RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 MEGF6O75095 1541 aa26.02■■□□□ 1.76
CLN3-205ENST00000359984 SLIT2O94813 1529 aa26.02■■□□□ 1.76
CLN3-205ENST00000359984 TRMT2AQ8IZ69 625 aaKnown RBP26.02■■□□□ 1.76
CLN3-205ENST00000359984 THUMPD2Q9BTF0 503 aaKnown RBP26.02■■□□□ 1.76
CLN3-205ENST00000359984 DCTN1Q14203 1278 aa26.01■■□□□ 1.75
CLN3-205ENST00000359984 DUSP27Q5VZP5 1158 aa26.01■■□□□ 1.75
CLN3-205ENST00000359984 C8orf37Q96NL8 207 aa26.01■■□□□ 1.75
CLN3-205ENST00000359984 NGLY1Q96IV0 654 aa26■■□□□ 1.75
CLN3-205ENST00000359984 IL16Q14005 1332 aa25.99■■□□□ 1.75
CLN3-205ENST00000359984 NRAPQ86VF7 1730 aa25.99■■□□□ 1.75
CLN3-205ENST00000359984 GNAT3A8MTJ3 354 aa25.98■■□□□ 1.75
CLN3-205ENST00000359984 ZNF530Q6P9A1 599 aaPredicted RBP25.98■■□□□ 1.75
CLN3-205ENST00000359984 MCM10Q7L590 875 aa25.98■■□□□ 1.75
CLN3-205ENST00000359984 USP35Q9P2H5 1018 aa25.98■■□□□ 1.75
CLN3-205ENST00000359984 MAP3K5Q99683 1374 aa25.98■■□□□ 1.75
CLN3-205ENST00000359984 NWD2Q9ULI1 1742 aa25.97■■□□□ 1.75
CLN3-205ENST00000359984 PLEKHG2Q9H7P9 1386 aa25.97■■□□□ 1.75
CLN3-205ENST00000359984 HTATSF1O43719 755 aaKnown RBP25.97■■□□□ 1.75
CLN3-205ENST00000359984 RTF1Q92541 710 aaKnown RBP25.97■■□□□ 1.75
CLN3-205ENST00000359984 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.97■■□□□ 1.75
CLN3-205ENST00000359984 IL2RBP14784 551 aa25.96■■□□□ 1.75
CLN3-205ENST00000359984 CALD1Q05682 793 aaKnown RBP25.96■■□□□ 1.75
CLN3-205ENST00000359984 FNBP4Q8N3X1 1017 aaPredicted RBP25.96■■□□□ 1.75
CLN3-205ENST00000359984 SPG7Q9UQ90 795 aa25.96■■□□□ 1.75
CLN3-205ENST00000359984 OVOS2A0A0G2JMS6 1433 aa25.96■■□□□ 1.75
CLN3-205ENST00000359984 AKAP4Q5JQC9 854 aa25.95■■□□□ 1.74
CLN3-205ENST00000359984 UNC5CLQ8IV45 518 aa25.94■■□□□ 1.74
CLN3-205ENST00000359984 MEX3CQ5U5Q3 659 aaKnown RBP25.94■■□□□ 1.74
CLN3-205ENST00000359984 BCL9LQ86UU0 1499 aa25.93■■□□□ 1.74
CLN3-205ENST00000359984 C1orf141Q5JVX7 400 aa25.93■■□□□ 1.74
CLN3-205ENST00000359984 IL17REQ8NFR9 667 aa25.93■■□□□ 1.74
CLN3-205ENST00000359984 MYH16Q9H6N6 1097 aa25.93■■□□□ 1.74
CLN3-205ENST00000359984 SPATA31A1Q5TZJ5 1347 aa25.91■■□□□ 1.74
CLN3-205ENST00000359984 PARP4Q9UKK3 1724 aaKnown RBP25.91■■□□□ 1.74
CLN3-205ENST00000359984 TSR2Q969E8 191 aaKnown RBP25.91■■□□□ 1.74
CLN3-205ENST00000359984 LAS1LQ9Y4W2 734 aaKnown RBP25.91■■□□□ 1.74
CLN3-205ENST00000359984 ZNF853P0CG23 659 aa25.9■■□□□ 1.74
CLN3-205ENST00000359984 FBXO41Q8TF61 875 aa25.9■■□□□ 1.74
CLN3-205ENST00000359984 IFT57Q9NWB7 429 aa25.9■■□□□ 1.74
CLN3-205ENST00000359984 PKD1L3Q7Z443 1732 aa25.9■■□□□ 1.74
CLN3-205ENST00000359984 SPATA31A5Q5VU36 1347 aa25.9■■□□□ 1.74
CLN3-205ENST00000359984 SPATA31A7Q8IWB4 1347 aa25.9■■□□□ 1.74
CLN3-205ENST00000359984 ZCRB1Q8TBF4 217 aaKnown RBP25.89■■□□□ 1.74
CLN3-205ENST00000359984 FANCIQ9NVI1 1328 aa25.89■■□□□ 1.74
CLN3-205ENST00000359984 DISP2A7MBM2 1401 aa25.89■■□□□ 1.73
CLN3-205ENST00000359984 GNAI1P63096 354 aa25.89■■□□□ 1.73
CLN3-205ENST00000359984 CFAP44Q96MT7 982 aa25.89■■□□□ 1.73
CLN3-205ENST00000359984 LGR6Q9HBX8 967 aa25.89■■□□□ 1.73
CLN3-205ENST00000359984 CYP27B1O15528 508 aa25.88■■□□□ 1.73
CLN3-205ENST00000359984 PHKG2P15735 406 aa25.88■■□□□ 1.73
CLN3-205ENST00000359984 USP21Q9UK80 565 aa25.88■■□□□ 1.73
CLN3-205ENST00000359984 MPRIPQ6WCQ1 1025 aa25.87■■□□□ 1.73
CLN3-205ENST00000359984 IFNL2Q8IZJ0 200 aa25.87■■□□□ 1.73
CLN3-205ENST00000359984 THRAP3Q9Y2W1 955 aaKnown RBP25.87■■□□□ 1.73
CLN3-205ENST00000359984 CCDC9Q9Y3X0 531 aaKnown RBP25.87■■□□□ 1.73
CLN3-205ENST00000359984 VPS72Q15906 364 aa25.87■■□□□ 1.73
CLN3-205ENST00000359984 CEMIPQ8WUJ3 1361 aa25.87■■□□□ 1.73
CLN3-205ENST00000359984 RNMTO43148 476 aaKnown RBP25.85■■□□□ 1.73
CLN3-205ENST00000359984 MBIPQ9NS73 344 aa25.85■■□□□ 1.73
CLN3-205ENST00000359984 AFF2P51816 1311 aa25.85■■□□□ 1.73
CLN3-205ENST00000359984 LRRC37A3O60309 1634 aa25.84■■□□□ 1.73
CLN3-205ENST00000359984 CHL1O00533 1208 aa25.84■■□□□ 1.73
CLN3-205ENST00000359984 PCDH11XQ9BZA7 1347 aa25.84■■□□□ 1.73
CLN3-205ENST00000359984 PCDH11YQ9BZA8 1340 aa25.84■■□□□ 1.73
CLN3-205ENST00000359984 RCAN3Q9UKA8 241 aa25.83■■□□□ 1.72
CLN3-205ENST00000359984 CDCA7Q9BWT1 371 aaPredicted RBP25.82■■□□□ 1.72
CLN3-205ENST00000359984 SUPT16HQ9Y5B9 1047 aaKnown RBP25.82■■□□□ 1.72
CLN3-205ENST00000359984 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.81■■□□□ 1.72
CLN3-205ENST00000359984 BARGINQ6ZT62 677 aa25.81■■□□□ 1.72
CLN3-205ENST00000359984 EXOSC9Q06265 439 aaKnown RBP25.81■■□□□ 1.72
CLN3-205ENST00000359984 DDX54Q8TDD1 881 aaKnown RBP25.81■■□□□ 1.72
CLN3-205ENST00000359984 MIS18AQ9NYP9 233 aa25.81■■□□□ 1.72
CLN3-205ENST00000359984 KDM6AO15550 1401 aaPredicted RBP25.8■■□□□ 1.72
CLN3-205ENST00000359984 HSP90AB1P08238 724 aaKnown RBP25.8■■□□□ 1.72
CLN3-205ENST00000359984 TAF7Q15545 349 aaPredicted RBP25.8■■□□□ 1.72
CLN3-205ENST00000359984 WNK3Q9BYP7 1800 aa25.8■■□□□ 1.72
CLN3-205ENST00000359984 SHANK3Q9BYB0 1731 aa25.79■■□□□ 1.72
CLN3-205ENST00000359984 ADAMTS7Q9UKP4 1686 aa25.79■■□□□ 1.72
CLN3-205ENST00000359984 DCAF5Q96JK2 942 aa25.79■■□□□ 1.72
CLN3-205ENST00000359984 TEFQ10587 303 aa25.79■■□□□ 1.72
CLN3-205ENST00000359984 EXOC5O00471 708 aa25.78■■□□□ 1.72
CLN3-205ENST00000359984 TSPYL4Q9UJ04 414 aa25.78■■□□□ 1.72
CLN3-205ENST00000359984 NKX1-1Q15270 411 aaPredicted RBP25.77■■□□□ 1.72
CLN3-205ENST00000359984 BABAM1Q9NWV8 329 aa25.77■■□□□ 1.72
CLN3-205ENST00000359984 FAM98CQ17RN3 349 aaKnown RBP25.76■■□□□ 1.71
CLN3-205ENST00000359984 VIRMAQ69YN4 1812 aaKnown RBP25.74■■□□□ 1.71
CLN3-205ENST00000359984 TNS2Q63HR2 1409 aa25.74■■□□□ 1.71
CLN3-205ENST00000359984 SCN11AQ9UI33 1791 aa25.74■■□□□ 1.71
CLN3-205ENST00000359984 TRPC5Q9UL62 973 aaPredicted RBP25.74■■□□□ 1.71
CLN3-205ENST00000359984 ATRNO75882 1429 aa25.74■■□□□ 1.71
CLN3-205ENST00000359984 CT47B1P0C2W7 299 aaPredicted RBP25.73■■□□□ 1.71
CLN3-205ENST00000359984 DDB1Q16531 1140 aa25.73■■□□□ 1.71
CLN3-205ENST00000359984 GJD4Q96KN9 370 aaPredicted RBP25.72■■□□□ 1.71
CLN3-205ENST00000359984 SLC52A2Q9HAB3 445 aa25.72■■□□□ 1.71
CLN3-205ENST00000359984 TSPYL6Q8N831 410 aa25.72■■□□□ 1.71
CLN3-205ENST00000359984 C8orf58Q8NAV2 365 aa25.72■■□□□ 1.71
CLN3-205ENST00000359984 RNF123Q5XPI4 1314 aa25.71■■□□□ 1.71
CLN3-205ENST00000359984 BTBD11A6QL63 1104 aa25.7■■□□□ 1.71
CLN3-205ENST00000359984 KRT24Q2M2I5 525 aa25.7■■□□□ 1.71
CLN3-205ENST00000359984 NFATC2IPQ8NCF5 419 aa25.7■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms