RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 NOM1Q5C9Z4 860 aaKnown RBP13.94□□□□□ -0.18
COL9A1-202ENST00000357250 AMER1Q5JTC6 1135 aaPredicted RBP13.94□□□□□ -0.18
COL9A1-202ENST00000357250 EPS15P42566 896 aa13.94□□□□□ -0.18
COL9A1-202ENST00000357250 TXLNBQ8N3L3 684 aa13.94□□□□□ -0.18
COL9A1-202ENST00000357250 FIBPO43427 364 aa13.93□□□□□ -0.18
COL9A1-202ENST00000357250 BLOC1S2Q6QNY1 142 aa13.93□□□□□ -0.18
COL9A1-202ENST00000357250 MCM10Q7L590 875 aa13.93□□□□□ -0.18
COL9A1-202ENST00000357250 R3HCC1Q9Y3T6 440 aaKnown RBP13.93□□□□□ -0.18
COL9A1-202ENST00000357250 NSD2O96028 1365 aa13.93□□□□□ -0.18
COL9A1-202ENST00000357250 RDXP35241 583 aaKnown RBP13.93□□□□□ -0.18
COL9A1-202ENST00000357250 AEBP2Q6ZN18 517 aaPredicted RBP13.93□□□□□ -0.18
COL9A1-202ENST00000357250 CFAP45Q9UL16 551 aa13.93□□□□□ -0.18
COL9A1-202ENST00000357250 USHBP1Q8N6Y0 703 aa13.93□□□□□ -0.18
COL9A1-202ENST00000357250 AMOTL2Q9Y2J4 779 aa13.93□□□□□ -0.18
COL9A1-202ENST00000357250 KCNH5Q8NCM2 988 aa13.92□□□□□ -0.18
COL9A1-202ENST00000357250 RAB11FIP3O75154 756 aa13.92□□□□□ -0.18
COL9A1-202ENST00000357250 NAP1L1P55209 391 aaKnown RBP13.92□□□□□ -0.18
COL9A1-202ENST00000357250 CABP4P57796 275 aa13.92□□□□□ -0.18
COL9A1-202ENST00000357250 CNNM1Q9NRU3 951 aa13.92□□□□□ -0.18
COL9A1-202ENST00000357250 MAGEC2Q9UBF1 373 aaPredicted RBP13.92□□□□□ -0.18
COL9A1-202ENST00000357250 PRM3Q9NNZ6 103 aa13.92□□□□□ -0.18
COL9A1-202ENST00000357250 MAGI3Q5TCQ9 1506 aa13.92□□□□□ -0.18
COL9A1-202ENST00000357250 MCM4P33991 863 aa13.92□□□□□ -0.18
COL9A1-202ENST00000357250 FOSBP53539 338 aa13.92□□□□□ -0.18
COL9A1-202ENST00000357250 PDILTQ8N807 584 aa13.92□□□□□ -0.18
COL9A1-202ENST00000357250 LUC7LQ9NQ29 371 aaKnown RBP13.92□□□□□ -0.18
COL9A1-202ENST00000357250 FOXO3O43524 673 aa13.91□□□□□ -0.18
COL9A1-202ENST00000357250 CT47A1Q5JQC4 288 aaPredicted RBP13.91□□□□□ -0.18
COL9A1-202ENST00000357250 NKTRP30414 1462 aaKnown RBP13.91□□□□□ -0.18
COL9A1-202ENST00000357250 CBFA2T2O43439 604 aa13.91□□□□□ -0.18
COL9A1-202ENST00000357250 SMC2O95347 1197 aa13.91□□□□□ -0.18
COL9A1-202ENST00000357250 MEX3CQ5U5Q3 659 aaKnown RBP13.91□□□□□ -0.18
COL9A1-202ENST00000357250 LARP1BQ659C4 914 aaKnown RBP13.91□□□□□ -0.18
COL9A1-202ENST00000357250 TESK2Q96S53 571 aa13.91□□□□□ -0.18
COL9A1-202ENST00000357250 NUP160Q12769 1436 aa13.9□□□□□ -0.18
COL9A1-202ENST00000357250 TCOF1Q13428 1488 aaKnown RBP13.9□□□□□ -0.18
COL9A1-202ENST00000357250 SRGAP3O43295 1099 aa13.9□□□□□ -0.18
COL9A1-202ENST00000357250 FBXW7Q969H0 707 aa13.9□□□□□ -0.18
COL9A1-202ENST00000357250 TNMDQ9H2S6 317 aa13.9□□□□□ -0.18
COL9A1-202ENST00000357250 CWC15Q9P013 229 aaKnown RBP13.9□□□□□ -0.18
COL9A1-202ENST00000357250 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.9□□□□□ -0.18
COL9A1-202ENST00000357250 STIM1Q13586 685 aa13.9□□□□□ -0.18
COL9A1-202ENST00000357250 SCAF11Q99590 1463 aaKnown RBP13.9□□□□□ -0.18
COL9A1-202ENST00000357250 CFAP43Q8NDM7 1665 aa13.9□□□□□ -0.18
COL9A1-202ENST00000357250 CDK5RAP3Q96JB5 506 aa13.9□□□□□ -0.18
COL9A1-202ENST00000357250 GRPEL1Q9HAV7 217 aa13.9□□□□□ -0.18
COL9A1-202ENST00000357250 CCDC57Q2TAC2 916 aa13.9□□□□□ -0.19
COL9A1-202ENST00000357250 ZNHIT6Q9NWK9 470 aaKnown RBP13.9□□□□□ -0.19
COL9A1-202ENST00000357250 CEP126Q9P2H0 1117 aa13.9□□□□□ -0.19
COL9A1-202ENST00000357250 KIF1BPQ96EK5 621 aa13.89□□□□□ -0.19
COL9A1-202ENST00000357250 NOL7Q9UMY1 257 aaKnown RBP13.89□□□□□ -0.19
COL9A1-202ENST00000357250 PLEKHH1Q9ULM0 1364 aa13.89□□□□□ -0.19
COL9A1-202ENST00000357250 FAM135AQ9P2D6 1515 aa13.89□□□□□ -0.19
COL9A1-202ENST00000357250 GNAT3A8MTJ3 354 aa13.89□□□□□ -0.19
COL9A1-202ENST00000357250 WASLO00401 505 aaPredicted RBP13.89□□□□□ -0.19
COL9A1-202ENST00000357250 ABCA5Q8WWZ7 1642 aa13.89□□□□□ -0.19
COL9A1-202ENST00000357250 WASF1Q92558 559 aa13.89□□□□□ -0.19
COL9A1-202ENST00000357250 GLRX3O76003 335 aaKnown RBP13.88□□□□□ -0.19
COL9A1-202ENST00000357250 ODF2Q5BJF6 829 aa13.88□□□□□ -0.19
COL9A1-202ENST00000357250 CCAR1Q8IX12 1150 aaKnown RBP13.88□□□□□ -0.19
COL9A1-202ENST00000357250 CAGE1Q8TC20 777 aa13.88□□□□□ -0.19
COL9A1-202ENST00000357250 PDRG1Q9NUG6 133 aa13.88□□□□□ -0.19
COL9A1-202ENST00000357250 ZRANB1Q9UGI0 708 aa13.88□□□□□ -0.19
COL9A1-202ENST00000357250 AACSQ86V21 672 aa13.88□□□□□ -0.19
COL9A1-202ENST00000357250 WDR7Q9Y4E6 1490 aa13.88□□□□□ -0.19
COL9A1-202ENST00000357250 NCKAP5LQ9HCH0 1330 aa13.87□□□□□ -0.19
COL9A1-202ENST00000357250 CCDC66A2RUB6 948 aa13.87□□□□□ -0.19
COL9A1-202ENST00000357250 FAM177BA6PVY3 158 aa13.87□□□□□ -0.19
COL9A1-202ENST00000357250 FYB1O15117 783 aa13.87□□□□□ -0.19
COL9A1-202ENST00000357250 RARSP54136 660 aaKnown RBP13.87□□□□□ -0.19
COL9A1-202ENST00000357250 CEP57L1Q8IYX8 460 aa13.87□□□□□ -0.19
COL9A1-202ENST00000357250 SSH1Q8WYL5 1049 aa13.87□□□□□ -0.19
COL9A1-202ENST00000357250 RBM42Q9BTD8 480 aaKnown RBP13.87□□□□□ -0.19
COL9A1-202ENST00000357250 PRAG1Q86YV5 1406 aa13.87□□□□□ -0.19
COL9A1-202ENST00000357250 TMEM57Q8N5G2 664 aa13.87□□□□□ -0.19
COL9A1-202ENST00000357250 DDX54Q8TDD1 881 aaKnown RBP13.87□□□□□ -0.19
COL9A1-202ENST00000357250 PZPP20742 1482 aa13.87□□□□□ -0.19
COL9A1-202ENST00000357250 ME1P48163 572 aa13.87□□□□□ -0.19
COL9A1-202ENST00000357250 FAM83GA6ND36 823 aa13.86□□□□□ -0.19
COL9A1-202ENST00000357250 CCDC69A6NI79 296 aa13.86□□□□□ -0.19
COL9A1-202ENST00000357250 BTBD11A6QL63 1104 aa13.86□□□□□ -0.19
COL9A1-202ENST00000357250 A2MP01023 1474 aa13.86□□□□□ -0.19
COL9A1-202ENST00000357250 DUSP27Q5VZP5 1158 aa13.86□□□□□ -0.19
COL9A1-202ENST00000357250 AMOTQ4VCS5 1084 aa13.86□□□□□ -0.19
COL9A1-202ENST00000357250 LRPPRCP42704 1394 aaKnown RBP13.86□□□□□ -0.19
COL9A1-202ENST00000357250 PPFIBP1Q86W92 1011 aa13.86□□□□□ -0.19
COL9A1-202ENST00000357250 SERPINC1P01008 464 aa13.85□□□□□ -0.19
COL9A1-202ENST00000357250 SPATA32Q96LK8 384 aa13.85□□□□□ -0.19
COL9A1-202ENST00000357250 MPHOSPH8Q99549 860 aa13.85□□□□□ -0.19
COL9A1-202ENST00000357250 NUP62CLQ9H1M0 184 aa13.85□□□□□ -0.19
COL9A1-202ENST00000357250 SH2B1Q9NRF2 756 aaPredicted RBP13.85□□□□□ -0.19
COL9A1-202ENST00000357250 TOM1L2Q6ZVM7 507 aa13.85□□□□□ -0.19
COL9A1-202ENST00000357250 SMTNL1A8MU46 457 aa13.84□□□□□ -0.19
COL9A1-202ENST00000357250 JAKMIP1Q96N16 626 aaKnown RBP13.84□□□□□ -0.19
COL9A1-202ENST00000357250 IL16Q14005 1332 aa13.84□□□□□ -0.19
COL9A1-202ENST00000357250 RRP12Q5JTH9 1297 aaKnown RBP13.84□□□□□ -0.19
COL9A1-202ENST00000357250 LARP1Q6PKG0 1096 aaKnown RBP13.84□□□□□ -0.19
COL9A1-202ENST00000357250 CARD14Q9BXL6 1004 aa13.84□□□□□ -0.19
COL9A1-202ENST00000357250 PBRM1Q86U86 1689 aa13.84□□□□□ -0.19
COL9A1-202ENST00000357250 KIF2AO00139 706 aaPredicted RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms