnown RBP14.86□□□□□ -0.03
CLIP3-201ENST00000360535 PTMSP20962 102 aa14.86□□□□□ -0.03
CLIP3-201ENST00000360535 PDE1AP54750 535 aa14.86□□□□□ -0.03
CLIP3-201ENST00000360535 HAP1P54257 671 aaPredicted RBP14.86□□□□□ -0.03
CLIP3-201ENST00000360535 ZSCAN23Q3MJ62 389 aa14.86□□□□□ -0.03
CLIP3-201ENST00000360535 NGDNQ8NEJ9 315 aaKnown RBP14.86□□□□□ -0.03
CLIP3-201ENST00000360535 CDK12Q9NYV4 1490 aaPredicted RBP14.85□□□□□ -0.03
CLIP3-201ENST00000360535 MPNDQ8N594 471 aa14.85□□□□□ -0.03
CLIP3-201ENST00000360535 LARP6Q9BRS8 491 aaKnown RBP14.85□□□□□ -0.03
CLIP3-201ENST00000360535 MSNP26038 577 aaKnown RBP14.85□□□□□ -0.03
CLIP3-201ENST00000360535 PRIM1P49642 420 aaKnown RBP14.85□□□□□ -0.03
CLIP3-201ENST00000360535 LMBRD1Q9NUN5 540 aa14.85□□□□□ -0.03
CLIP3-201ENST00000360535 KNDC1Q76NI1 1749 aa14.85□□□□□ -0.03
CLIP3-201ENST00000360535 MAP3K19Q56UN5 1328 aa14.85□□□□□ -0.03
CLIP3-201ENST00000360535 RICTORQ6R327 1708 aa14.84□□□□□ -0.03
CLIP3-201ENST00000360535 SYCE3A1L190 88 aa14.84□□□□□ -0.03
CLIP3-201ENST00000360535 GDPD2Q9HCC8 539 aa14.84□□□□□ -0.03
CLIP3-201ENST00000360535 ISY1Q9ULR0 285 aaKnown RBP14.84□□□□□ -0.03
CLIP3-201ENST00000360535 ATP10DQ9P241 1426 aa14.84□□□□□ -0.03
CLIP3-201ENST00000360535 CLTCQ00610 1675 aaKnown RBP14.84□□□□□ -0.03
CLIP3-201ENST00000360535 PNMA6EA0A0J9YXQ4 647 aa14.84□□□□□ -0.03
CLIP3-201ENST00000360535 GNAI2P04899 355 aa14.84□□□□□ -0.03
CLIP3-201ENST00000360535 RBSNQ9H1K0 784 aa14.84□□□□□ -0.03
CLIP3-201ENST00000360535 NSFL1CQ9UNZ2 370 aaKnown RBP14.84□□□□□ -0.03
CLIP3-201ENST00000360535 AATKQ6ZMQ8 1374 aa14.83□□□□□ -0.04
CLIP3-201ENST00000360535 PALD1Q9ULE6 856 aa14.83□□□□□ -0.04
CLIP3-201ENST00000360535 EIF2S2P20042 333 aaKnown RBP14.83□□□□□ -0.04
CLIP3-201ENST00000360535 CCDC173Q0VFZ6 552 aa14.83□□□□□ -0.04
CLIP3-201ENST00000360535 HSP90AA2PQ14568 343 aaPredicted RBP14.83□□□□□ -0.04
CLIP3-201ENST00000360535 NUTM1Q86Y26 1132 aa14.83□□□□□ -0.04
CLIP3-201ENST00000360535 PTPRCP08575 1304 aa14.82□□□□□ -0.04
CLIP3-201ENST00000360535 GPT2Q8TD30 523 aa14.82□□□□□ -0.04
CLIP3-201ENST00000360535 TMX3Q96JJ7 454 aa14.82□□□□□ -0.04
CLIP3-201ENST00000360535 ZDHHC9Q9Y397 364 aa14.82□□□□□ -0.04
CLIP3-201ENST00000360535 CEBPAP49715 358 aaPredicted RBP14.82□□□□□ -0.04
CLIP3-201ENST00000360535 USHBP1Q8N6Y0 703 aa14.82□□□□□ -0.04
CLIP3-201ENST00000360535 LRRFIP2Q9Y608 721 aaKnown RBP14.82□□□□□ -0.04
CLIP3-201ENST00000360535 CDC42BPGQ6DT37 1551 aa14.82□□□□□ -0.04
CLIP3-201ENST00000360535 PKNOX2Q96KN3 472 aa14.82□□□□□ -0.04
CLIP3-201ENST00000360535 LRRCC1Q9C099 1032 aa14.82□□□□□ -0.04
CLIP3-201ENST00000360535 HDGFP51858 240 aaKnown RBP14.81□□□□□ -0.04
CLIP3-201ENST00000360535 VSIG10Q8N0Z9 540 aa14.81□□□□□ -0.04
CLIP3-201ENST00000360535 ROBO2Q9HCK4 1378 aa14.81□□□□□ -0.04
CLIP3-201ENST00000360535 UNC5CLQ8IV45 518 aa14.81□□□□□ -0.04
CLIP3-201ENST00000360535 MX1P20591 662 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms