RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 IRX6P78412 446 aaPredicted RBP24.24■■□□□ 1.47
CLN3-204ENST00000357857 PLEKHO1Q53GL0 409 aaPredicted RBP24.24■■□□□ 1.47
CLN3-204ENST00000357857 MCM10Q7L590 875 aa24.24■■□□□ 1.47
CLN3-204ENST00000357857 LAS1LQ9Y4W2 734 aaKnown RBP24.24■■□□□ 1.47
CLN3-204ENST00000357857 MAP3K5Q99683 1374 aa24.24■■□□□ 1.47
CLN3-204ENST00000357857 WDR17Q8IZU2 1322 aa24.24■■□□□ 1.47
CLN3-204ENST00000357857 GNAT3A8MTJ3 354 aa24.24■■□□□ 1.47
CLN3-204ENST00000357857 AMOTQ4VCS5 1084 aa24.24■■□□□ 1.47
CLN3-204ENST00000357857 LRRC37A3O60309 1634 aa24.23■■□□□ 1.47
CLN3-204ENST00000357857 ZNF853P0CG23 659 aa24.23■■□□□ 1.47
CLN3-204ENST00000357857 CFAP44Q96MT7 982 aa24.22■■□□□ 1.47
CLN3-204ENST00000357857 RAPGEF4Q8WZA2 1011 aa24.21■■□□□ 1.47
CLN3-204ENST00000357857 EXOSC9Q06265 439 aaKnown RBP24.21■■□□□ 1.47
CLN3-204ENST00000357857 VIRMAQ69YN4 1812 aaKnown RBP24.2■■□□□ 1.47
CLN3-204ENST00000357857 CT47B1P0C2W7 299 aaPredicted RBP24.2■■□□□ 1.46
CLN3-204ENST00000357857 CRB1P82279 1406 aa24.2■■□□□ 1.46
CLN3-204ENST00000357857 PLEKHG2Q9H7P9 1386 aa24.19■■□□□ 1.46
CLN3-204ENST00000357857 TATP17735 454 aaPredicted RBP24.19■■□□□ 1.46
CLN3-204ENST00000357857 ZNF530Q6P9A1 599 aaPredicted RBP24.19■■□□□ 1.46
CLN3-204ENST00000357857 TOM1L2Q6ZVM7 507 aa24.19■■□□□ 1.46
CLN3-204ENST00000357857 EVA1CP58658 441 aa24.18■■□□□ 1.46
CLN3-204ENST00000357857 MBIPQ9NS73 344 aa24.18■■□□□ 1.46
CLN3-204ENST00000357857 MEGF6O75095 1541 aa24.18■■□□□ 1.46
CLN3-204ENST00000357857 PARP4Q9UKK3 1724 aaKnown RBP24.17■■□□□ 1.46
CLN3-204ENST00000357857 AKAP4Q5JQC9 854 aa24.17■■□□□ 1.46
CLN3-204ENST00000357857 STRN4Q9NRL3 753 aa24.17■■□□□ 1.46
CLN3-204ENST00000357857 PKD1L3Q7Z443 1732 aa24.17■■□□□ 1.46
CLN3-204ENST00000357857 PLCH1Q4KWH8 1693 aa24.16■■□□□ 1.46
CLN3-204ENST00000357857 BTG4Q9NY30 223 aa24.16■■□□□ 1.46
CLN3-204ENST00000357857 ERICH6BQ5W0A0 696 aa24.15■■□□□ 1.46
CLN3-204ENST00000357857 CARD10Q9BWT7 1032 aa24.15■■□□□ 1.46
CLN3-204ENST00000357857 CHL1O00533 1208 aa24.15■■□□□ 1.46
CLN3-204ENST00000357857 C1orf141Q5JVX7 400 aa24.15■■□□□ 1.46
CLN3-204ENST00000357857 IL17REQ8NFR9 667 aa24.15■■□□□ 1.46
CLN3-204ENST00000357857 RARSP54136 660 aaKnown RBP24.14■■□□□ 1.45
CLN3-204ENST00000357857 LARP1Q6PKG0 1096 aaKnown RBP24.14■■□□□ 1.45
CLN3-204ENST00000357857 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.14■■□□□ 1.45
CLN3-204ENST00000357857 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.14■■□□□ 1.45
CLN3-204ENST00000357857 BCAR3O75815 825 aa24.13■■□□□ 1.45
CLN3-204ENST00000357857 SPG7Q9UQ90 795 aa24.13■■□□□ 1.45
CLN3-204ENST00000357857 PLIN1O60240 522 aa24.13■■□□□ 1.45
CLN3-204ENST00000357857 JCADQ9P266 1359 aa24.13■■□□□ 1.45
CLN3-204ENST00000357857 CEMIPQ8WUJ3 1361 aa24.12■■□□□ 1.45
CLN3-204ENST00000357857 NUTM2BA6NNL0 878 aaPredicted RBP24.12■■□□□ 1.45
CLN3-204ENST00000357857 NUTM2EB1AL46 878 aaPredicted RBP24.12■■□□□ 1.45
CLN3-204ENST00000357857 ADAMTS2O95450 1211 aa24.12■■□□□ 1.45
CLN3-204ENST00000357857 NUTM2AQ8IVF1 878 aaPredicted RBP24.12■■□□□ 1.45
CLN3-204ENST00000357857 OVOS2A0A0G2JMS6 1433 aa24.11■■□□□ 1.45
CLN3-204ENST00000357857 NRAPQ86VF7 1730 aa24.1■■□□□ 1.45
CLN3-204ENST00000357857 ADAMTS7Q9UKP4 1686 aa24.1■■□□□ 1.45
CLN3-204ENST00000357857 TSPYL4Q9UJ04 414 aa24.09■■□□□ 1.45
CLN3-204ENST00000357857 SCN11AQ9UI33 1791 aa24.08■■□□□ 1.45
CLN3-204ENST00000357857 NWD2Q9ULI1 1742 aa24.08■■□□□ 1.45
CLN3-204ENST00000357857 LGR6Q9HBX8 967 aa24.08■■□□□ 1.45
CLN3-204ENST00000357857 RNMTO43148 476 aaKnown RBP24.07■■□□□ 1.44
CLN3-204ENST00000357857 TAF7Q15545 349 aaPredicted RBP24.07■■□□□ 1.44
CLN3-204ENST00000357857 MPRIPQ6WCQ1 1025 aa24.07■■□□□ 1.44
CLN3-204ENST00000357857 ZNF428Q96B54 188 aa24.07■■□□□ 1.44
CLN3-204ENST00000357857 BABAM1Q9NWV8 329 aa24.07■■□□□ 1.44
CLN3-204ENST00000357857 IL2RBP14784 551 aa24.07■■□□□ 1.44
CLN3-204ENST00000357857 MIS18AQ9NYP9 233 aa24.07■■□□□ 1.44
CLN3-204ENST00000357857 TSPYL6Q8N831 410 aa24.06■■□□□ 1.44
CLN3-204ENST00000357857 C8orf58Q8NAV2 365 aa24.06■■□□□ 1.44
CLN3-204ENST00000357857 BCL2L13Q9BXK5 485 aa24.06■■□□□ 1.44
CLN3-204ENST00000357857 SIPA1L3O60292 1781 aaPredicted RBP24.06■■□□□ 1.44
CLN3-204ENST00000357857 VAMP4O75379 141 aa24.05■■□□□ 1.44
CLN3-204ENST00000357857 PHKG2P15735 406 aa24.05■■□□□ 1.44
CLN3-204ENST00000357857 TWISTNBQ3B726 338 aaPredicted RBP24.05■■□□□ 1.44
CLN3-204ENST00000357857 IFNL2Q8IZJ0 200 aa24.05■■□□□ 1.44
CLN3-204ENST00000357857 KDM3BQ7LBC6 1761 aa24.05■■□□□ 1.44
CLN3-204ENST00000357857 SMC4Q9NTJ3 1288 aa24.04■■□□□ 1.44
CLN3-204ENST00000357857 SHANK3Q9BYB0 1731 aa24.04■■□□□ 1.44
CLN3-204ENST00000357857 TEFQ10587 303 aa24.04■■□□□ 1.44
CLN3-204ENST00000357857 ALDH1L2Q3SY69 923 aa24.04■■□□□ 1.44
CLN3-204ENST00000357857 SSH1Q8WYL5 1049 aa24.04■■□□□ 1.44
CLN3-204ENST00000357857 WNK3Q9BYP7 1800 aa24.03■■□□□ 1.44
CLN3-204ENST00000357857 ELL2O00472 640 aaPredicted RBP24.03■■□□□ 1.44
CLN3-204ENST00000357857 CANXP27824 592 aaKnown RBP24.03■■□□□ 1.44
CLN3-204ENST00000357857 ZCRB1Q8TBF4 217 aaKnown RBP24.03■■□□□ 1.44
CLN3-204ENST00000357857 USP35Q9P2H5 1018 aa24.02■■□□□ 1.44
CLN3-204ENST00000357857 SPATA31A6Q5VVP1 1343 aa24.02■■□□□ 1.44
CLN3-204ENST00000357857 CYP27B1O15528 508 aa24.01■■□□□ 1.43
CLN3-204ENST00000357857 C20orf194Q5TEA3 1177 aa24.01■■□□□ 1.43
CLN3-204ENST00000357857 SLIT2O94813 1529 aa24.01■■□□□ 1.43
CLN3-204ENST00000357857 HSPA1LP34931 641 aa24.01■■□□□ 1.43
CLN3-204ENST00000357857 FRAT1Q92837 279 aaPredicted RBP24.01■■□□□ 1.43
CLN3-204ENST00000357857 PPP4R2Q9NY27 417 aa24.01■■□□□ 1.43
CLN3-204ENST00000357857 KDM6AO15550 1401 aaPredicted RBP24.01■■□□□ 1.43
CLN3-204ENST00000357857 PCDH11XQ9BZA7 1347 aa24■■□□□ 1.43
CLN3-204ENST00000357857 PCDH11YQ9BZA8 1340 aa24■■□□□ 1.43
CLN3-204ENST00000357857 HSP90AB1P08238 724 aaKnown RBP24■■□□□ 1.43
CLN3-204ENST00000357857 KRT24Q2M2I5 525 aa23.99■■□□□ 1.43
CLN3-204ENST00000357857 EXOC6Q8TAG9 804 aa23.99■■□□□ 1.43
CLN3-204ENST00000357857 CRBNQ96SW2 442 aa23.98■■□□□ 1.43
CLN3-204ENST00000357857 DISP2A7MBM2 1401 aa23.98■■□□□ 1.43
CLN3-204ENST00000357857 PDE3AQ14432 1141 aa23.98■■□□□ 1.43
CLN3-204ENST00000357857 DCAF5Q96JK2 942 aa23.98■■□□□ 1.43
CLN3-204ENST00000357857 BTBD11A6QL63 1104 aa23.96■■□□□ 1.43
CLN3-204ENST00000357857 BRPF1P55201 1214 aaPredicted RBP23.96■■□□□ 1.43
CLN3-204ENST00000357857 KIF16BQ96L93 1317 aa23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms