RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 EXOSC9Q06265 439 aaKnown RBP30.07■■■□□ 2.4
SDF4-202ENST00000360001 MAP3K5Q99683 1374 aa30.07■■■□□ 2.4
SDF4-202ENST00000360001 RTF1Q92541 710 aaKnown RBP30.06■■■□□ 2.4
SDF4-202ENST00000360001 GNAT3A8MTJ3 354 aa30.06■■■□□ 2.4
SDF4-202ENST00000360001 CRB1P82279 1406 aa30.05■■■□□ 2.4
SDF4-202ENST00000360001 CERKQ8TCT0 537 aa30.05■■■□□ 2.4
SDF4-202ENST00000360001 LRRC37A3O60309 1634 aa30.04■■■□□ 2.4
SDF4-202ENST00000360001 WDR17Q8IZU2 1322 aa30.04■■■□□ 2.4
SDF4-202ENST00000360001 PLEKHO1Q53GL0 409 aaPredicted RBP30.04■■■□□ 2.4
SDF4-202ENST00000360001 ERICH6BQ5W0A0 696 aa30.04■■■□□ 2.4
SDF4-202ENST00000360001 MBIPQ9NS73 344 aa30.04■■■□□ 2.4
SDF4-202ENST00000360001 CT47B1P0C2W7 299 aaPredicted RBP30.03■■■□□ 2.4
SDF4-202ENST00000360001 AMOTQ4VCS5 1084 aa30.03■■■□□ 2.4
SDF4-202ENST00000360001 PLIN1O60240 522 aa30.02■■■□□ 2.4
SDF4-202ENST00000360001 BCAR3O75815 825 aa30.02■■■□□ 2.4
SDF4-202ENST00000360001 RARSP54136 660 aaKnown RBP30.01■■■□□ 2.4
SDF4-202ENST00000360001 COL14A1Q05707 1796 aaKnown RBP30■■■□□ 2.39
SDF4-202ENST00000360001 MEGF6O75095 1541 aa29.99■■■□□ 2.39
SDF4-202ENST00000360001 RAPGEF4Q8WZA2 1011 aa29.99■■■□□ 2.39
SDF4-202ENST00000360001 CHL1O00533 1208 aa29.99■■■□□ 2.39
SDF4-202ENST00000360001 ZNF530Q6P9A1 599 aaPredicted RBP29.99■■■□□ 2.39
SDF4-202ENST00000360001 IL17REQ8NFR9 667 aa29.99■■■□□ 2.39
SDF4-202ENST00000360001 AKAP4Q5JQC9 854 aa29.97■■■□□ 2.39
SDF4-202ENST00000360001 PLEKHG2Q9H7P9 1386 aa29.97■■■□□ 2.39
SDF4-202ENST00000360001 TATP17735 454 aaPredicted RBP29.95■■■□□ 2.39
SDF4-202ENST00000360001 TOM1L2Q6ZVM7 507 aa29.95■■■□□ 2.39
SDF4-202ENST00000360001 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.95■■■□□ 2.38
SDF4-202ENST00000360001 CEMIPQ8WUJ3 1361 aa29.94■■■□□ 2.38
SDF4-202ENST00000360001 STRN4Q9NRL3 753 aa29.94■■■□□ 2.38
SDF4-202ENST00000360001 LARP1Q6PKG0 1096 aaKnown RBP29.93■■■□□ 2.38
SDF4-202ENST00000360001 CARD10Q9BWT7 1032 aa29.93■■■□□ 2.38
SDF4-202ENST00000360001 BTG4Q9NY30 223 aa29.93■■■□□ 2.38
SDF4-202ENST00000360001 EVA1CP58658 441 aa29.92■■■□□ 2.38
SDF4-202ENST00000360001 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.92■■■□□ 2.38
SDF4-202ENST00000360001 PKD1L3Q7Z443 1732 aa29.92■■■□□ 2.38
SDF4-202ENST00000360001 C1orf141Q5JVX7 400 aa29.92■■■□□ 2.38
SDF4-202ENST00000360001 TSPYL6Q8N831 410 aa29.91■■■□□ 2.38
SDF4-202ENST00000360001 C20orf194Q5TEA3 1177 aa29.9■■■□□ 2.38
SDF4-202ENST00000360001 BCL2L13Q9BXK5 485 aa29.9■■■□□ 2.38
SDF4-202ENST00000360001 LGR6Q9HBX8 967 aa29.9■■■□□ 2.38
SDF4-202ENST00000360001 VIRMAQ69YN4 1812 aaKnown RBP29.89■■■□□ 2.38
SDF4-202ENST00000360001 OVOS2A0A0G2JMS6 1433 aa29.89■■■□□ 2.38
SDF4-202ENST00000360001 VAMP4O75379 141 aa29.89■■■□□ 2.38
SDF4-202ENST00000360001 C8orf58Q8NAV2 365 aa29.89■■■□□ 2.38
SDF4-202ENST00000360001 MIS18AQ9NYP9 233 aa29.89■■■□□ 2.38
SDF4-202ENST00000360001 PARP4Q9UKK3 1724 aaKnown RBP29.88■■■□□ 2.37
SDF4-202ENST00000360001 SPG7Q9UQ90 795 aa29.88■■■□□ 2.37
SDF4-202ENST00000360001 ADAMTS7Q9UKP4 1686 aa29.88■■■□□ 2.37
SDF4-202ENST00000360001 SSH1Q8WYL5 1049 aa29.88■■■□□ 2.37
SDF4-202ENST00000360001 TSPYL4Q9UJ04 414 aa29.88■■■□□ 2.37
SDF4-202ENST00000360001 MPRIPQ6WCQ1 1025 aa29.87■■■□□ 2.37
SDF4-202ENST00000360001 ZNF428Q96B54 188 aa29.87■■■□□ 2.37
SDF4-202ENST00000360001 TAF7Q15545 349 aaPredicted RBP29.86■■■□□ 2.37
SDF4-202ENST00000360001 TWISTNBQ3B726 338 aaPredicted RBP29.86■■■□□ 2.37
SDF4-202ENST00000360001 PPP4R2Q9NY27 417 aa29.86■■■□□ 2.37
SDF4-202ENST00000360001 PLCH1Q4KWH8 1693 aa29.86■■■□□ 2.37
SDF4-202ENST00000360001 ADAMTS2O95450 1211 aa29.86■■■□□ 2.37
SDF4-202ENST00000360001 RNMTO43148 476 aaKnown RBP29.85■■■□□ 2.37
SDF4-202ENST00000360001 EXOC6Q8TAG9 804 aa29.85■■■□□ 2.37
SDF4-202ENST00000360001 BABAM1Q9NWV8 329 aa29.85■■■□□ 2.37
SDF4-202ENST00000360001 ELL2O00472 640 aaPredicted RBP29.84■■■□□ 2.37
SDF4-202ENST00000360001 ALDH1L2Q3SY69 923 aa29.84■■■□□ 2.37
SDF4-202ENST00000360001 SMC4Q9NTJ3 1288 aa29.84■■■□□ 2.37
SDF4-202ENST00000360001 JCADQ9P266 1359 aa29.84■■■□□ 2.37
SDF4-202ENST00000360001 NUTM2BA6NNL0 878 aaPredicted RBP29.83■■■□□ 2.37
SDF4-202ENST00000360001 NUTM2EB1AL46 878 aaPredicted RBP29.83■■■□□ 2.37
SDF4-202ENST00000360001 PHKG2P15735 406 aa29.83■■■□□ 2.37
SDF4-202ENST00000360001 KRT24Q2M2I5 525 aa29.83■■■□□ 2.37
SDF4-202ENST00000360001 NUTM2AQ8IVF1 878 aaPredicted RBP29.83■■■□□ 2.37
SDF4-202ENST00000360001 FRAT1Q92837 279 aaPredicted RBP29.83■■■□□ 2.37
SDF4-202ENST00000360001 CRBNQ96SW2 442 aa29.83■■■□□ 2.37
SDF4-202ENST00000360001 IL2RBP14784 551 aa29.81■■■□□ 2.36
SDF4-202ENST00000360001 CYP27B1O15528 508 aa29.81■■■□□ 2.36
SDF4-202ENST00000360001 CANXP27824 592 aaKnown RBP29.81■■■□□ 2.36
SDF4-202ENST00000360001 IFNL2Q8IZJ0 200 aa29.81■■■□□ 2.36
SDF4-202ENST00000360001 NRAPQ86VF7 1730 aa29.8■■■□□ 2.36
SDF4-202ENST00000360001 SCN11AQ9UI33 1791 aa29.8■■■□□ 2.36
SDF4-202ENST00000360001 KDM6AO15550 1401 aaPredicted RBP29.79■■■□□ 2.36
SDF4-202ENST00000360001 PDE3AQ14432 1141 aa29.79■■■□□ 2.36
SDF4-202ENST00000360001 TEFQ10587 303 aa29.79■■■□□ 2.36
SDF4-202ENST00000360001 SIPA1L3O60292 1781 aaPredicted RBP29.78■■■□□ 2.36
SDF4-202ENST00000360001 KDM3BQ7LBC6 1761 aa29.78■■■□□ 2.36
SDF4-202ENST00000360001 BRPF1P55201 1214 aaPredicted RBP29.77■■■□□ 2.36
SDF4-202ENST00000360001 ZCRB1Q8TBF4 217 aaKnown RBP29.77■■■□□ 2.36
SDF4-202ENST00000360001 USP35Q9P2H5 1018 aa29.77■■■□□ 2.36
SDF4-202ENST00000360001 SHANK3Q9BYB0 1731 aa29.76■■■□□ 2.35
SDF4-202ENST00000360001 NWD2Q9ULI1 1742 aa29.76■■■□□ 2.35
SDF4-202ENST00000360001 MRPL50Q8N5N7 158 aaKnown RBP29.75■■■□□ 2.35
SDF4-202ENST00000360001 KIF16BQ96L93 1317 aa29.74■■■□□ 2.35
SDF4-202ENST00000360001 ZKSCAN2Q63HK3 967 aa29.74■■■□□ 2.35
SDF4-202ENST00000360001 TNNQ9UQP3 1299 aa29.74■■■□□ 2.35
SDF4-202ENST00000360001 SLIT2O94813 1529 aa29.74■■■□□ 2.35
SDF4-202ENST00000360001 PCDH11XQ9BZA7 1347 aa29.74■■■□□ 2.35
SDF4-202ENST00000360001 PCDH11YQ9BZA8 1340 aa29.74■■■□□ 2.35
SDF4-202ENST00000360001 NOB1Q9ULX3 412 aaKnown RBP29.73■■■□□ 2.35
SDF4-202ENST00000360001 DISP2A7MBM2 1401 aa29.73■■■□□ 2.35
SDF4-202ENST00000360001 PANK1Q8TE04 598 aa29.72■■■□□ 2.35
SDF4-202ENST00000360001 DCAF5Q96JK2 942 aa29.72■■■□□ 2.35
SDF4-202ENST00000360001 BTBD11A6QL63 1104 aa29.72■■■□□ 2.35
SDF4-202ENST00000360001 HSP90AB1P08238 724 aaKnown RBP29.72■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms